dcc-ops bootstrap fails right at first package installation

[brainstorm]

An apt-get update right before installing packages would solve this:

$ git clone https://github.com/BD2KGenomics/dcc-ops.git && cd dcc-ops && sudo bash install_bootstrap
Cloning into 'dcc-ops'...
remote: Counting objects: 1846, done.
remote: Compressing objects: 100% (11/11), done.
remote: Total 1846 (delta 1), reused 6 (delta 0), pack-reused 1834
Receiving objects: 100% (1846/1846), 1.67 MiB | 1.08 MiB/s, done.
Resolving deltas: 100% (1158/1158), done.
Checking connectivity... done.
UCSC CLOUD COMMONS INSTALLATION BOOTSTRAPPER
-----------------------------------------------------------------------------
This tool will setup a single host which has all of the infrastructure we
use to run the UCSC Cloud Commons reference implemenation used by the
UCSC Genomics Institute.  See https://github.com/BD2KGenomics/dcc-ops

This system requires the following:
* Docker support in your Linux distribution (Ubuntu 16.04 is officially supported).
* AWS credentials, if you are using Amazon AWS.

Note: by default the ethernet device is assumed to be eth0 and this is used to
find the IP address of the host. In some instances on AWS the default ethernet
device is ens3 for example. You can override the eth0 by setting the
ETH_DEV env variable before running this script.

For more information see:

* the main GitHub page: https://github.com/BD2KGenomics/dcc-ops
* the UCSC Genomics Institute - Analysis Core: http://ucsc-cgl.org

DO YOU WISH TO CONTINUE [Y/N]:
Y
Installing various apt packages
It looks like there may have been a problem installing or updated wget and curl:
Reading package lists...
Building dependency tree...
Reading state information...
curl is already the newest version (7.47.0-1ubuntu2.2).
git is already the newest version (1:2.7.4-0ubuntu1.1).
wget is already the newest version (1.17.1-1ubuntu1.2).
The following additional packages will be installed:
  fonts-lato javascript-common libjs-jquery libonig2 libruby2.3 rake ruby
  ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert
  ruby-test-unit ruby2.3 rubygems-integration unzip zip
Suggested packages:
  apache2 | lighttpd | httpd ri ruby-dev bundler
The following NEW packages will be installed:
  fonts-lato javascript-common jq libjs-jquery libonig2 libruby2.3 rake ruby
  ruby-did-you-mean ruby-minitest ruby-mustache ruby-net-telnet
  ruby-power-assert ruby-test-unit ruby2.3 rubygems-integration unzip zip
0 upgraded, 18 newly installed, 0 to remove and 0 not upgraded.
Need to get 6,616 kB of archives.
After this operation, 29.5 MB of additional disk space will be used.
Get:1 http://ap-southeast-2.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 fonts-lato all 2.0-1 [2,693 kB]
Get:2 http://ap-southeast-2.ec2.archive.ubuntu.com/ubuntu xenial/universe amd64 libonig2 amd64 5.9.6-1 [88.1 kB]
Get:3 http://ap-southeast-2.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 javascript-common all 11 [6,066 B]
Get:4 http://ap-southeast-2.ec2.archive.ubuntu.com/ubuntu xenial/universe amd64 jq amd64 1.5+dfsg-1 [144 kB]
Get:5 http://ap-southeast-2.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 libjs-jquery all 1.11.3+dfsg-4 [161 kB]
Get:6 http://ap-southeast-2.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 rubygems-integration all 1.10 [4,966 B]
Get:7 http://ap-southeast-2.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 ruby-did-you-mean all 1.0.0-2 [8,390 B]
Get:8 http://ap-southeast-2.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 ruby-minitest all 5.8.4-2 [36.6 kB]
Get:9 http://ap-southeast-2.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 ruby-net-telnet all 0.1.1-2 [12.6 kB]
Get:10 http://ap-southeast-2.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 ruby-power-assert all 0.2.7-1 [7,668 B]
Get:11 http://ap-southeast-2.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 ruby-test-unit all 3.1.7-2 [60.3 kB]
Err:12 http://ap-southeast-2.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 libruby2.3 amd64 2.3.1-2~16.04
  404  Not Found [IP: 54.253.111.14 80]
Err:13 http://ap-southeast-2.ec2.archive.ubuntu.com/ubuntu xenial-updates/main amd64 ruby2.3 amd64 2.3.1-2~16.04
  404  Not Found [IP: 54.253.111.14 80]
Get:14 http://ap-southeast-2.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 ruby all 1:2.3.0+1 [5,530 B]
Get:15 http://ap-southeast-2.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 rake all 10.5.0-2 [48.2 kB]
Get:16 http://ap-southeast-2.ec2.archive.ubuntu.com/ubuntu xenial/universe amd64 ruby-mustache all 1.0.2-1 [25.3 kB]
Get:17 http://ap-southeast-2.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 unzip amd64 6.0-20ubuntu1 [158 kB]
Get:18 http://ap-southeast-2.ec2.archive.ubuntu.com/ubuntu xenial/main amd64 zip amd64 3.0-11 [158 kB]
Fetched 3,619 kB in 1s (2,052 kB/s)
E: Failed to fetch http://ap-southeast-2.ec2.archive.ubuntu.com/ubuntu/pool/main/r/ruby2.3/libruby2.3_2.3.1-2~16.04_amd64.deb  404  Not Found [IP: 54.253.111.14 80]

E: Failed to fetch http://ap-southeast-2.ec2.archive.ubuntu.com/ubuntu/pool/main/r/ruby2.3/ruby2.3_2.3.1-2~16.04_amd64.deb  404  Not Found [IP: 54.253.111.14 80]

E: Unable to fetch some archives, maybe run apt-get update or try with --fix-missing?