diff --git a/model-desc/cds-file-examples.zip b/model-desc/cds-file-examples.zip index 1d7f482..fc100ed 100644 Binary files a/model-desc/cds-file-examples.zip and b/model-desc/cds-file-examples.zip differ diff --git a/model-desc/cds-model-props.yml b/model-desc/cds-model-props.yml index 42a81cb..a5878e5 100644 --- a/model-desc/cds-model-props.yml +++ b/model-desc/cds-model-props.yml @@ -1,11 +1,11 @@ PropDefinitions: - #crdc_id + # crdc_id crdc_id: - Desc: The crdc_id is a unique identifier that is generated by Data Hub + Desc: The crdc_id is a unique identifier that is generated by CRDC Submission Portal Type: string Tags: Template: 'No' - #image + # image study_link_id: Desc: The study_link_id is ID property for the node image. It should consist of a string and a number. Req: true @@ -159,7 +159,7 @@ PropDefinitions: Code: '2413274' Value: Equipment Manufacturer Model Name Text Version: '2.10' - imaging_sofware: + imaging_software: Desc: The name of the software package that was used to capture, generate, and process the image. Type: string Term: @@ -187,925 +187,962 @@ PropDefinitions: Code: '6161035' Value: ICD-O Origin of Disease Anatomic Site Version: '1.00' - performed_imaging_study_description: - Desc: The textual representation of the certain or salient aspects, characteristics, or features of the imaging study. [Adapted from www.businessdictionary.com] + performed_imaging_study_typeCode: + Desc: A coded value specifying the kind of algorithm used when reconstructing the image from the data acquired during the acquisition process. Req: true Type: string Term: - Origin: caDSR - Original Source: DICOM - Code: '2182389' - Value: Image Study Description 64 Character Text - Version: '2.10' - performed_imaging_study_admittingDiagnosisCode: - Desc: The identified disease(s) or illness(es) at the time of the admission during which imaging was performed. - Req: true - Type: string + Original Source: CDS + Code: "14617551" + Value: Imaging Reconstruction Protocol Type Code" + Version: '1.00' + longitudinal_temporal_event_type: + Desc: The type of event to which Longitudinal Temporal Offset from Event is relative. + Type: number Term: - Origin: caDSR - Original Source: DICOM - Code: '2902328' - Value: Image Study Admitting Diagnosis Description 64 Character Text + Original Source: CDS + Code: '14670294' + Value: Longitudinal Study Temporal Event Type Version: '1.00' - performed_imaging_study_nonAcquisitionModalitiesInStudyCode: - Desc: A coded value specifying the type of equipment that created the images in this imaging study other than that used to acquire the original data. - Req: true - Type: string + longitudinal_temporal_event_offset: + Desc: An offset in days from a particular event of significance. May be fractional. In the context of a clinical trial, this is often the days since enrollment, or the baseline imaging Study. + Type: number Term: - Origin: caDSR - Original Source: DSS - Code: '12137353' - Value: Imaging Technology DICOM Modality Type + Original Source: CDS + Code: '14612661' + Value: Longitudinal Study Temporal Offset Number Version: '1.00' - performed_imaging_study_lossyImageCompressionIndicator: - Desc: Specifies whether any images in the study are irreversibly altered during encoding at any time during its life. + #MultiplexMicroscopy: + MultiplexMicroscopy_id: + Desc: MultiplexMicroscopy identifier + Type: string Req: true - Enum: - - "0" - - "1" + Key: true + tumor_tissue_type: + Desc: Text that describes the kind of disease present in the tumor specimen as related to a specific timepoint (add rows to select multiple values along with timepoints) + Type: string Term: - Origin: caDSR - Code: '2659474' - Value: Image Lossy Compression Code + Original Source: HTAN + Code: '3288124' + Value: Tumor Tissue Disease Description Type Version: '1.00' - performed_imaging_study_summary: - Desc: A brief statement about the characteristics of this element, which is intended for use by the radiologist, technologist and/or physicist during management of the imaging protocol to understand the characteristics of the element in the protocol. - Req: true + working_distance: + Desc: The working distance of the lens, expressed as a floating point number. Floating point > 0. Size needs to be specified in microns (um) Type: string Term: - Origin: caDSR - Original Source: CDS - Code: '14670299' - Value: Imaging Study Process Protocol Element Summary Text + Original Source: HTAN + Code: '7788943' + Value: Microscope Device Working Distance Float Value Version: '1.00' - performed_imaging_study_primaryAnatomicSiteCode: - Desc: A coded value specifying the anatomic location that is the focus of this imaging process protocol element. + imaging_assay_type: + Desc: Type of imaging assay Req: true Type: string Term: - Origin: caDSR - Original Source: CDS - Code: '14612662' - Value: Image Study Primary Anatomic Site Sequence of Items Text + Original Source: HTAN + Code: '7789196' + Value: Imaging Assay Technology Type Version: '1.00' - performed_imaging_study_acquisitionTypeCode: - Desc: A coded value specifying spatial aspects of the mechanism of data collection. - Req: true + pyramid: + Desc: The data file contains an image pyramid Type: string Term: - Origin: caDSR - Original Source: CDS - Code: '14670301' - Value: Image Study Spatial Acquisition Type Code + Original Source: HTAN + Code: '7788945' + Value: Image Processing Pyramid Representation True False Indicator Version: '1.00' - performed_imaging_study_cardiacSynchronizationTechniqueCode: - Desc: The means used to coordinate the collection or reconstruction of data with the cardiac cycle. - Enum: - - REALTIME - - PROSPECTIVE - - RETROSPECTIVE - - PACED - - NONE + physical_size_x: + Desc: Physical size (X-dimension) of a pixel. Floating point value > 0. Size needs to be specified in microns (um) + Type: string Term: - Origin: caDSR - Original Source: CDS - Code: '14617521' - Value: Image Study Cardiac Synchronization Technique Code Name + Original Source: HTAN + Code: '7786584' + Value: Image Processing Pyramid Representation True False Indicator Version: '1.00' - performed_imaging_study_dataCollectionDiameter: - Desc: The diameter of the region over which information is acquired. - Req: true + physical_size_y: + Desc: Physical size (Y-dimension) of a pixel. Floating point value > 0. Size needs to be specified in microns (um) Type: string Term: - Origin: caDSR - Original Source: CDS - Code: '14612665' - Value: Image Acquisition Data Collection Location Diameter Number + Original Source: HTAN + Code: '7786585' + Value: Pixel Y-Dimension Float Value Version: '1.00' - performed_imaging_study_respiratoryMotionTechniqueCode: - Desc: The means to be used to coordinate the collection or reconstruction of data with breathing. - Req: true - Enum: - - BREATH-HOLD - - REALTIME - - GATING - - TRACKING - - RETROSPECTIVE - - CORRECTION - - NONE + physical_size_z: + Desc: Physical size (Z-dimension) of a pixel. Floating point value > 0. Size needs to be specified in microns (um) + Type: string Term: - Origin: caDSR - Original Source: CDS - Code: '14617522' - Value: Image Study Respiratory Motion Technique Code Name + Original Source: HTAN + Code: '7786586' + Value: Pixel Z-Dimension Float Value Version: '1.00' - performed_imaging_study_bodyPositionCode: - Desc: A coded value specifying the 3-dimensional spatial orientation of a subject during this imaging acquisition protocol element. - Enum: - - Supine - - Trendelenburg - - Standing + size_c: + Desc: Number of channels. Integer >= 1 + Type: string Term: - Origin: caDSR - Original Source: CDS - Code: '14617523' - Value: Image Study Body Position Name + Code: '7794859' + Value: OME TIFF Channel Count Version: '1.00' - performed_imaging_study_typeCode: - Desc: A coded value specifying the kind of algorithm used when reconstructing the image from the data acquired during the acquisition process. - Req: true + size_t: + Desc: Number of time points. Integer >= 1 Type: string Term: - Origin: caDSR - Original Source: CDS - Code: "14617551" - Value: Imaging Reconstruction Protocol Type Code" + Code: '7794860' + Value: OME TIFF Timepoint Count Version: '1.00' - performed_imaging_study_algorithmCode: - Desc: A coded value specifying the algorithm to use when reconstructing the image from the data acquired during the acquisition process - Req: true + size_x: + Desc: 'Size of image: X dimension (in pixels). Integer >= 1' Type: string Term: - Origin: caDSR - Code: '14617557' - Value: Imaging Reconstruction Protocol Algorithm Code Text + Code: '7788567' + Value: OME TIFF X-Dimension Pixel Measurement Version: '1.00' - performed_imaging_study_reconstructionFieldOfViewHeight: - Desc: The vertical dimension of the rectangular region from which data is used in creating the reconstruction of the image. - Req: true + size_y: + Desc: 'Size of image: Y dimension (in pixels). Integer >= 1' Type: string Term: - Origin: caDSR - Code: '14612672' - Value: Imaging Reconstruction Protocol Field of View Height Number + Code: '7788568' + Value: OME TIFF Y-Dimension Pixel Measurement Version: '1.00' - performed_imaging_study_reconstructionFieldOfViewWidth: - Desc: The horizontal dimension of the rectangular region from which data is used in creating the reconstruction of the image. - Req: true + size_z: + Desc: 'Size of image: Z dimension (in pixels). Integer >= 1' Type: string Term: - Origin: caDSR - Code: '14612674' - Value: Imaging Reconstruction Protocol Field of View Width Number + Code: '7788569' + Value: OME TIFF Z-Dimension Pixel Measurement Version: '1.00' - performed_imaging_study_reconstructionDiameter: - Desc: The diameter of the region from which data is used in creating the reconstruction of the image. + channel_metadata_filename: + Desc: File name of uploaded companion CSV file containing channel-level metadata details Req: true Type: string Term: - Origin: caDSR - Code: '2182085' - Value: Reconstruction Diameter in Millimeter(s) + Original Source: HTAN + Code: '7787678' + Value: Channel Analysis Metadata Electronic File Name Text Version: '1.00' - performed_imaging_study_sliceThickness: - Desc: The cross plane dimension of the reconstructed image. - Req: true + channel_metadata_file_url_in_cds: + Desc: '' Type: string Term: - Origin: caDSR - Code: '3113185' - Value: Image Plane Slice Thickness Float or Fixed-point Millimeter Number - Version: '2.00' - performed_imaging_study_reconstructionInterval: - Desc: The cross plane distance between the centers of adjacent, parallel reconstructed images. + Original Source: CDS + Code: '11556141' + Value: Electronic File Pathname Text + Version: '1.00' + channel_id: + Desc: The unique channel identifier for each channel in this image must match the corresponding field in the OME-TIFF header Req: true Type: string Term: - Origin: caDSR - Code: '14612682' - Value: Imaging Reconstruction Protocol Reconstruction Interval Millimeter Number + Code: '14765171' + Value: OME Tagged Image File Format Channel Identifier Version: '1.00' - longitudinal_temporal_event_type: - Desc: The type of event to which Longitudinal Temporal Offset from Event is relative. - Type: number + channel_name: + Desc: Channel label for each channel in this image must match the corresponding field in the OME-TIFF header + Req: true + Type: string Term: - Origin: caDSR - Original Source: CDS - Code: '14670294' - Value: Longitudinal Study Temporal Event Type + Code: '14765172' + Value: OME Tagged Image File Format Channel Name Version: '1.00' - longitudinal_temporal_event_offset: - Desc: An offset in days from a particular event of significance. May be fractional. In the context of a clinical trial, this is often the days since enrollment, or the baseline imaging Study. - Type: number + cycle_number: + Desc: 'the cycle # in which the co-listed reagent(s) was(were) used' + Type: string Term: - Origin: caDSR Original Source: CDS - Code: '14612661' - Value: Longitudinal Study Temporal Offset Number + Code: '14765176' + Value: Multiplex Imaging Reagent Cycle Number Integer Version: '1.00' - CTAquisitionProtocolElement_singleCollimationWidth: - Desc: The width of a single row of acquired data. The units are of linear distince, e.g. mm. + sub_cycle_number: + Desc: 'sub-cycle #' Type: string Term: - Origin: caDSR - Code: '2903347' - Value: Image Single Collimation Width 8 Byte Millimeter Number + Original Source: CDS + Code: '14765180' + Value: Multiplex Imaging Reagent Sub-Cycle Number Integer Version: '1.00' - CTAquisitionProtocolElement_totalCollimationWidth: - Desc: The width of the total collimation over the area of active x-ray detection. The units are of linear distince, e.g. mm. - Req: true + target_name: + Desc: short descriptive name (abbreviation) for this target (antigen) Type: string Term: - Origin: caDSR - Code: '2903328' - Value: Image Total Collimation Width 8 Byte Millimeter Number + Original Source: CDS + Code: "14765180" + Value: "Multiplex Imaging Reagent Sub-Cycle Number Integer" Version: '1.00' - CTAquisitionProtocolElement_gantryDetectorTilt: - Desc: Nominal angle of tilt in degrees of the scanning gantry. The units are of plane angle , e.g. degrees. Zero degrees means the gantry is not tilted, negative degrees are when the top of the gantry is tilted away from where the table enters the gantry. - Req: true + antibody_name: + Desc: short descriptive name for this antibody Type: string Term: - Origin: caDSR - Original Source: caDSR - Code: '2656117' - Value: Image Gantry Detector Tilt 16 Character Number + Original Source: CDS + Code: '14765184' + Value: Tissue Slide IHC Antibody Used Type Version: '1.00' - CTAquisitionProtocolElement_spiralPitchFactor: - Desc: Ratio of the distance that the table moves during a complete revolution of the source around the gantry orbit, to the width of the total collimation over the area of active x-ray detection. The units are of unity. - Req: true + rrid_identifier: + Desc: Research Resource Identifier Type: string Term: - Origin: caDSR - Code: '2414556' - Value: Computed Tomography Pitch Factor Number + Original Source: CDS + Code: '14767247' + Value: Multiplex Imaging Research Resource Identifier Text Version: '1.00' - CTAquisitionProtocolElement_ctdiVol: - Desc: The average dose over the total volume scanned for the selected CT conditions of operation (calculated according to IEC 60601-2-44, Ed.2.1 (Clause 29.1.103.4)). The units are energy dose, e.g. mGy. - Req: true + fluorophore: + Desc: Fluorescent dye label Type: string Term: - Origin: caDSR - Code: '3882991' - Value: Computed Tomography Dose Index Volume Quantity 8 Byte Number + Original Source: CDS + Code: '14767255' + Value: Multiplex Imaging Fluorescent Dye Text Version: '1.00' - CTAquisitionProtocolElement_ctdiPhantomTypeCode: - Desc: The type of phantom to use for CTDI measurement according to IEC 60601-2-44 - Req: true + clone: + Desc: Unique clone identifier Type: string Term: - Origin: caDSR - Code: '14612683' - Value: Imaging Technique CTDI Phantom Type Sequence of Items Text + Original Source: CDS + Code: '14767258' + Value: Multiplex Imaging Clone Unique Identifier Version: '1.00' - CTAquisitionProtocolElement_kVp: - Desc: Peak kilovoltage output of the x-ray generator. The units are of electrical potential. - Req: true + lot: + Desc: lot number from vendor Type: string Term: - Origin: caDSR - Code: '2904496' - Value: Image Kilovolt Peak Float 16 Number - Version: '1.00' - CTAquisitionProtocolElement_exposureModulationType_Code: - Desc: The manner in which tube current is varied in order to limit the dose. - Enum: - - NONE - - ANGULAR - - LONGITUDINAL - - ECG-BASED - - ORGAN-BASED - Term: - - Origin: caDSR - Code: '14617524' - Value: Imaging Technique Exposure Modulation Type + Original Source: CDS + Code: '14769695' + Value: Multiplex Imaging Vendor Lot Number Text Version: '1.00' - CTImageReconstructionProtocolElement_convolutionKernel: - Desc: A label describing the mathematical operations used to reconstruct images from the acquired data. The values for this attribute are vendor specific and not coded. + catalog_number: + Desc: catalog number from vendor Type: string Term: - Origin: caDSR - Code: '2656119' - Value: Image Convolution Kernel 16 Character Text + Original Source: CDS + Code: '14767261' + Value: Multiplex Imaging Vendor Catalog Number Text Version: '1.00' - CTImageReconstructionProtocolElement_convolutionKernelGroupCode: - Desc: A coded value specifying the family of mathematical operations to use to reconstruct images from the acquired data + excitation_wavelength: + Desc: center/peak of the excitation spectrum (nm) Type: string Term: - Origin: caDSR - Code: '14617525' - Value: Imaging Technique Convolution Kernel Group Name + Original Source: CDS + Code: '14765187' + Value: Multiplex Imaging Excitation Wavelength Number Version: '1.00' - MRImageAcquisitionProtocolElement_echoPulseSequenceCategoryCode: - Desc: A coded value specifying an echo category of pulse