SHELL=/bin/bash
SESSION_MANAGER=local/luna:@/tmp/.ICE-unix/1735305,unix/luna:/tmp/.ICE-unix/1735305
WINDOWID=56623107
ULTRASCAN=/usr/share/ultrascan3
COLORTERM=truecolor
CNS_NMRMODULE=/software/share/cns_solve-1.3-r8+haddock-2.2-patch/modules/nmr
GMX_NO_QUOTES=
SCIPY_PIL_IMAGE_VIEWER=/usr/bin/ristretto
XDG_CONFIG_DIRS=/etc/xdg:/etc/xdg
CNS_ARCH=intel-x86_64bit-linux
LESS=-R -M --shift 5
XDG_MENU_PREFIX=xfce-
JDK_HOME=/etc/java-config-2/current-system-vm
SYMOP=/software/share/ccp4-8.0/lib/data/symop.lib
CHTML=/software/share/ccp4-8.0/html
MAIN_DOC=/software/share/main_2012/doc/
CONFIG_PROTECT_MASK=/etc/sandbox.d /etc/fonts/fonts.conf /etc/gentoo-release /etc/dconf /etc/ca-certificates.conf /etc/texmf/web2c /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/revdep-rebuild
R_HOME=/usr/lib64/R
CCP4_OPEN=UNKNOWN
CLIBD=/software/share/ccp4-8.0/lib/data
PKG_CONFIG_PATH=/opt/intel/oneapi/mkl/2022.2.1/lib/pkgconfig
GNOME_KEYRING_CONTROL=/home/markus/.cache/keyring-8YYQ21
HKLDIR=/software/share/hkl2000-v721.4/hklint
MOE=/software/share/moe2022
GMXTIMEUNIT=ps
PlotStats=jdtplot DTPROCESS_LOGFILE_NAME
LC_ADDRESS=en_CA.UTF-8
JAVA_HOME=/etc/java-config-2/current-system-vm
SOLVEDIR=/software/lib/solve/
LC_NAME=en_CA.UTF-8
SSH_AUTH_SOCK=/home/markus/.cache/keyring-8YYQ21/ssh
SYMINFO=/software/share/ccp4-8.0/lib/data/syminfo.lib
CNS_XTALMODULE=/software/share/cns_solve-1.3-r8+haddock-2.2-patch/modules/xtal
CCP4I_TOP=/software/share/ccp4-8.0/share/ccp4i
CCP4_MASTER=/software/share
ANT_HOME=/usr/share/ant
MAIN_MENU=/software/share/main_2012/doc/menu/
RELION_RESMAP_EXECUTABLE=/usr/bin/ResMap
DESKTOP_SESSION=xfce
LC_MONETARY=en_CA.UTF-8
CCP4_HELPDIR=/software/share/ccp4-8.0/help/
EDITOR=vim
BALBES_ROOT=/software/share/ccp4-8.0/BALBES
RELION_PDFVIEWER_EXECUTABLE=/usr/bin/atril
GTK_MODULES=canberra-gtk-module
MAIN_UTILS=/software/share/main_2012/utils/
PWD=/home/markus/software/src/relion
CONFIG_PROTECT=/usr/share/gnupg/qualified.txt /usr/lib64/libreoffice/program/sofficerc
MRD_PROG=/software/share/MoRDa_DB/bin_linux
LOGNAME=markus
XDG_SESSION_DESKTOP=xfce
QT_QPA_PLATFORMTHEME=qt5ct
motifdir=/software/share/promotif3.0mm-r1
XDG_SESSION_TYPE=tty
CEXAM=/software/share/ccp4-8.0/examples
MRD_DB=/software/share/MoRDa_DB
PANEL_GDK_CORE_DEVICE_EVENTS=0
CCP4_SCR=/tmp/markus
MANPATH=/home/markus/software/share/man:/home/markus/.local/share/man:/software/share/ccp4-8.0/share/man:/software/share/man:/etc/java-config-2/current-system-vm/man:/usr/share/gcc-data/x86_64-pc-linux-gnu/11/man:/usr/share/binutils-data/x86_64-pc-linux-gnu/2.39/man:/etc/java-config-2/current-system-vm/man/:/usr/local/share/man:/usr/share/man:/usr/lib/rust/man:/usr/lib/llvm/15/share/man:/usr/lib/llvm/11/share/man:/etc/eselect/wine/share/man:/software/share/IMOD/man
XAUTHORITY=/home/markus/.Xauthority
OPENCL_PROFILE=nvidia
MAIN_CMDS=/software/share/main_2012/cmds/
IMOD_CALIB_DIR=
MOTD_SHOWN=pam
VIRTUALENVWRAPPER_SCRIPT=/usr/bin/virtualenvwrapper.sh
warpdoc=/software/share/arp_warp_8.0/manual
HOME=/home/markus
LANG=en_CA.UTF-8
LC_PAPER=en_CA.UTF-8
