From 36513c1f8d94577cc8b22e6b058b12003f39db51 Mon Sep 17 00:00:00 2001 From: Chris Macklin Date: Thu, 28 Mar 2024 23:05:53 -0700 Subject: [PATCH] Update enclone_ranger. --- Cargo.lock | 58 +++++++++++++++++++++++++++--------------------------- 1 file changed, 29 insertions(+), 29 deletions(-) diff --git a/Cargo.lock b/Cargo.lock index 958814610..aaf04efa2 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -35,7 +35,7 @@ dependencies = [ [[package]] name = "align_tools" version = "0.1.12" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "bio_edit", "debruijn", @@ -47,7 +47,7 @@ dependencies = [ [[package]] name = "amino" version = "0.1.7" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "debruijn", "string_utils", @@ -56,7 +56,7 @@ dependencies = [ [[package]] name = "ansi_escape" version = "0.1.3" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "string_utils", "vector_utils", @@ -248,7 +248,7 @@ dependencies = [ [[package]] name = "bio_edit" version = "0.1.1" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "bio-types", "bit-set", @@ -624,7 +624,7 @@ dependencies = [ [[package]] name = "dna" version = "0.1.3" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" [[package]] name = "doc-comment" @@ -647,7 +647,7 @@ checksum = "e78d4f1cc4ae33bbfc157ed5d5a5ef3bc29227303d595861deb238fcec4e9457" [[package]] name = "enclone" version = "0.5.219" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "amino", "ansi_escape", @@ -672,7 +672,7 @@ dependencies = [ [[package]] name = "enclone_args" version = "0.5.219" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "debruijn", "enclone_core", @@ -708,7 +708,7 @@ dependencies = [ [[package]] name = "enclone_core" version = "0.5.219" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "amino", "ansi_escape", @@ -853,7 +853,7 @@ dependencies = [ [[package]] name = "enclone_print" version = "0.5.219" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "amino", "ansi_escape", @@ -885,7 +885,7 @@ dependencies = [ [[package]] name = "enclone_proto" version = "0.5.219" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "bio_edit", "byteorder", @@ -898,7 +898,7 @@ dependencies = [ [[package]] name = "enclone_ranger" version = "0.5.219" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "enclone", "enclone_args", @@ -914,7 +914,7 @@ dependencies = [ [[package]] name = "enclone_stuff" version = "0.5.219" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "amino", "debruijn", @@ -1019,7 +1019,7 @@ dependencies = [ [[package]] name = "enclone_vars" version = "0.5.219" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "io_utils", "itertools", @@ -1058,7 +1058,7 @@ dependencies = [ [[package]] name = "equiv" version = "0.1.3" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" [[package]] name = "errno" @@ -1100,7 +1100,7 @@ checksum = "1d4fd7bd9e32c1205549decf6f36772d7b606a579b26afaffa335ae148151a5d" [[package]] name = "exons" version = "0.1.5" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "io_utils", "string_utils", @@ -1110,7 +1110,7 @@ dependencies = [ [[package]] name = "expr_tools" version = "0.1.3" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "evalexpr", "statrs", @@ -1121,7 +1121,7 @@ dependencies = [ [[package]] name = "fasta_tools" version = "0.1.8" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "debruijn", "flate2", @@ -1285,7 +1285,7 @@ checksum = "6fb8d784f27acf97159b40fc4db5ecd8aa23b9ad5ef69cdd136d3bc80665f0c0" [[package]] name = "graph_simple" version = "0.1.5" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "petgraph", "vector_utils", @@ -1330,7 +1330,7 @@ name = "hdf5-sys" version = "0.8.1" source = "git+https://github.com/10XGenomics/hdf5-rust.git?branch=conda_nov2021#2d4a40b7ef75de530bc53fd2eb0fe75047e083ad" dependencies = [ - "attohttpc 0.18.0", + "attohttpc 0.19.1", "bzip2", "libc", "libloading", @@ -1392,7 +1392,7 @@ dependencies = [ [[package]] name = "hyperbase" version = "0.1.8" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "debruijn", "equiv", @@ -1426,7 +1426,7 @@ dependencies = [ [[package]] name = "io_utils" version = "0.3.2" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "bincode", "flate2", @@ -1492,7 +1492,7 @@ dependencies = [ [[package]] name = "kmer_lookup" version = "0.1.5" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "debruijn", "rayon", @@ -2545,12 +2545,12 @@ dependencies = [ [[package]] name = "stats_utils" version = "0.1.3" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" [[package]] name = "string_utils" version = "0.1.4" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "vector_utils", ] @@ -2614,7 +2614,7 @@ dependencies = [ [[package]] name = "tables" version = "0.1.5" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "io_utils", "itertools", @@ -2904,7 +2904,7 @@ dependencies = [ [[package]] name = "vdj_ann" version = "0.4.4" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "align_tools", "amino", @@ -2926,7 +2926,7 @@ dependencies = [ [[package]] name = "vdj_ann_ref" version = "0.2.1" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "debruijn", "exons", @@ -2942,7 +2942,7 @@ dependencies = [ [[package]] name = "vdj_types" version = "0.2.0" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "serde", ] @@ -2959,7 +2959,7 @@ dependencies = [ [[package]] name = "vector_utils" version = "0.1.5" -source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#b5cf3ba91bfe67c2f7713a4a1695e9c6c504fb34" +source = "git+https://github.com/10XGenomics/enclone_ranger?branch=macklin/unfold-two-pass-loop#e74e44e6bf14653e6a16d62934177b10d0666f73" dependencies = [ "permutation", "superslice",