sequences. - Enum: - - SPIN - - GRADIENT - - BOTH + emission_wavelength: + Desc: center/peak of the emission spectrum (nm) + Type: string Term: - Origin: caDSR Original Source: CDS - Code: '14645641' - Value: Image Acquisition Spin-Echo Pulse Sequence Code Category + Code: '14767264' + Value: Multiplex Imaging Emission Wavelength Number Version: '1.00' - MRImageAcquisitionProtocolElement_diffusionBValue: - Desc: The factor by which the acquisition is sensitized to the Brownian motion of water molecules. The units are of time/area, e.g. s/mm2 + excitation_bandwidth: + Desc: nominal width of excitation spectrum (nm) Type: string Term: - Origin: caDSR - Code: '14607706' - Value: Imaging Technique MR Diffusion B Value Number + Original Source: CDS + Code: '14765190' + Value: Multiplex Imaging Excitation Bandwidth Number Version: '1.00' - MRImageAcquisitionProtocolElement_diffusionDirectionalityCode: - Desc: A coded value specifying whether diffusion conditions for the frame are directional, or isotropic with respect to direction - Enum: - - DIRECTIONAL - - BMATRIX - - ISOTROPIC - - NONE + emission_bandwidth: + Desc: nominal width of emission spectrum (nm) + Type: string Term: - Origin: caDSR - Code: '14616426' - Value: Imaging Technique Diffusion Directionality Type + Original Source: CDS + Code: '14765193' + Value: Multiplex Imaging Emission Bandwidth Number Version: '1.00' - MRImageAcquisitionProtocolElement_magneticFieldStrength: - Desc: "A vector quantity indicating the ability of a magnetic field to exert a force on moving electric charges. [The American Heritage\xAE Science Dictionary]. The units are of magnetic flux density, e.g. tesla." + metal_isotope_element_abbreviation: + Desc: Element abbreviation Type: string Term: - Origin: caDSR - Code: '14607707' - Value: Imaging Technique Magnetic Field Strength Number + Original Source: CDS + Code: '14765198' + Value: Multiplex Imaging Isotope Abbreviation Name Version: '1.00' - MRImageAcquisitionProtocolElement_resonantNucleusCode: - Desc: A coded value specifying the atomic nucleus that is the target of the acquisition - Enum: - - 1H - - 3HE - - 7LI - - 13C - - 19F - - 23NA - - 31P - - 129XE + metal_isotope_element_mass: + Desc: Element mass number + Type: string Term: - Origin: caDSR - Code: '14616427' - Value: Image Acquisition Resonant Nucleus Type + Original Source: CDS + Code: '14765201' + Value: Multiplex Imaging Isotope Element Number Identifier Version: '1.00' - MRImageAcquisitionProtocolElement_acquisitionContrastCode: - Desc: A coded value specifying the inherent (as opposed to exogenous) contrast in the acquisition. - Enum: - - DIFFUSION - - FLOW_ENCODED_Flow Encoded contrast - - FLUID_ATTENUATED_Fluid Attenuated T2 weighted contrast - - PERFUSION_Perfusion weighted contrast - - PROTON_DENSITY_Proton Density weighted contrast - - STIR_Short Tau Inversion Recovery - - TAGGING_Superposition of thin saturation bands onto image - - T1_T1 weighted contrast - - T2_T2 weighted contrast - - T2_STAR_T2* weighted contrast - - TOF_Time Of Flight weighted contrast + oligo_barcode_upper_strand: + Desc: DNA barcode used for labeling + Type: string Term: - Origin: caDSR - Code: '14616428' - Value: Image Acquisition Contrast Type + Original Source: CDS + Code: '14765205' + Value: Multiplex Imaging Oligonucleotide Barcode Upper Strand Text Version: '1.00' - MRImageAcquisitionProtocolElement_inversionRecoveryIndicator: - Desc: Specifies whether an inversion recovery preparatory sequence is used in the acquisition. + oligo_barcode_lower_strand: + Desc: DNA barcode used for labeling Type: string Term: - Origin: caDSR - Code: '14607722' - Value: Image Acquisition Inversion Recovery Indicator + Original Source: CDS + Code: '14765208' + Value: Multiplex Imaging Oligonucleotide Barcode Lower Strand Text Version: '1.00' - MRImageAcquisitionProtocolElement_pulseSequenceName: - Desc: Name of the pulse sequence that is used for the acquisition. This is usually a vendor-specific name. + dilution: + Desc: Final dilution ratio used in experiment Type: string Term: - Origin: caDSR - Code: '14608594' - Value: Image Acquisition Pulse Sequence Name Text + Code: '14767270' + Value: Multiplex Imaging Final Dilution Ratio Number Version: '1.00' - MRImageAcquisitionProtocolElement_multipleSpinEchoIndicator: - Desc: Specifies whether different lines in k-space are collected for a single frame. + concentration: + Desc: Final concentration used in experiment Type: string Term: - Origin: caDSR - Code: '14608595' - Value: Imaging Technique Multiple Spin Echo Indicator + Original Source: CDS + Code: '14768386' + Value: Multiplex Imaging Final Concentration Number Version: '1.00' - MRImageAcquisitionProtocolElement_phaseContrastIndicator: - Desc: Specifies whether this is a pulse sequence in which the flowing spins are velocity encoded in phase. + # NonDICOMradiologyAllModalities: + NonDICOMradiologyAllModalities_id: + Desc: NonDICOMradiologyAllModalities identifier + Type: string + Req: true + Key: true + performed_imaging_study_description: + Desc: The textual representation of the certain or salient aspects, characteristics, or features of the imaging study. [Adapted from www.businessdictionary.com] + Req: true Type: string Term: - Origin: caDSR - Code: '14608601' - Value: Image Phase Contrast Indicator - Version: '1.00' - MRImageAcquisitionProtocolElement_timeOfFlightContrastIndicator: - Desc: Specifies whether contrast is created by the inflow of blood in the saturated plane. + Original Source: DICOM + Code: '2182389' + Value: Image Study Description 64 Character Text + Version: '2.10' + performed_imaging_study_admittingDiagnosisCode: + Desc: The identified disease(s) or illness(es) at the time of the admission during which imaging was performed. + Req: true Type: string Term: - Origin: caDSR - Code: '14608649' - Value: Imaging Technique Time of Flight Contrast Indicator + Original Source: DICOM + Code: '2902328' + Value: Image Study Admitting Diagnosis Description 64 Character Text Version: '1.00' - MRImageAcquisitionProtocolElement_arterialSpinLabelingContrastCode: - Desc: A coded value specifying how arterial water is used as a diffusable tracer. + performed_imaging_study_nonAcquisitionModalitiesInStudyCode: + Desc: A coded value specifying the type of equipment that created the images in this imaging study other than that used to acquire the original data. + Req: true Type: string Term: - Origin: caDSR - Code: '14616429' - Value: Imaging Technique Arterial Spin Labeling Contrast Name + Original Source: DSS + Code: '12137353' + Value: Imaging Technology DICOM Modality Type Version: '1.00' - MRImageAcquisitionProtocolElement_steadyStatePulseSequenceCode: - Desc: A coded value specifying how residual transverse magnetization is maintained during the acquisition. + performed_imaging_study_lossyImageCompressionIndicator: + Desc: Specifies whether any images in the study are irreversibly altered during encoding at any time during its life. + Req: true Enum: - - FREE PRECESSION - - TRANSVERSE - - TIME REVERSED - - LONGITUDINAL - - NONE + - "0" + - "1" Term: - Origin: caDSR - Code: '14616430' - Value: Image Acquisition Steady State Pulse Sequence Type + Code: '2659474' + Value: Image Lossy Compression Code Version: '1.00' - MRImageAcquisitionProtocolElement_echoPlanarPulseSequenceIndicator: - Desc: Specifies whether multiple echos of different phase steps are acquired using rephasing gradients instead of repeated 180-degree pulses. + performed_imaging_study_summary: + Desc: A brief statement about the characteristics of this element, which is intended for use by the radiologist, technologist and/or physicist during management of the imaging protocol to understand the characteristics of the element in the protocol. + Req: true Type: string Term: - Origin: caDSR - Code: '14612651' - Value: Image Acquisition Echo Planar Pulse Sequence Indicator + Original Source: CDS + Code: '14670299' + Value: Imaging Study Process Protocol Element Summary Text Version: '1.00' - MRImageAcquisitionProtocolElement_saturationRecoveryIndicator: - Desc: Specifies whether a saturation recovery pulse sequence is used + performed_imaging_study_primaryAnatomicSiteCode: + Desc: A coded value specifying the anatomic location that is the focus of this imaging process protocol element. + Req: true Type: string Term: - Origin: caDSR - Code: '14612652' - Value: Imaging Technique Saturation Recovery Indicator + Original Source: CDS + Code: '14612662' + Value: