update to new pygetm APIs #140
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| name: Build and test | |
| on: | |
| push: | |
| branches: | |
| - "**" | |
| pull_request: | |
| jobs: | |
| install_and_run: | |
| if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name != github.repository | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| RDMAV_FORK_SAFE: 1 | |
| CMAKE_BUILD_PARALLEL_LEVEL: 2 | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest", "macos-13", "macos-latest", "windows-latest"] | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - name: Clone fabmos | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: environment.yml | |
| activate-environment: fabmos | |
| - name: List installed conda packages | |
| run: conda export | |
| - name: Customize Windows build | |
| if: matrix.os == 'windows-latest' | |
| run: | | |
| echo '[build_ext]' > setup.cfg | |
| echo 'cmake_opts=-G "MSYS Makefiles"' >> setup.cfg | |
| mv extern/fabm/extern/ersem extern/fabm/extern/ersem_bck | |
| mv extern/fabm/extern/ogs extern/fabm/extern/ogs_bck | |
| - name: Compile and install fabmos | |
| run: pip install -v . | |
| - name: Download TMM setup | |
| run: curl -s http://kelvin.earth.ox.ac.uk/spk/Research/TMM/TransportMatrixConfigs/MITgcm_2.8deg.tar -o MITgcm_2.8deg.tar | |
| - name: Extract TMM setup | |
| run: tar -xvf MITgcm_2.8deg.tar --exclude "MITgcm_2.8deg/GCM/basepath.mat" --exclude "MITgcm_2.8deg/BiogeochemData/basepath.mat" | |
| - name: Run TMM setup in serial | |
| run: | | |
| cd MITgcm_2.8deg | |
| python ../examples/tmm/tracer.py --stop_time="2000-02-01 00:00:00" | |
| env: | |
| I_MPI_FABRICS: shm #:ofi | |
| FI_PROVIDER: sockets #tcp | |
| - name: Run TMM setup in parallel | |
| run: | | |
| cd MITgcm_2.8deg | |
| mpiexec -n 2 python ../examples/tmm/tracer.py --stop_time="2000-02-01 00:00:00" | |
| env: | |
| I_MPI_FABRICS: shm #:ofi | |
| FI_PROVIDER: sockets #tcp | |
| - name: Test reproducibility for different subdomain decompositions | |
| run: | | |
| cd MITgcm_2.8deg | |
| pygetm-test-scaling --nmax 2 --compare output.nc ../examples/tmm/tracer.py --stop_time="2000-02-01 00:00:00" | |
| env: | |
| I_MPI_FABRICS: shm #:ofi | |
| FI_PROVIDER: sockets #tcp |