diff --git a/binchicken/workflow/coassemble.smk b/binchicken/workflow/coassemble.smk index 8697eb59..e356c00d 100644 --- a/binchicken/workflow/coassemble.smk +++ b/binchicken/workflow/coassemble.smk @@ -863,7 +863,7 @@ rule aviary_recover: conda_prefix = config["conda_prefix"] if config["conda_prefix"] else ".", singlem_metapackage = config["singlem_metapackage"], fast = "--binning-only --refinery-max-iterations 0" if config["aviary_speed"] == FAST_AVIARY_MODE else "", - extra_binners = "--extra-binners " + " ".join(config["extra_binners"]) if config["extra_binners"] else "", + extra_binners = "--extra-binners " + " ".join(config["aviary_extra_binners"]) if config["aviary_extra_binners"] else "", snakemake_profile = f"--snakemake-profile {config['snakemake_profile']}" if config["snakemake_profile"] else "", cluster_retries = f"--cluster-retries {config['cluster_retries']}" if config["cluster_retries"] else "", tmpdir = f"TMPDIR={config['tmpdir']}" if config["tmpdir"] else "",