Image Study Primary Anatomic Site Sequence of Items Text Version: '1.00' - MRImageAcquisitionProtocolElement_spectrallySelectedSuppressionCode: - Desc: A coded value specifying the type of substance-specific signal suppression is used. - Enum: - - FAT - - WATER - - FAT AND WATER - - SILICON GEL - - NONE + performed_imaging_study_acquisitionTypeCode: + Desc: A coded value specifying spatial aspects of the mechanism of data collection. + Req: true + Type: string Term: - Origin: caDSR - Code: '14616431' - Value: Imaging Technique Spectrally Selected Suppression Type + Original Source: CDS + Code: '14670301' + Value: Image Study Spatial Acquisition Type Code Version: '1.00' - MRImageReconstructionProtocolElement_complexImageComponentCode: - Desc: A coded value specifying the channel of the quadrature detected data, or the combination derived from those channels, used to reconstruct the image + performed_imaging_study_cardiacSynchronizationTechniqueCode: + Desc: The means used to coordinate the collection or reconstruction of data with the cardiac cycle. Enum: - - REAL - - IMAGINARY - - PHASE - - MAGNITUDE + - REALTIME + - PROSPECTIVE + - RETROSPECTIVE + - PACED + - NONE Term: - Origin: caDSR - Code: '14616432' - Value: Imaging Technique Complex Image Component Type + Original Source: CDS + Code: '14617521' + Value: Image Study Cardiac Synchronization Technique Code Name Version: '1.00' - PETImagingAcquisitionProtocolElement_gantryDetectorTilt: - Desc: Nominal angle of tilt in degrees of the scanning gantry. The units are of plane angle , e.g. degrees. Zero degrees means the gantry is not tilted, negative degrees are when the top of the gantry is tilted away from where the table enters the gantry. + performed_imaging_study_dataCollectionDiameter: + Desc: The diameter of the region over which information is acquired. + Req: true Type: string Term: - Origin: caDSR - Code: '2656117' - Value: Image Gantry Detector Tilt 16 Character Number + Original Source: CDS + Code: '14612665' + Value: Image Acquisition Data Collection Location Diameter Number Version: '1.00' - Radiopharmaceutical_radionuclideCode: - Desc: A coded value that specifies the radioactive isotope in the radiophamaceutical. - Type: string + performed_imaging_study_respiratoryMotionTechniqueCode: + Desc: The means to be used to coordinate the collection or reconstruction of data with breathing. + Req: true + Enum: + - BREATH-HOLD + - REALTIME + - GATING + - TRACKING + - RETROSPECTIVE + - CORRECTION + - NONE Term: - Origin: caDSR - Code: '14612653' - Value: Imaging Technique Radionuclide Code Text + Original Source: CDS + Code: '14617522' + Value: Image Study Respiratory Motion Technique Code Name Version: '1.00' - acquisition_method_type: - Desc: Records the method of acquisition or source for the specimen under consideration - Type: string + performed_imaging_study_bodyPositionCode: + Desc: A coded value specifying the 3-dimensional spatial orientation of a subject during this imaging acquisition protocol element. + Enum: + - Supine + - Trendelenburg + - Standing Term: - Origin: caDSR - Original Source: MCL/HTAN - Code: '6626651' - Value: Biospecimen Acquisition Method Type - Version: '2.00' - tumor_tissue_type: - Desc: Text that describes the kind of disease present in the tumor specimen as related to a specific timepoint (add rows to select multiple values along with timepoints) + Original Source: CDS + Code: '14617523' + Value: Image Study Body Position Name + Version: '1.00' + performed_imaging_study_algorithmCode: + Desc: A coded value specifying the algorithm to use when reconstructing the image from the data acquired during the acquisition process + Req: true Type: string Term: - Origin: caDSR - Original Source: HTAN - Code: '3288124' - Value: Tumor Tissue Disease Description Type + Code: '14617557' + Value: Imaging Reconstruction Protocol Algorithm Code Text Version: '1.00' - tissue_fixative: - Desc: A compound that preserves tissues and cells for microscopic study. + performed_imaging_study_reconstructionFieldOfViewHeight: + Desc: The vertical dimension of the rectangular region from which data is used in creating the reconstruction of the image. Req: true - Enum: - - 95% Ethanol - - Acetone - - Alcohol - - Carbodiimide - - Carnoy's Solution - - CryoStor - - Diimidoester - - Dimethylacetamide - - Formalin - - Glutaraldehyde - - Methacarn - - Not applicable - - Not recorded - - NP40 Lysis Buffer - - OCT media - - Other - - Para-benzoquinone - - PAXgene Tissue - - Poloxamer - - RNAlater - - Saline - - TCL Lysis Buffer - - Unknown + Type: string Term: - Origin: caDSR - Original Source: NCI Standard - Code: '65078' - Value: Specimen Fixative Type - Version: '4.00' - embedding_medium: - Desc: A material that infiltrates and supports a specimen and preserves its shape and structure for sectioning and microscopy. + Code: '14612672' + Value: Imaging Reconstruction Protocol Field of View Height Number + Version: '1.00' + performed_imaging_study_reconstructionFieldOfViewWidth: + Desc: The horizontal dimension of the rectangular region from which data is used in creating the reconstruction of the image. Req: true - Enum: - - Paraffin wax - - Carbowax - - Methacrylate - - Epoxy Resin (Araldite) - - Agar embedding - - Celloidin media - - Gelatin - - Other - - None - - Unknown + Type: string Term: - Origin: caDSR - Original Source: HTAN - Code: '8037927' - Value: Biospecimen Collection Medium Type + Code: '14612674' + Value: Imaging Reconstruction Protocol Field of View Width Number Version: '1.00' - staining_method: - Desc: Any of the various methods that use a dye, reagent, or other material for producing coloration in tissues or microorganisms for microscopic examination. + performed_imaging_study_reconstructionDiameter: + Desc: The diameter of the region from which data is used in creating the reconstruction of the image. Req: true - Enum: - - CODEX - - GeoMX-DSP - - H&E - - IHC - - IMC - - MIBI - - mIHC - - MxIF - - SABER - - t-CyCIF + Type: string Term: - Origin: caDSR - Original Source: HTAN - Code: '7789196' - Value: Imaging Assay Technology Type + Code: '2182085' + Value: Reconstruction Diameter in Millimeter(s) Version: '1.00' - objective: - Desc: "An objective is an optical element that gathers light from an object being observed and focuses the light rays from it to produce a real image of the object." + performed_imaging_study_sliceThickness: + Desc: The cross plane dimension of the reconstructed image. + Req: true Type: string Term: - Origin: caDSR - Code: '7788935' - Value: Microscope Device Objective Lens Text - Version: '1.00' - nominal_magnification: - Desc: The magnification of the lens as specified by the manufacturer - i.e. '60' is a 60X lens. floating point value > 1(no units) + Code: '3113185' + Value: Image Plane Slice Thickness Float or Fixed-point Millimeter Number + Version: '2.00' + performed_imaging_study_reconstructionInterval: + Desc: The cross plane distance between the centers of adjacent, parallel reconstructed images. + Req: true Type: string Term: - Origin: caDSR - Original Source: HTAN - Code: '7788940' - Value: Microscope Device Nominal Magnification Float Value + Code: '14612682' + Value: Imaging Reconstruction Protocol Reconstruction Interval Millimeter Number Version: '1.00' - immersion: - Desc: Immersion medium + # NonDICOMCTimages : + NonDICOMCTimages_id: + Desc: NonDICOMCTimages identifier + Type: string + Req: true + Key: true + CTAquisitionProtocolElement_singleCollimationWidth: + Desc: The width of a single row of acquired data. The units are of linear distance, e.g. mm. Type: string Term: - Origin: caDSR - Original Source: HTAN - Code: '8058286' - Value: Microscope Device Immersion Medium Type + Code: '2903347' + Value: Image Single Collimation Width 8 Byte Millimeter Number Version: '1.00' - lens_numerical_aperture: - Desc: The numerical aperture of the lens. Floating point value > 0. + CTAquisitionProtocolElement_totalCollimationWidth: + Desc: The width of the total collimation over the area of active x-ray detection. The units are of linear distance, e.g. mm. + Req: true Type: string Term: - Origin: caDSR - Original Source: HTAN - Code: '7788942' - Value: Microscope Device Lens Numerical Aperture Float Value + Code: '2903328' + Value: Image Total Collimation Width 8 Byte Millimeter Number Version: '1.00' - working_distance: - Desc: The working distance of the lens, expressed as a floating point number. Floating point > 0. Size needs to be