diff --git a/docs/source/bio.rst b/docs/source/bio.rst index b57e0fc..6f64877 100644 --- a/docs/source/bio.rst +++ b/docs/source/bio.rst @@ -7,6 +7,8 @@ Requirement level: optional Recommended: **Yes** +Namespace: *4dn_FOF-CT_bio* + Summary ------- This table is highly recommended and it is designed to store and share diff --git a/docs/source/cell.rst b/docs/source/cell.rst index 1a47f88..741c6dd 100644 --- a/docs/source/cell.rst +++ b/docs/source/cell.rst @@ -7,6 +7,8 @@ Requirement level: optional Recommended: **Yes** +Namespace: *4dn_FOF-CT_cell* + Summary ------- This table is optionally used to document properties that are globally associated with individual Cells (e.g., cell size, cell volume, cell type) identified as part of this experiment. diff --git a/docs/source/core.rst b/docs/source/core.rst index 9b83689..a7b054b 100644 --- a/docs/source/core.rst +++ b/docs/source/core.rst @@ -4,6 +4,7 @@ DNA-Spot/Trace Data core table ============================== Requirement level: **required** +Namespace: *4dn_FOF-CT_core* Summary ------- diff --git a/docs/source/demultiplexing.rst b/docs/source/demultiplexing.rst index d44388b..73d607d 100644 --- a/docs/source/demultiplexing.rst +++ b/docs/source/demultiplexing.rst @@ -7,6 +7,8 @@ Requirement level: optional Recommended: **Yes** +Namespace: *4dn_FOF-CT_demultiplexing* + Summary ------- This table is optional and is designed to be used in the case of multiplexed FISH experiments (i.e., MERFISH) in which the final localization of a bright DNA or RNA Spot results from the combination of multiple individual localization events (e.g., by combining particles detected and localized in separate images). diff --git a/docs/source/extracell.rst b/docs/source/extracell.rst index 39496be..73bf22c 100644 --- a/docs/source/extracell.rst +++ b/docs/source/extracell.rst @@ -7,6 +7,8 @@ Requirement level: optional Recommended: **Yes** +Namespace: *4dn_FOF-CT_extracell* + Summary ------- This table is optionally used to document properties (i.e., volume, mean fluorescence intensity) that are globally associated with individual extracellular structures (e.g., Tissue, Organoid, etc.) Regions of Interest (ROI) identified as part of this experiment. diff --git a/docs/source/mapping.rst b/docs/source/mapping.rst index abc953e..6ffdef9 100644 --- a/docs/source/mapping.rst +++ b/docs/source/mapping.rst @@ -5,6 +5,8 @@ Cell/ROI Mapping table Requirement level: *conditionally required* +Namespace: *4dn_FOF-CT_mapping* + Summary ------- This table is used to provide the boundaries of Cells and other ROIs diff --git a/docs/source/quality.rst b/docs/source/quality.rst index a3334dd..f37b2a2 100644 --- a/docs/source/quality.rst +++ b/docs/source/quality.rst @@ -7,6 +7,8 @@ Requirement level: optional Recommended: **Yes** +Namespace: *4dn_FOF-CT_quality* + Summary ------- This table is highly recommended and it is designed to provide quality diff --git a/docs/source/rna_bio.rst b/docs/source/rna_bio.rst index 3cb6b51..8196bf9 100644 --- a/docs/source/rna_bio.rst +++ b/docs/source/rna_bio.rst @@ -7,6 +7,8 @@ Requirement level: optional Recommended: **Yes** +Namespace: *4dn_FOF-CT_rna_bio* + Summary ------- This table is highly recommended and it is designed to store and share diff --git a/docs/source/rna_quality.rst b/docs/source/rna_quality.rst index 23dee67..1941f10 100644 --- a/docs/source/rna_quality.rst +++ b/docs/source/rna_quality.rst @@ -7,6 +7,8 @@ Requirement level: optional Recommended: **Yes** +Namespace: *4dn_FOF-CT_rna_quality* + Summary ------- This table is highly recommended and it is designed to provide quality diff --git a/docs/source/subcell.rst b/docs/source/subcell.rst index cee78a7..b649f41 100644 --- a/docs/source/subcell.rst +++ b/docs/source/subcell.rst @@ -7,6 +7,8 @@ Requirement level: optional Recommended: **Yes** +Namespace: *4dn_FOF-CT_subcell** + Summary ------- This table is optionally used to document properties that are globally associated with individual sub-cellular ROIs that typically correspond to sub-nuclear features (e.g., Nucleoli, Nuclear Lamina, Chromosome Domains, PML bodies, etc.) identified as part of this experiment. diff --git a/docs/source/trace.rst b/docs/source/trace.rst index a2d9330..5b32a2e 100644 --- a/docs/source/trace.rst +++ b/docs/source/trace.rst @@ -7,6 +7,8 @@ Requirement level: optional Recommended: **Yes** +Namespace: *4dn_FOF-CT_trace* + Summary ------- This table is optionally used to document properties that are globally associated with individual Traces rather than individual bright Spots (e.g., Physical coordinates, RNA transcription, or Allele). These are properties that are shared by all bright Spots that constitute a Trace.