DSSP=/software/bin/dssp
LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:su=37;41:sg=30;43:ca=00:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.avif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.webp=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.cfg=00;32:*.conf=00;32:*.diff=00;32:*.doc=00;32:*.ini=00;32:*.log=00;32:*.patch=00;32:*.pdf=00;32:*.ps=00;32:*.tex=00;32:*.txt=00;32:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:*~=00;90:*#=00;90:*.bak=00;90:*.old=00;90:*.orig=00;90:*.part=00;90:*.rej=00;90:*.swp=00;90:*.tmp=00;90:*.dpkg-dist=00;90:*.dpkg-old=00;90:*.ucf-dist=00;90:*.ucf-new=00;90:*.ucf-old=00;90:*.rpmnew=00;90:*.rpmorig=00;90:*.rpmsave=00;90:
XDG_CURRENT_DESKTOP=XFCE
FLTK_DOCDIR=/usr/share/doc/fltk-1.3.5-r4/html
VTE_VERSION=7002
IMOD_DIR=/software/share/IMOD
MSMS_ATMTYPENUMBERS=/software/share/msms-2.6.1/atmtypenumbers
GMX_VIEW_XPM=ristretto
VIRTUALENVWRAPPER_WORKON_CD=1
MMCIFDIC=/software/share/ccp4-8.0/lib/ccp4/cif_mmdic.lib
CNS_INST=/software/share/cns_solve-1.3-r8+haddock-2.2-patch/intel-x86_64bit-linux
CNS_NMRLIB=/software/share/cns_solve-1.3-r8+haddock-2.2-patch/libraries/nmr
CLIB=/software/share/ccp4-8.0/lib
LaueCheck=dtcell DTPROCESS_HEADER_NAME DTPROCESS_REFLNLIST_NAME
CNS_HELPLIB=/software/share/cns_solve-1.3-r8+haddock-2.2-patch/helplib
CNS_XTALLIB=/software/share/cns_solve-1.3-r8+haddock-2.2-patch/libraries/xtal
MergeHeaders=dtheadermerge DTPROCESS_HEADER_NAME DTPROCESS_IMAGE_NAME +SCAN\* +ROTATION\* +\*_GONIO_VALUES +SOURCE_WAVELENGTH DTREK_PREFIXnewmerge.head
IMOD_PLUGIN_DIR=/software/share/IMOD/lib/imodplug
SSH_CONNECTION=10.176.85.19 59632 10.50.9.225 22
GFORTRAN_UNBUFFERED_PRECONNECTED=Y
DTREK_BINSUFFIX=_linux
MODINSTALL10v4=/opt/modeller
QT_GRAPHICSSYSTEM=raster
EMBOSS_ACDROOT=/usr/share/EMBOSS/acd
OSYM=/software/share/o-11.0.2/data_duke/symm
CNS_SOURCE=/software/share/cns_solve-1.3-r8+haddock-2.2-patch/intel-x86_64bit-linux/source
GKLIB=/software/share/usf-7.9.2009/lib
warpbin=/software/share/arp_warp_8.0/bin/bin-x86_64-Linux
CCP4_LIB=/software/share/ccp4-8.0/lib
XUSERFILESEARCHPATH=/software/share/DTREK99/bin_linux/X/%N:
ICMHOME=/software/share/icm-3.9-1b
MAIN_R3D_FONT=/software/share/main_2012/crke/
NX_SYSTEM=/opt/NX
INFOPATH=/home/markus/software/share/info:/home/markus/.local/share/info:/software/share/info:/usr/share/gcc-data/x86_64-pc-linux-gnu/11/info:/usr/share/binutils-data/x86_64-pc-linux-gnu/2.39/info:/usr/share/info:/usr/share/info/emacs-28
X3DNA=/software/share/x3dna-v2.3
MOZ_GMP_PATH=/usr/lib64/nsbrowser/plugins/gmp-gmpopenh264/system-installed
MAIN_SYMM=/software/share/main_2012/symm/
DTREK_PROCESS_EXTERN=RankMyImage
WORKON_HOME=/software/share/virtualenv
CCP4=/software/share/ccp4-8.0
JAVAC=/etc/java-config-2/current-system-vm/bin/javac
HKLLIC=/software/share/hkl2000-v721.4/lib
HKLPATH=/software/share/hkl2000-v721.4/bin
HKLLIB=/software/share/hkl2000-v721.4/lib
XDG_SESSION_CLASS=user
CNS_CONFDB=/software/share/cns_solve-1.3-r8+haddock-2.2-patch/libraries/confdb
BDG_home=/software/share/sharp-2.8.12