specified in microns (um) + CTAquisitionProtocolElement_gantryDetectorTilt: + Desc: Nominal angle of tilt in degrees of the scanning gantry. The units are of plane angle , e.g. degrees. Zero degrees means the gantry is not tilted, negative degrees are when the top of the gantry is tilted away from where the table enters the gantry. + Req: true Type: string Term: - Origin: caDSR - Original Source: HTAN - Code: '7788943' - Value: Microscope Device Working Distance Float Value + Original Source: caDSR + Code: '2656117' + Value: Image Gantry Detector Tilt 16 Character Number Version: '1.00' - imaging_assay_type: - Desc: Type of imaging assay + CTAquisitionProtocolElement_spiralPitchFactor: + Desc: Ratio of the distance that the table moves during a complete revolution of the source around the gantry orbit, to the width of the total collimation over the area of active x-ray detection. The units are of unity. Req: true Type: string Term: - Origin: caDSR - Original Source: HTAN - Code: '7789196' - Value: Imaging Assay Technology Type + Code: '2414556' + Value: Computed Tomography Pitch Factor Number Version: '1.00' - pyramid: - Desc: The data file contains an image pyramid + CTAquisitionProtocolElement_ctdiVol: + Desc: The average dose over the total volume scanned for the selected CT conditions of operation (calculated according to IEC 60601-2-44, Ed.2.1 (Clause 29.1.103.4)). The units are energy dose, e.g. mGy. + Req: true Type: string Term: - Origin: caDSR - Original Source: HTAN - Code: '7788945' - Value: Image Processing Pyramid Representation True False Indicator + Code: '3882991' + Value: Computed Tomography Dose Index Volume Quantity 8 Byte Number Version: '1.00' - physical_size_x: - Desc: Physical size (X-dimension) of a pixel. Floating point value > 0. Size needs to be specified in microns (um) + CTAquisitionProtocolElement_ctdiPhantomTypeCode: + Desc: The type of phantom to use for CTDI measurement according to IEC 60601-2-44 + Req: true Type: string Term: - Origin: caDSR - Original Source: HTAN - Code: '7786584' - Value: Image Processing Pyramid Representation True False Indicator + Code: '14612683' + Value: Imaging Technique CTDI Phantom Type Sequence of Items Text Version: '1.00' - physical_size_y: - Desc: Physical size (Y-dimension) of a pixel. Floating point value > 0. Size needs to be specified in microns (um) + CTAquisitionProtocolElement_kVp: + Desc: Peak kilovoltage output of the x-ray generator. The units are of electrical potential. + Req: true Type: string Term: - Origin: caDSR - Original Source: HTAN - Code: '7786585' - Value: Pixel Y-Dimension Float Value + Code: '2904496' + Value: Image Kilovolt Peak Float 16 Number Version: '1.00' - physical_size_z: - Desc: Physical size (Z-dimension) of a pixel. Floating point value > 0. Size needs to be specified in microns (um) - Type: string + CTAquisitionProtocolElement_exposureModulationType_Code: + Desc: The manner in which tube current is varied in order to limit the dose. + Enum: + - NONE + - ANGULAR + - LONGITUDINAL + - ECG-BASED + - ORGAN-BASED Term: - Origin: caDSR - Original Source: HTAN - Code: '7786586' - Value: Pixel Z-Dimension Float Value + Code: '14617524' + Value: Imaging Technique Exposure Modulation Type Version: '1.00' - size_c: - Desc: Number of channels. Integer >= 1 + CTImageReconstructionProtocolElement_convolutionKernel: + Desc: A label describing the mathematical operations used to reconstruct images from the acquired data. The values for this attribute are vendor specific and not coded. Type: string Term: - Origin: caDSR - Code: '7794859' - Value: OME TIFF Channel Count + Code: '2656119' + Value: Image Convolution Kernel 16 Character Text Version: '1.00' - size_t: - Desc: Number of time points. Integer >= 1 + CTImageReconstructionProtocolElement_convolutionKernelGroupCode: + Desc: A coded value specifying the family of mathematical operations to use to reconstruct images from the acquired data Type: string Term: - Origin: caDSR - Code: '7794860' - Value: OME TIFF Timepoint Count + Code: '14617525' + Value: Imaging Technique Convolution Kernel Group Name Version: '1.00' - size_x: - Desc: 'Size of image: X dimension (in pixels). Integer >= 1' + # NonDICOMMRimages: + NonDICOMMRimages_id: + Desc: NonDICOMMRimages identifier Type: string + Req: true + Key: true + MRImageAcquisitionProtocolElement_echoPulseSequenceCategoryCode: + Desc: A coded value specifying an echo category of pulse sequences. + Enum: + - SPIN + - GRADIENT + - BOTH Term: - Origin: caDSR - Code: '7788567' - Value: OME TIFF X-Dimension Pixel Measurement + Original Source: CDS + Code: '14645641' + Value: Image Acquisition Spin-Echo Pulse Sequence Code Category Version: '1.00' - size_y: - Desc: 'Size of image: Y dimension (in pixels). Integer >= 1' + MRImageAcquisitionProtocolElement_diffusionBValue: + Desc: The factor by which the acquisition is sensitized to the Brownian motion of water molecules. The units are of time/area, e.g. s/mm2 Type: string Term: - Origin: caDSR - Code: '7788568' - Value: OME TIFF Y-Dimension Pixel Measurement + Code: '14607706' + Value: Imaging Technique MR Diffusion B Value Number Version: '1.00' - size_z: - Desc: 'Size of image: Z dimension (in pixels). Integer >= 1' - Type: string + MRImageAcquisitionProtocolElement_diffusionDirectionalityCode: + Desc: A coded value specifying whether diffusion conditions for the frame are directional, or isotropic with respect to direction + Enum: + - DIRECTIONAL + - BMATRIX + - ISOTROPIC + - NONE Term: - Origin: caDSR - Code: '7788569' - Value: OME TIFF Z-Dimension Pixel Measurement + Code: '14616426' + Value: Imaging Technique Diffusion Directionality Type Version: '1.00' - channel_metadata_filename: - Desc: File name of uploaded companion CSV file containing channel-level metadata details - Req: true + MRImageAcquisitionProtocolElement_magneticFieldStrength: + Desc: "A vector quantity indicating the ability of a magnetic field to exert a force on moving electric charges. [The American Heritage\xAE Science Dictionary]. The units are of magnetic flux density, e.g. tesla." Type: string Term: - Origin: caDSR - Original Source: HTAN - Code: '7787678' - Value: Channel Analysis Metadata Electronic File Name Text + Code: '14607707' + Value: Imaging Technique Magnetic Field Strength Number Version: '1.00' - channel_metadata_file_url_in_cds: - Desc: '' - Type: string + MRImageAcquisitionProtocolElement_resonantNucleusCode: + Desc: A coded value specifying the atomic nucleus that is the target of the acquisition + Enum: + - 1H + - 3HE + - 7LI + - 13C + - 19F + - 23NA + - 31P + - 129XE Term: - Origin: caDSR - Original Source: CDS - Code: '11556141' - Value: Electronic File Pathname Text + Code: '14616427' + Value: Image Acquisition Resonant Nucleus Type Version: '1.00' - channel_id: - Desc: The unique channel identifier for each channel in this image must match the corresponding field in the OME-TIFF header - Req: true - Type: string + MRImageAcquisitionProtocolElement_acquisitionContrastCode: + Desc: A coded value specifying the inherent (as opposed to exogenous) contrast in the acquisition. + Enum: + - DIFFUSION + - FLOW_ENCODED_Flow Encoded contrast + - FLUID_ATTENUATED_Fluid Attenuated T2 weighted contrast + - PERFUSION_Perfusion weighted contrast + - PROTON_DENSITY_Proton Density weighted contrast + - STIR_Short Tau Inversion Recovery + - TAGGING_Superposition of thin saturation bands onto image + - T1_T1 weighted contrast + - T2_T2 weighted contrast + - T2_STAR_T2* weighted contrast + - TOF_Time Of Flight weighted contrast Term: - Origin: caDSR - Code: '14765171' - Value: OME Tagged Image File Format Channel Identifier + Code: '14616428' + Value: Image Acquisition Contrast Type Version: '1.00' - channel_name: - Desc: Channel label for each channel in this image must match the corresponding field in the OME-TIFF header - Req: true + MRImageAcquisitionProtocolElement_inversionRecoveryIndicator: + Desc: Specifies whether an inversion recovery preparatory sequence is used in the acquisition. Type: string Term: - Origin: caDSR - Code: '14765172' - Value: OME Tagged Image File Format Channel Name + Code: '14607722' + Value: Image Acquisition Inversion Recovery Indicator Version: '1.00' - cycle_number: - Desc: 'the cycle # in which the co-listed reagent(s) was(were) used' + MRImageAcquisitionProtocolElement_pulseSequenceName: + Desc: Name of the pulse sequence that is used for the acquisition. This is usually a vendor-specific name. Type: