diff --git a/raisinbread/RB_files/RB_CNV.sql b/raisinbread/RB_files/RB_CNV.sql index 9a5da414fb1..40ff309e057 100644 --- a/raisinbread/RB_files/RB_CNV.sql +++ b/raisinbread/RB_files/RB_CNV.sql @@ -1,5 +1,9 @@ SET FOREIGN_KEY_CHECKS=0; TRUNCATE TABLE `CNV`; LOCK TABLES `CNV` WRITE; +INSERT INTO `CNV` (`CNVID`, `CandID`, `Description`, `Type`, `EventName`, `Common_CNV`, `Characteristics`, `CopyNumChange`, `Inheritance`, `ArrayReport`, `Markers`, `ArrayReportDetail`, `ValidationMethod`, `PlatformID`, `Chromosome`, `Strand`, `EndLoc`, `StartLoc`, `Symbol`, `Name`, `NCBIID`, `OfficialSymbol`, `OfficialName`) VALUES (1,300165,NULL,'gain',NULL,'Y','Unknown',NULL,'unknown','Normal',NULL,NULL,NULL,1,'chr1','+',11007,11008,NULL,NULL,NULL,NULL,NULL); +INSERT INTO `CNV` (`CNVID`, `CandID`, `Description`, `Type`, `EventName`, `Common_CNV`, `Characteristics`, `CopyNumChange`, `Inheritance`, `ArrayReport`, `Markers`, `ArrayReportDetail`, `ValidationMethod`, `PlatformID`, `Chromosome`, `Strand`, `EndLoc`, `StartLoc`, `Symbol`, `Name`, `NCBIID`, `OfficialSymbol`, `OfficialName`) VALUES (2,300165,NULL,'unknown',NULL,'Y','Unknown',NULL,'unknown','Normal',NULL,NULL,NULL,1,'chr1','-',11009,11010,NULL,NULL,NULL,NULL,NULL); +INSERT INTO `CNV` (`CNVID`, `CandID`, `Description`, `Type`, `EventName`, `Common_CNV`, `Characteristics`, `CopyNumChange`, `Inheritance`, `ArrayReport`, `Markers`, `ArrayReportDetail`, `ValidationMethod`, `PlatformID`, `Chromosome`, `Strand`, `EndLoc`, `StartLoc`, `Symbol`, `Name`, `NCBIID`, `OfficialSymbol`, `OfficialName`) VALUES (3,300141,NULL,'unknown',NULL,'Y','Unknown',NULL,'unknown','Normal',NULL,NULL,NULL,1,'chr1','+',11007,11008,NULL,NULL,NULL,NULL,NULL); +INSERT INTO `CNV` (`CNVID`, `CandID`, `Description`, `Type`, `EventName`, `Common_CNV`, `Characteristics`, `CopyNumChange`, `Inheritance`, `ArrayReport`, `Markers`, `ArrayReportDetail`, `ValidationMethod`, `PlatformID`, `Chromosome`, `Strand`, `EndLoc`, `StartLoc`, `Symbol`, `Name`, `NCBIID`, `OfficialSymbol`, `OfficialName`) VALUES (4,300162,NULL,'unknown',NULL,'Y','Unknown',NULL,'unknown','Normal',NULL,NULL,NULL,1,'chr1','+',11007,11008,NULL,NULL,NULL,NULL,NULL); UNLOCK TABLES; SET FOREIGN_KEY_CHECKS=1; diff --git a/raisinbread/RB_files/RB_genomic_cpg.sql b/raisinbread/RB_files/RB_genomic_cpg.sql index f9f7fdd9753..63af9bf214e 100644 --- a/raisinbread/RB_files/RB_genomic_cpg.sql +++ b/raisinbread/RB_files/RB_genomic_cpg.sql @@ -1,5 +1,9 @@ SET FOREIGN_KEY_CHECKS=0; TRUNCATE TABLE `genomic_cpg`; LOCK TABLES `genomic_cpg` WRITE; +INSERT INTO `genomic_cpg` (`sample_label`, `cpg_name`, `beta_value`) VALUES ('sl573847','CPG_573847',1.000); +INSERT INTO `genomic_cpg` (`sample_label`, `cpg_name`, `beta_value`) VALUES ('sl573848','CPG_573848',1.000); +INSERT INTO `genomic_cpg` (`sample_label`, `cpg_name`, `beta_value`) VALUES ('sl573851','CPG_573851',1.000); +INSERT INTO `genomic_cpg` (`sample_label`, `cpg_name`, `beta_value`) VALUES ('sl573852','CPG_573852',1.000); UNLOCK TABLES; SET FOREIGN_KEY_CHECKS=1; diff --git a/raisinbread/RB_files/RB_genomic_cpg_annotation.sql b/raisinbread/RB_files/RB_genomic_cpg_annotation.sql index 67fe17c80bb..124d3d1cd8c 100644 --- a/raisinbread/RB_files/RB_genomic_cpg_annotation.sql +++ b/raisinbread/RB_files/RB_genomic_cpg_annotation.sql @@ -1,5 +1,9 @@ SET