PYTHONPATH=/software/lib64/python3.8/site-packages:/home/markus/scripts/lib/pylib
LC_IDENTIFICATION=en_CA.UTF-8
TERM=xterm-256color
GMX_VIEW_PDB=vmd
SHARP_home=/software/share/sharp-2.8.12
LESSOPEN=|lesspipe %s
MAIN_CMDS_NEW=/software/share/main_2012/cmds_new/
USER=markus
LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.2.1/lib/intel64
prodir=/usr/libexec/procheck/
MAIN_CONF=/software/share/main_2012/config/
MANPAGER=manpager
VIRTUALENVWRAPPER_PROJECT_FILENAME=.project
DISPLAY=:2.0
SHLVL=3
CRANK=/software/share/ccp4-8.0/share/ccp4i/crank
PAGER=less
LC_TELEPHONE=en_CA.UTF-8
LEX=flex
LC_MESSAGES=en_CA.UTF-8
LC_MEASUREMENT=en_CA.UTF-8
ODAT=/software/share/o-11.0.2/data_duke
XDG_SESSION_ID=2365
RELION_CTFFIND_EXECUTABLE=/usr/bin/ctffind
MAIN_COM=/software/share/main_2012/doc/com/
XDG_DESKTOP_NAMES=XFCE
LD_LIBRARY_PATH=/opt/intel/oneapi/mkl/2022.2.1/lib/intel64:/home/markus/software/lib64:/home/markus/.local/lib64:/software/lib:/usr/local/lib:/software/share/IMOD/lib
EMBOSS_DATA=/usr/share/EMBOSS/data
LC_CTYPE=en_CA.UTF-8
CLIBD_MON=/software/share/ccp4-8.0/lib/data/monomers/
XSESSION=Xfce4
XDG_RUNTIME_DIR=/run/user/1002
GMX_VIEW_XVG=xmgrace
GCC_SPECS=
SSL_CERT_FILE=/software/share/ccp4-8.0/etc/ssl/cacert.pem
MARCCDMask=dtnonunfedit DTPROCESS_IMAGE_NAME DTPROCESS_IMAGE_NAME 11 marccd.mask
GSETTINGS_BACKEND=dconf
SSH_CLIENT=10.176.85.19 59632 22
DTREK_LICENSE_FILE=/software/share/DTREK99/bin/DTREK_LICENSE_FILE
CBIN=/software/share/ccp4-8.0/bin
VNC_SESSION=
MKLROOT=/opt/intel/oneapi/mkl/2022.2.1
STEREO=ON
LC_TIME=en_CA.UTF-8
OMP_NUM_THREADS=24
DTREK_HTML_ROOT=/software/share/DTREK99/doc/HTML
CNS_LIB=/software/share/cns_solve-1.3-r8+haddock-2.2-patch/libraries
CNS_MODULE=/software/share/cns_solve-1.3-r8+haddock-2.2-patch/modules
LC_ALL=
CNS_TOPPAR=/software/share/cns_solve-1.3-r8+haddock-2.2-patch/libraries/toppar
LC_COLLATE=en_CA.UTF-8
CETC=/software/share/ccp4-8.0/etc
XDG_DATA_DIRS=/usr/local/share:/usr/share:/etc/eselect/wine/share:/usr/share
NLSPATH=/opt/intel/oneapi/mkl/2022.2.1/lib/intel64/locale/%l_%t/%N
BROWSER=/usr/bin/firefox
PATH=/opt/intel/oneapi/mkl/2022.2.1/bin/intel64:/usr/local/sbin:/usr/local/bin:/usr/bin:/opt/bin:/usr/lib/llvm/15/bin:/usr/lib/llvm/11/bin:/opt/cuda/bin:/opt/cuda/libnvvp
CNS_XRAYLIB=/software/share/cns_solve-1.3-r8+haddock-2.2-patch/libraries/xray
VIRTUALENVWRAPPER_HOOK_DIR=/software/share/virtualenv
GDMSESSION=xfce
HKLBASE=/software/share/hkl2000-v721.4
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/1002/bus
CNS_SOLVE=/software/share/cns_solve-1.3-r8+haddock-2.2-patch
DTREK_ROOT=/software/share/DTREK99
MAIL=/var/mail/markus
MAIN=/software/share/main_2012/
RELION_MOTIONCOR2_EXECUTABLE=/usr/bin/MotionCor2
DTREK_REFLN_BINARY=True
CCP4I_TCLTK=/software/share/ccp4-8.0/bin
ROSETTA3_DB=/software/share/rosetta-3.12/database
CPATH=/opt/intel/oneapi/mkl/2022.2.1/include
CINCL=/software/share/ccp4-8.0/include
PDB_EXTRACT=/software/share/pdb-extract-v3.11
LC_NUMERIC=en_CA.UTF-8
OLDPWD=/home/markus/software/src/relion/relion_build
RELION_WARNING_LOCAL_MPI=24
GMX_VIEW_EPS=atril
_=/usr/bin/env