string Term: - Origin: caDSR - Original Source: CDS - Code: '14765176' - Value: Multiplex Imaging Reagent Cycle Number Integer + Code: '14608594' + Value: Image Acquisition Pulse Sequence Name Text Version: '1.00' - sub_cycle_number: - Desc: 'sub-cycle #' + MRImageAcquisitionProtocolElement_multipleSpinEchoIndicator: + Desc: Specifies whether different lines in k-space are collected for a single frame. Type: string Term: - Origin: caDSR - Original Source: CDS - Code: '14765180' - Value: Multiplex Imaging Reagent Sub-Cycle Number Integer + Code: '14608595' + Value: Imaging Technique Multiple Spin Echo Indicator Version: '1.00' - target_name: - Desc: short descriptive name (abbreviation) for this target (antigen) + MRImageAcquisitionProtocolElement_phaseContrastIndicator: + Desc: Specifies whether this is a pulse sequence in which the flowing spins are velocity encoded in phase. Type: string Term: - Origin: caDSR - Original Source: CDS - Code: "14765180" - Value: "Multiplex Imaging Reagent Sub-Cycle Number Integer" + Code: '14608601' + Value: Image Phase Contrast Indicator Version: '1.00' - antibody_name: - Desc: short descriptive name for this antibody + MRImageAcquisitionProtocolElement_timeOfFlightContrastIndicator: + Desc: Specifies whether contrast is created by the inflow of blood in the saturated plane. Type: string Term: - Origin: caDSR - Original Source: CDS - Code: '14765184' - Value: Tissue Slide IHC Antibody Used Type + Code: '14608649' + Value: Imaging Technique Time of Flight Contrast Indicator Version: '1.00' - rrid_identifier: - Desc: Research Resource Identifier + MRImageAcquisitionProtocolElement_arterialSpinLabelingContrastCode: + Desc: A coded value specifying how arterial water is used as a diffusable tracer. Type: string Term: - Origin: caDSR - Original Source: CDS - Code: '14767247' - Value: Multiplex Imaging Research Resource Identifier Text + Code: '14616429' + Value: Imaging Technique Arterial Spin Labeling Contrast Name Version: '1.00' - fluorophore: - Desc: Fluorescent dye label - Type: string + MRImageAcquisitionProtocolElement_steadyStatePulseSequenceCode: + Desc: A coded value specifying how residual transverse magnetization is maintained during the acquisition. + Enum: + - FREE PRECESSION + - TRANSVERSE + - TIME REVERSED + - LONGITUDINAL + - NONE Term: - Origin: caDSR - Original Source: CDS - Code: '14767255' - Value: Multiplex Imaging Fluorescent Dye Text + Code: '14616430' + Value: Image Acquisition Steady State Pulse Sequence Type Version: '1.00' - clone: - Desc: Unique clone identifier + MRImageAcquisitionProtocolElement_echoPlanarPulseSequenceIndicator: + Desc: Specifies whether multiple echos of different phase steps are acquired using rephasing gradients instead of repeated 180-degree pulses. Type: string Term: - Origin: caDSR - Original Source: CDS - Code: '14767258' - Value: Multiplex Imaging Clone Unique Identifier + Code: '14612651' + Value: Image Acquisition Echo Planar Pulse Sequence Indicator Version: '1.00' - lot: - Desc: lot number from vendor + MRImageAcquisitionProtocolElement_saturationRecoveryIndicator: + Desc: Specifies whether a saturation recovery pulse sequence is used Type: string Term: - Origin: caDSR - Original Source: CDS - Code: '14769695' - Value: Multiplex Imaging Vendor Lot Number Text + Code: '14612652' + Value: Imaging Technique Saturation Recovery Indicator Version: '1.00' - catalog_number: - Desc: catalog number from vendor - Type: string + MRImageAcquisitionProtocolElement_spectrallySelectedSuppressionCode: + Desc: A coded value specifying the type of substance-specific signal suppression is used. + Enum: + - FAT + - WATER + - FAT AND WATER + - SILICON GEL + - NONE Term: - Origin: caDSR - Original Source: CDS - Code: '14767261' - Value: Multiplex Imaging Vendor Catalog Number Text + Code: '14616431' + Value: Imaging Technique Spectrally Selected Suppression Type Version: '1.00' - excitation_wavelength: - Desc: center/peak of the excitation spectrum (nm) - Type: string + MRImageReconstructionProtocolElement_complexImageComponentCode: + Desc: A coded value specifying the channel of the quadrature detected data, or the combination derived from those channels, used to reconstruct the image + Enum: + - REAL + - IMAGINARY + - PHASE + - MAGNITUDE Term: - Origin: caDSR - Original Source: CDS - Code: '14765187' - Value: Multiplex Imaging Excitation Wavelength Number + Code: '14616432' + Value: Imaging Technique Complex Image Component Type Version: '1.00' - emission_wavelength: - Desc: center/peak of the emission spectrum (nm) + # NonDICOMPETimages: + NonDICOMPETimages_id: + Desc: NonDICOMPETimages identifier + Type: string + Req: true + Key: true + PETImagingAcquisitionProtocolElement_gantryDetectorTilt: + Desc: Nominal angle of tilt in degrees of the scanning gantry. The units are of plane angle , e.g. degrees. Zero degrees means the gantry is not tilted, negative degrees are when the top of the gantry is tilted away from where the table enters the gantry. Type: string Term: - Origin: caDSR - Original Source: CDS - Code: '14767264' - Value: Multiplex Imaging Emission Wavelength Number + Code: '2656117' + Value: Image Gantry Detector Tilt 16 Character Number Version: '1.00' - excitation_bandwidth: - Desc: nominal width of excitation spectrum (nm) + Radiopharmaceutical_radionuclideCode: + Desc: A coded value that specifies the radioactive isotope in the radiophamaceutical. Type: string Term: - Origin: caDSR - Original Source: CDS - Code: '14765190' - Value: Multiplex Imaging Excitation Bandwidth Number + Code: '14612653' + Value: Imaging Technique Radionuclide Code Text Version: '1.00' - emission_bandwidth: - Desc: nominal width of emission spectrum (nm) + # NonDICOMpathologyImages: + NonDICOMpathologyImages_id: + Desc: NonDICOMpathologyImages identifier + Type: string + Req: true + Key: true + acquisition_method_type: + Desc: Records the method of acquisition or source for the specimen under consideration Type: string Term: - Origin: caDSR - Original Source: CDS - Code: '14765193' - Value: Multiplex Imaging Emission Bandwidth Number - Version: '1.00' - metal_isotope_element_abbreviation: - Desc: Element abbreviation - Type: string + Original Source: MCL/HTAN + Code: '6626651' + Value: Biospecimen Acquisition Method Type + Version: '2.00' + tissue_fixative: + Desc: A compound that preserves tissues and cells for microscopic study. + Req: true + Enum: + - 95% Ethanol + - Acetone + - Alcohol + - Carbodiimide + - Carnoy's Solution + - CryoStor + - Diimidoester + - Dimethylacetamide + - Formalin + - Glutaraldehyde + - Methacarn + - Not applicable + - Not recorded + - NP40 Lysis Buffer + - OCT media + - Other + - Para-benzoquinone + - PAXgene Tissue + - Poloxamer + - RNAlater + - Saline + - TCL Lysis Buffer + - Unknown Term: - Origin: caDSR - Original Source: CDS - Code: '14765198' - Value: Multiplex Imaging Isotope Abbreviation Name + Original Source: NCI Standard + Code: '65078' + Value: Specimen Fixative Type + Version: '4.00' + embedding_medium: + Desc: A material that infiltrates and supports a specimen and preserves its shape and structure for sectioning and microscopy. + Req: true + Enum: + - Paraffin wax + - Carbowax + - Methacrylate + - Epoxy Resin (Araldite) + - Agar embedding + - Celloidin media + - Gelatin + - Other + - None + - Unknown + Term: + - Origin: caDSR + Original Source: HTAN + Code: '8037927' + Value: Biospecimen Collection Medium Type Version: '1.00' - metal_isotope_element_mass: - Desc: Element mass number - Type: string + staining_method: + Desc: Any of the various methods that use a dye, reagent, or other material for producing coloration in tissues or microorganisms for microscopic examination. + Req: true + Enum: + - CODEX + - GeoMX-DSP + - H&E + - IHC + - IMC + - MIBI + - mIHC + - MxIF + - SABER + - t-CyCIF Term: - Origin: caDSR - Original Source: CDS - Code: '14765201' - Value: Multiplex Imaging Isotope Element Number Identifier + Original Source: HTAN + Code: '7789196' + Value: Imaging Assay Technology Type Version: '1.00' - oligo_barcode_upper_strand: - Desc: DNA barcode used for labeling + objective: + Desc: "An_objective_is an optical element that gathers light from an object being observed and_focuses_the_light rays_from it to produce a_real image_of the object." Type: string Term: - Origin: caDSR - Original Source: CDS - Code: '14765205' - Value: Multiplex Imaging Oligonucleotide Barcode Upper Strand Text + Code: '7788935' + Value: Microscope Device