Dataset Request GSE48624

[sjwright04]

Hi, me and my team are trying to do a project using the dataset linked below. We have tried downloading the dataset multiple times, but none have included the expression matrix .tsv file all we are getting is the .json and .tsv metadata files. We hope the expression matrix is available as we cannot do our project without it.
https://www.refine.bio/experiments/GSE48624/the-effect-of-listening-to-music-on-human-transcriptome

[davidsmejia]

Hello and thanks for making this issue. I'm an engineer at the lab and I was able to confirm your results. I received a success email and when I opened up the zip it was also missing the expression matrix. I took a look at the logs for the job that compiled the download and It looks like there is an issue with the data in this experiment. I will open an issue that aims to resolve the issue you are encountering but I can't say exactly when the changes will be deployed and make this dataset available.

[sjwright04]

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[davidsmejia]

I don't expect this to be available on refinebio by Wednesday. However, we aren’t processing from raw, so if the quantile normalization and gene identifier conversion isn’t important you can download the expression data from GEO directly.

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE48624