FOREIGN_KEY_CHECKS=0; TRUNCATE TABLE `genomic_cpg_annotation`; LOCK TABLES `genomic_cpg_annotation` WRITE; +INSERT INTO `genomic_cpg_annotation` (`cpg_name`, `address_id_a`, `probe_seq_a`, `address_id_b`, `probe_seq_b`, `design_type`, `color_channel`, `genome_build`, `probe_snp_10`, `gene_name`, `gene_acc_num`, `gene_group`, `island_loc`, `island_relation`, `fantom_promoter_loc`, `dmr`, `enhancer`, `hmm_island_loc`, `reg_feature_loc`, `reg_feature_group`, `dhs`, `platform_id`, `Chromosome`, `Strand`, `EndLoc`, `StartLoc`) VALUES ('CPG_573847',NULL,NULL,NULL,NULL,NULL,'Red',NULL,NULL,NULL,NULL,NULL,NULL,'island',NULL,'DMR',NULL,NULL,NULL,NULL,NULL,1,'chr1','+',11007,11008); +INSERT INTO `genomic_cpg_annotation` (`cpg_name`, `address_id_a`, `probe_seq_a`, `address_id_b`, `probe_seq_b`, `design_type`, `color_channel`, `genome_build`, `probe_snp_10`, `gene_name`, `gene_acc_num`, `gene_group`, `island_loc`, `island_relation`, `fantom_promoter_loc`, `dmr`, `enhancer`, `hmm_island_loc`, `reg_feature_loc`, `reg_feature_group`, `dhs`, `platform_id`, `Chromosome`, `Strand`, `EndLoc`, `StartLoc`) VALUES ('CPG_573848',NULL,NULL,NULL,NULL,NULL,'Red',NULL,NULL,NULL,NULL,NULL,NULL,'island',NULL,'DMR',NULL,NULL,NULL,NULL,NULL,1,'chr1','+',11007,11008); +INSERT INTO `genomic_cpg_annotation` (`cpg_name`, `address_id_a`, `probe_seq_a`, `address_id_b`, `probe_seq_b`, `design_type`, `color_channel`, `genome_build`, `probe_snp_10`, `gene_name`, `gene_acc_num`, `gene_group`, `island_loc`, `island_relation`, `fantom_promoter_loc`, `dmr`, `enhancer`, `hmm_island_loc`, `reg_feature_loc`, `reg_feature_group`, `dhs`, `platform_id`, `Chromosome`, `Strand`, `EndLoc`, `StartLoc`) VALUES ('CPG_573851',NULL,NULL,NULL,NULL,NULL,'Red',NULL,NULL,NULL,NULL,NULL,NULL,'island',NULL,'DMR',NULL,NULL,NULL,NULL,NULL,1,'chr1','+',11007,11008); +INSERT INTO `genomic_cpg_annotation` (`cpg_name`, `address_id_a`, `probe_seq_a`, `address_id_b`, `probe_seq_b`, `design_type`, `color_channel`, `genome_build`, `probe_snp_10`, `gene_name`, `gene_acc_num`, `gene_group`, `island_loc`, `island_relation`, `fantom_promoter_loc`, `dmr`, `enhancer`, `hmm_island_loc`, `reg_feature_loc`, `reg_feature_group`, `dhs`, `platform_id`, `Chromosome`, `Strand`, `EndLoc`, `StartLoc`) VALUES ('CPG_573852',NULL,NULL,NULL,NULL,NULL,'Red',NULL,NULL,NULL,NULL,NULL,NULL,'island',NULL,'DMR',NULL,NULL,NULL,NULL,NULL,1,'chr1','+',11007,11008); UNLOCK TABLES; SET FOREIGN_KEY_CHECKS=1; diff --git a/raisinbread/RB_files/RB_genomic_sample_candidate_rel.sql b/raisinbread/RB_files/RB_genomic_sample_candidate_rel.sql index 858ea25d6f5..b35a5a11070 100644 --- a/raisinbread/RB_files/RB_genomic_sample_candidate_rel.sql +++ b/raisinbread/RB_files/RB_genomic_sample_candidate_rel.sql @@ -1,5 +1,9 @@ SET FOREIGN_KEY_CHECKS=0; TRUNCATE TABLE `genomic_sample_candidate_rel`; LOCK TABLES `genomic_sample_candidate_rel` WRITE; +INSERT INTO `genomic_sample_candidate_rel` (`sample_label`, `CandID`) VALUES ('sl573852',300139); +INSERT INTO `genomic_sample_candidate_rel` (`sample_label`, `CandID`) VALUES ('sl573851',300162); +INSERT INTO `genomic_sample_candidate_rel` (`sample_label`, `CandID`) VALUES ('sl573847',300165); +INSERT INTO `genomic_sample_candidate_rel` (`sample_label`, `CandID`) VALUES ('sl573848',300165); UNLOCK TABLES; SET FOREIGN_KEY_CHECKS=1;