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1. stitcher.py stitcher.py Public

   stitcher.py reconstructs molecules from Smart-seq3 data.

   Python 7 4

2. sandberg-lab/txburst sandberg-lab/txburst Public

   Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Larsson et. al 2019).

   Jupyter Notebook 37 13

3. sandberg-lab/Spreading-Correction sandberg-lab/Spreading-Correction Public

   Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).

   Jupyter Notebook 15 4

4. sandberg-lab/aRME_and_bursting sandberg-lab/aRME_and_bursting Public

   Code for analysis described in the article "Transcriptional bursts explain autosomal random monoallelic expression and affect allelic imbalance" (Larsson et. al 2021).

   Jupyter Notebook 1 1

5. sandberg-lab/NASC-seq sandberg-lab/NASC-seq Public

   Code and analysis pipeline for NASC-seq.

   Python 11 2