Objective Lens Text Version: '1.00' - oligo_barcode_lower_strand: - Desc: DNA barcode used for labeling + nominal_magnification: + Desc: The magnification of the lens as specified by the manufacturer - i.e. '60' is a 60X lens. floating point value > 1(no units) Type: string Term: - Origin: caDSR - Original Source: CDS - Code: '14765208' - Value: Multiplex Imaging Oligonucleotide Barcode Lower Strand Text + Original Source: HTAN + Code: '7788940' + Value: Microscope Device Nominal Magnification Float Value Version: '1.00' - dilution: - Desc: Final dilution ratio used in experiment + immersion: + Desc: Immersion medium Type: string Term: - Origin: caDSR - Code: '14767270' - Value: Multiplex Imaging Final Dilution Ratio Number + Original Source: HTAN + Code: '8058286' + Value: Microscope Device Immersion Medium Type Version: '1.00' - concentration: - Desc: Final concentration used in experiment + lens_numerical_aperture: + Desc: The numerical aperture of the lens. Floating point value > 0. Type: string Term: - Origin: caDSR - Original Source: CDS - Code: '14768386' - Value: Multiplex Imaging Final Concentration Number + Original Source: HTAN + Code: '7788942' + Value: Microscope Device Lens Numerical Aperture Float Value Version: '1.00' + # file checksum_value: Desc: checksum (hash) for file (using checksum_algorithm) - if you want to use a checksum other than md5 @@ -1116,7 +1153,7 @@ PropDefinitions: file_mapping_level: Desc: Describes if the file belongs to a Participant, a Sample, or a Study Enum: - - Participiant + - Participant - Sample - Study Term: @@ -1277,7 +1314,7 @@ PropDefinitions: Value: Person Sex at Birth Category Version: '1.00' ethnicity: - Desc: OMB Ethinicity designator + Desc: OMB Ethnicity designator Enum: - Hispanic or Latino - Not allowed to collect @@ -2750,851 +2787,806 @@ PropDefinitions: primary_diagnosis: Desc: Primary disease diagnosed for this diagnosis and subject Enum: - - Reactive Connective Tissue + - Head and Neck Squamous Cell Carcinoma + - Astroblastoma, Other, Other CNS Tumor, NOS Or NEC + - Medulloblastoma; Hypercellular Lesion With Marked Atypia + - Ependymoma, NOS, Posterior Fossa Ependymoma, NOS Or NEC + - Neoplasm, Uncertain Whether Benign Or Malignant, Dysembryoplastic Neuroepithelial Tumor, Glioneuronal And Neuronal Tumors + - Neuroma, NOS + - Precursor Cell Lymphoblastic Leukemia, NOS + - Hypercellular Neuroepithelial Tumor With Some Features Of Glioma, Possibly High Grade + - Acute Leukemia, NOS + - Oligoastrocytoma, NOS, Glioneuronal And Neuronal Tumors, Papillary Glioneuronal Tumor + - High-grade serous carcinoma + - Myeloid Leukemia, NOS + - Choriocarcinoma, NOS + - Embryonal Carcinoma, NOS, Embryonal Tumor With Multilayered Rosettes, C19MC Altered, Other CNS Embryonal Tumors + - Giant Cell Tumor Of Bone, NOS + - Adenocarcinoma, Intestinal Type + - Not Specified In Data + - Neoplasm, Uncertain Whether Benign Or Malignant, Choroid Plexus Tumors, Choroid Plexus Papilloma + - Ductal Carcinoma NOS + - Renal Cell Carcinoma, NOS + - B Lymphoblastic Leukemia/Lymphoma With T(1;19)(Q23;P13.3); E2A-PBX1 (TCF3-PBX1) + - Myelodysplastic Syndrome, NOS + - Low Grade Fibromyxoid Sarcoma + - Benign Cystic Nephroma + - Glial Neoplasm + - Papillary Adenocarcinoma, NOS + - Telangiectatic Osteosarcoma + - Ganglioglioma, NOS, Malignant Peripheral Nerve Sheath Tumor, NOS + - Central Neurocytoma + - Giant Cell Tumor Of Soft Parts, NOS + - Giant Cell Tumor Of Bone, Malignant + - Sertoli-Leydig Cell Tumor, Poorly Differentiated + - Glioma, Malignant, Dysembryoplastic Neuroepithelial Tumor, Glioneuronal And Neuronal Tumors + - Acute Megakaryoblastic Leukemia + - Germinoma, CNS Germ Cell Tumors, CNS Non-Germinomatous Germ Cell Tumor + - Dysembryoplastic Neuroepithelial Tumor With Adjacent Cortical Dysplasia, WHO Grade 1 + - Supratentorial Ependymoma, NOS + - Myxoid Liposarcoma - Acute Lymphoblastic Leukemia - - Medulloblastoma, Classic Histologic Type (CNS WHO Grade 4) - - Undifferentiated Small Round Cell Sarcoma - - Embryonal Rhabdomyosarcoma - - Undifferentiated Sarcoma + - Combined Small Cell-Squamous Cell Carcinoma + - High Grade Spindle Cell Sarcoma + - Medulloblastoma, Group 3 Subtype (WHO Grade 4) + - Acute Monocytic Leukemia + - Neoplasm, NOS + - Retinoblastoma, Grade 3 + - Yolk Sac Tumor, NOS, CNS Germ Cell Tumors, CNS Non-Germinomatous Germ Cell Tumor + - Myofibroblastic Tumor, NOS + - Sex Cord-Gonadal Stromal Tumor, Mixed Forms + - Adamantinomatous Craniopharyngioma + - Mesoblastic Nephroma + - Dysembryoplastic Neuroepithelial Tumor, Low-Grade Glioma, Polymorphous Low-Grade Neuroepithelial Tumor Of The Young + - Astrocytoma, NOS, High-Grade Glioma, Infant-Type Hemispheric Glioma + - Rhabdomyosarcoma, NOS + - Mucinous Adenocarcinoma, Endocervical Type + - Neoplasm, Uncertain Whether Benign Or Malignant, Medulloblastoma, Medulloblastoma, Non-WNT/Non-SHH + - Ganglioglioma, NOS, Glioneuronal And Neuronal Tumors - Dermoid Cyst - - Glioma, Malignant, Low-Grade Glioma, Pilocytic Astrocytoma - - Nephroblastoma (Wilms Tumor) - - Metaplastic Carcinoma, NOS - - Hemangioblastoma, CNS WHO Grade 1 - - Rhabdoid Tumor, NOS - - Low Grade Neoplasm. Features Suggestive Of Pilocytic Astrocytoma. - - Lobular Adenocarcinoma - - Low Cumulative Sun Damage Melanoma - - Malignant Neoplasm Of Prostate - - Osteoblastoma - - Choroid Plexus Carcinoma WHO Grade 3 + - Adenocarcinoma Combined With Other Types Of Carcinoma + - Precursor Cell Lymphoblastic Lymphoma, NOS + - Posterior Fossa Ependymoma, CNS WHO Grade 2 + - Pituitary Adenoma, NOS + - Neoplasm, Malignant, CNS Germ Cell Tumors, CNS Non-Germinomatous Germ Cell Tumor + - Sex Cord-Gonadal Stromal Tumor, Incompletely Differentiated + - High Grade Follicular Derived Thyroid Carcinoma + - Desmoplastic Fibroma + - Perineuroma - Diffuse Midline Glioma, H3K27M-Mutant, CNS WHO Grade 4 - - Lipoblastomatosis - - Melanotic Neuroectodermal Tumor - - Ependymoma, NOS, Atypical Meningioma + - Ganglioglioma + - Pancreatobiliary-Type Carcinoma + - Paratesticular Rhabdomyosarcoma With Diffuse Anaplasia + - Hemangioblastoma + - Colorectal Carcinoma + - Acute Myelomonocytic Leukemia + - Diffuse Midline Glioma, H3 K27-Altered + - T-Lymphoblastic Lymphoma + - Lymphangioma, NOS + - Neoplasm, Benign + - Papillary Intralymphatic Angioendothelioma + - Ependymoma, NOS, Supratentorial Ependymoma, ZFTA Fusion-Positive + - Unclassified Sarcoma With Round Cell Morphology + - Glioma + - Medulloblastoma, Classic (Biphasic) Histologic Type, Non-SHH/Non-WNT Molecular Group, CNS WHO Grade 4 + - Soft Tissue Sarcoma + - Xanthogranuloma + - Neoplasm, Malignant, Diffuse Midline Glioma, H3 K27-Altered, High-Grade Glioma + - Bronchio-Alveolar Carcinoma, Mucinous + - Hepatocellular Carcinoma, Fibrolamellar + - Pancreatic Neuroendocrine Tumor, Nonfunctioning + - Myxopapillary Ependymoma + - Chondrosarcoma, NOS + - Favor Ganglioglioma + - Papillary Tumor Of Pineal Region + - Acute Myeloid Leukemia With Mutated NPM1 + - Epithelioid Hemangioendothelioma, NOS + - Neuroblastoma, NOS + - Chondroid Chordoma + - Infiltrating Duct And Lobular Carcinoma + - Mitotically Active Glial/ Glioneuronal Neoplasm + - Neoplasm, Uncertain Whether Benign Or Malignant, Medulloblastoma, Medulloblastoma, NOS Or NEC + - CPNET - Mycosis Fungoides, Langerhans Cell Histiocytosis, NOS - - Embryonal Tumor With Multi-Layered Rosettes - - Synovial Sarcoma, Spindle Cell - - Liposarcoma, NOS - - Chordoma, NOS, Chordoma (Including Poorly Differentiated Chordoma), Other - - Neoplasm, Uncertain Whether Benign Or Malignant, Meningioma, Other - - Neoplasm, Uncertain Whether Benign Or Malignant, Ependymoma, Posterior Fossa Ependymoma, Group PFA - - Schwannian Stroma Poor Peripheral Neuroblastic Tumor, Consistent With Neuroblastoma - - Adult Granulosa Cell Tumor Of Testis - - B-Lymphoblastic Leukemia/Lymphoma, NOS - - Astrocytoma, IDH-Mutant, CNS WHO Grade 4 - - Synovial Sarcoma, NOS - - Acute Myeloid Leukemia, Inv(16)(P13;Q22) - - Perineuroma - - Yolk Sac Tumor - - Paraganglioma, NOS - - Langerhans Cell Histiocytosis + - T-Lymphoblastic Leukemia + - Medulloblastoma, NOS, Medulloblastoma, Non-WNT/Non-SHH + - Clear Cell Meningioma, Meningioma, Other + - Ameloblastic Carcinosarcoma + - Dysembryoplastic Neuroepithelial Tumor, Glioneuronal And Neuronal Tumors + - Meningothelial Meningioma + - Epithelioid Cell Melanoma + - Prostate Cancer + - Paraganglioma, Malignant + - Small Cell Sarcoma + - Cystosarcoma Phyllodes, NOS + - Seminoma, NOS + - Yolk Sac Tumor, NOS + - Intraductal