You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
In certain edge case situations, serological vs. molecular typings can be considered a match by the matching algorithm (and therefore brought back in the search results), but then assigned a mismatch grade by the scoring portion of the algorithm.
Some examples are noted below:
B*40:01:02 vs B61
This match is assigned a match count of 2/2 by the matching algorithm, yet the scoring algorithm calls it a mismatch.
The score is due to the allele B*40:01 mapping to B60, which is a mismatch to B61.
B12 vs B51 - share 51:42P ;51:42 maps to both 44 and 51 in rel_dna_ser file.
B12 vs B49 - share 44:42 (44 and 21) and 45:04 (45 and 21)
B65 vs B*14:01 - share 14:01P - 14:80/14:81 are both mapped directly to 14
B21 vs B*44:ADYGF - actually called a Broad serology match because 44:42 maps to 44 and 21.
B21 vs B44 - share 44:42 (44 and 21)
Summary
In all cases, the donors were called matches as they shared at least one P group with the patient typing - however, they were also deemed serology mismatches due to not having any overlapping serology.
It is admittedly confusing, but cannot be “fixed” without consultation with search experts. Also, the ser vs ser cases are expected to be very low frequency as patients are not typed with serology these days.
matching-algorithmWork relates to the algorithm which matches and scores donors for given patient HLAalgorithmicInvolves a change to the algorithmic logic of Atlas, likely needing approval from HLA experts.
1 participant
Converted from issue
This discussion was converted from issue #729 on February 10, 2023 11:19.
Heading
Bold
Italic
Quote
Code
Link
Numbered list
Unordered list
Task list
Attach files
Mention
Reference
Menu
reacted with thumbs up emoji reacted with thumbs down emoji reacted with laugh emoji reacted with hooray emoji reacted with confused emoji reacted with heart emoji reacted with rocket emoji reacted with eyes emoji
-
In certain edge case situations, serological vs. molecular typings can be considered a match by the matching algorithm (and therefore brought back in the search results), but then assigned a mismatch grade by the scoring portion of the algorithm.
Some examples are noted below:
B*40:01:02
vsB61
This match is assigned a match count of 2/2 by the matching algorithm, yet the scoring algorithm calls it a mismatch.
The score is due to the allele B*40:01 mapping to B60, which is a mismatch to B61.
B12 vs B51 - share 51:42P ;51:42 maps to both 44 and 51 in rel_dna_ser file.
B12 vs B49 - share 44:42 (44 and 21) and 45:04 (45 and 21)
B65 vs B*14:01 - share 14:01P - 14:80/14:81 are both mapped directly to 14
B21 vs B*44:ADYGF - actually called a Broad serology match because 44:42 maps to 44 and 21.
B21 vs B44 - share 44:42 (44 and 21)
Summary
In all cases, the donors were called matches as they shared at least one P group with the patient typing - however, they were also deemed serology mismatches due to not having any overlapping serology.
It is admittedly confusing, but cannot be “fixed” without consultation with search experts. Also, the ser vs ser cases are expected to be very low frequency as patients are not typed with serology these days.
Beta Was this translation helpful? Give feedback.
All reactions