Carcinoma NOS + - Adenocarcinoma, Endocervical Type + - Neurofibroma, NOS + - Astroblastoma, Astroblastoma, MN1-Altered, High-Grade Glioma + - Meningothelial Meningioma, Grade 1 + - Neoplasm, Uncertain Whether Benign Or Malignant, Ependymoma, Supratentorial Ependymoma, NOS Or NEC + - Unknown + - Neoplasm, Uncertain Whether Benign Or Malignant, CNS Sarcoma, Ewing Sarcoma + - Glioma, Malignant, Diffuse Hemispheric Glioma, H3 G34-Mutant, High-Grade Glioma + - Endometrioid Adenocarcinoma, NOS + - Pancreas-Adenocarcinoma Ductal Type + - Giant Cell Glioblastoma, Glioblastoma, IDH-Wildtype, High-Grade Glioma + - Angiomyosarcoma + - Carcinoid Tumor + - Adenosquamous Carcinoma + - Metastatic Neuroblastoma + - Clear Cell Sarcoma Of Kidney + - Infiltrating Duct Mixed With Other Types Of Carcinoma - Neoplasm, Uncertain Whether Benign Or Malignant, Diffuse Midline Glioma, H3 K27-Altered, High-Grade Glioma - - Intraductal Papillary Carcinoma - - Acute Erythroid Leukemia - - Ganglioneuroblastoma - - Meningioma, Atypical, CNS WHO Grade 2 - - Ganglioneuroma, Maturing Type, Favorable Histology - - Adenocarcinoma, NOS - - Glioma, Malignant, Embryonal Tumor With Multilayered Rosettes, C19MC Altered, Other CNS Embryonal Tumors - - Medulloblastoma, SHH-Activated And TP53-Mutant - - Neoplasm, Uncertain Whether Benign Or Malignant - - Oligodendroglioma, Anaplastic, NOS - - Astrocytoma, IDH-Mutant, WHO Grade 2 - - Plexiform Fibrohistiocytic Tumor - - Oligoastrocytoma, NOS, Glioneuronal And Neuronal Tumors, Glioneuronal And Neuronal Tumors, NOS Or NEC - - Fibroma - - Hemangioblastoma, Other - - Diffuse Midline Glioma, H3 K27-Altered - - Multiple Myeloma - - HHV8 Positive Diffuse Large B-Cell Lymphoma - - Neoplasm, Uncertain Whether Benign Or Malignant, Adamantinomatous Craniopharyngioma, Craniopharyngioma - - Solitary Fibrous Tumor, NOS, Other - - Neoplasm, Malignant, Medulloblastoma, Medulloblastoma, Non-WNT/Non-SHH - - Precursor Cell Lymphoblastic Leukemia, NOS - - Neoplasm, Uncertain Whether Benign Or Malignant, ATRT, NOS Or NEC, Atypical Teratoid/Rhabdoid Tumor - - Chronic Myelogenous Leukemia, BCR-ABL Positive - - Ganglioglioma, NOS, Glioneuronal And Neuronal Tumors - - Anaplastic Large Cell Lymphoma, T-Cell And Null-Cell Type - - Mixed Phenotype Acute Leukemia, B/Myeloid, NOS - - Ependymoma (CNS WHO Grade 3) - - Pheochromocytoma, NOS - - Astroblastoma - - Ossifying Fibroma - - Papillary Intralymphatic Angioendothelioma - - Telangiectatic Osteosarcoma - - Choroid Plexus Papilloma, NOS - - Spinal Ependymoma, Histologically Low Grade (CNS WHO Grade 2) - - Embryonal Rhabdomyosarcoma With Anaplastic Features - - Lentiginous Melanocytic Nevus - - Precursor T-Cell Lymphoblastic Leukemia, Acute Myeloid Leukemia, NOS - - Residual Astrocytoma - - Ependymoma, NOS, Posterior Fossa Ependymoma, NOS Or NEC - - Dysembryoplastic Neuroepithelial Tumor, Low-Grade Glioma, Polymorphous Low-Grade Neuroepithelial Tumor Of The Young - - Medulloblastoma, NOS, Medulloblastoma, Group 3 - - Pilocytic Astrocytoma - - Neoplasm, Metastatic - - Adenocarcinoma, Pancreatobiliary Type, Pancreatobiliary-Type Carcinoma - - Angiomyofibroblastoma - - Supratentorial Ependymoma, NOS + - Embryonal Carcinoma, NOS, Ependymoma, Supratentorial Ependymoma, NOS Or NEC + - Neoplasm, Uncertain Whether Benign Or Malignant, CNS Germ Cell Tumors, CNS Germinoma + - Astrocytoma, NOS, Low-Grade Glioma, Pleomorphic Xanthoastrocytoma + - Low Cumulative Sun Damage Melanoma + - Supratentorial Ependymoma + - Ossifying Fibromyxoid Tumor, NOS + - Diffuse Large B-Cell Lymphoma, NOS + - Adenocarcinoma With Neuroendocrine Differentiation + - Atypical Meningioma + - Pineoblastoma + - Chronic Myeloid Leukemia, NOS + - Atypical Choroid Plexus Papilloma + - Ependymoma, NOS, Posterior Fossa Ependymoma, Group PFB - Pleomorphic Xanthoastrocytoma, NOS, High-Grade Glioma - - Primary Cutaneous Follicle Center Lymphoma - - Chondroblastic Osteosarcoma - - Myxopapillary Ependymoma - - Neoplasm, Uncertain Whether Benign Or Malignant, Low-Grade Glioma, Subependymal Giant Cell Astrocytoma - Oxyphilic Adenocarcinoma + - Favor Pilocytic Astrocytoma, CNS WHO Grade 1 + - Poorly Differentiated, Intermediate Mitotic-Karyorrhectic Index + - Clear Cell Meningioma + - Medulloblastoma, Classic Histologic Type, CNS WHO Grade 4 + - Appearances Consistent With Alveolar Soft Part Sarcoma + - Dedifferentiated Liposarcoma + - Neoplasm, Uncertain Whether Benign Or Malignant, Low-Grade Glioma, Oligodendroglioma, IDH-Mutant, And 1p/19q-Codeleted + - Neoplasm, Uncertain Whether Benign Or Malignant, ATRT, NOS Or NEC, Atypical Teratoid/Rhabdoid Tumor + - Tubular Adenocarcinoma + - Rhabdomyosarcoma, Most Likely An Embryonal Carcinoma + - Adenocarcinoma, NOS - Pleuropulmonary Blastoma - - Myoepithelial Carcinoma - - Acute Myeloid Leukemia With T(9;11)(P22;Q23); MLLT3-MLL - - Melanotic Schwannoma, Other - - Dysplasia - - Central Neurocytoma, Low-Grade Glioma, Subependymal Giant Cell Astrocytoma - - Invasive Carcinoma - - Ependymoma, Anaplastic, Supratentorial Ependymoma, NOS Or NEC - - Pilocytic Astrocytoma, Low-Grade Glioma, Low-Grade Glioma, NOS Or NEC - - Astroblastoma, Other, Other CNS Tumor, NOS Or NEC - - Neurocytoma - - Ependymoma WHO Grade 2 - - Desmoplastic Melanoma, NOS - - "Neoplasm, Malignant, CNS Neuroblastoma, FOXR2-Activated, Other CNS Embryonal Tumors" - - Bland Myofibroblastic Proliferation With Associated Florid Lymphoplasmacytic Inflammation - - Carcinoid Tumor Of Uncertain Malignant Potential - - Choroid Plexus Carcinoma, Choroid Plexus Tumors - - Mixed Phenotype Acute Leukemia, T/Myeloid, NOS - - Paraganglioma, Malignant - - Glial Neoplasm - - Neoplasm, Uncertain Whether Benign Or Malignant, Low-Grade Glioma, Low-Grade Glioma, NOS Or NEC - - Soft Tissue Sarcoma + - Basaloid Squamous Cell Carcinoma + - Oligodendroglioma, Anaplastic, NOS + - Pilocytic Astrocytoma, WHO Grade 1 + - Not Applicable + - Abdominal Fibromatosis + - Hamartoma + - Neoplasm, Malignant, Low-Grade Glioma, Pilocytic Astrocytoma + - Choroid Plexus Papilloma, NOS, Choroid Plexus Tumors + - Burkitt Lymphoma, NOS + - Lymphoepithelial Carcinoma + - Bronchiolo-Alveolar Carcinoma, Non-Mucinous + - Kidney Clear Cell Renal Carcinoma + - Pilocytic Astrocytoma, Low-Grade Glioma + - Adenocarcinoma In Situ In Adenomatous Polyp + - Neoplasm, Uncertain Whether Benign Or Malignant + - Small Blue Cell Tumor. Favor Medulloblastoma + - B Lymphoblastic Leukemia/Lymphoma, NOS + - Embryonal Tumor With Multi-Layered Rosettes + - Chronic Eosinophilic Leukemia + - Mixed Glioma + - Basal Cell Adenocarcinoma + - Olfactory Neuroblastoma - Transitional Cell Carcinoma, NOS - - Ganglioglioma - - Glioma, Malignant, Malignant Peripheral Nerve Sheath Tumor, NOS - - Neoplasm, Uncertain Whether Benign Or Malignant, Choroid Plexus Tumors, Choroid Plexus Papilloma - - Acute Myeloid Leukemia With Abnormal Marrow Eosinophils - - Glial Tumor - - Glioma, Malignant, Ganglioglioma, Glioneuronal And Neuronal Tumors + - Clear Cell Sarcoma, NOS + - Embryonal Rhabdomyosarcoma, High-Grade + - Angiocentric Glioma + - Diffuse Midline Glioma, H3 K27 Altered, WHO Grade 4 + - Osteoblastoma, NOS + - Malignant Neoplasm With Rhabdomyoblastic Differentiation, High Grade + - Myxopapillary Ependymoma (CNS WHO Grade II) + - Melanoma In Situ + - Secretory Carcinoma - Pilocytic Astrocytoma, Glioneuronal And Neuronal Tumors, Glioneuronal And Neuronal Tumors, NOS Or NEC - - Dermatofibrosarcoma Protuberans, NOS - - Pancreas-Adenocarcinoma Ductal Type - - Sarcoma - - Gliosarcoma - - Giant Cell Tumor Of Bone, NOS - - Pilocytic Astrocytoma, Low-Grade Glioma - - Embryonal Carcinoma, NOS, Embryonal Tumor With Multilayered Rosettes, C19MC Altered, Other CNS Embryonal Tumors - - "Astroblastoma, Astroblastoma, MN1-Altered, High-Grade Glioma" - - Adenoma, NOS - - Combined Small Cell-Adenocarcinoma - - Combined Small Cell-Large Carcinoma + - Rhabdomyosarcoma, Favor Alveolar Type + - Adenocarcinoma, Metastatic NOS + - Fibrosarcoma, NOS + - Glioblastoma + - Atypical Choroid Plexus Papilloma, Choroid Plexus Tumors + - Ganglioneuroma, High-Grade Glioma, High-Grade Glioma, NOS Or NEC + - Desmoplastic Melanoma, NOS + - Choroid Plexus Carcinoma - Soft Tissue Tumor, Benign - - Colorectal Carcinoma - - Mixed Adenocarcinoma And Squamous Cell Carcinoma, Pancreatobiliary-Type Carcinoma - - Desmoplastic Nodular Medulloblastoma - - Small Cell Sarcoma - - Hemangioendothelioma, Malignant - - Diffuse Glioma, Favor High Grade - - Squamous Cell Carcinoma, Metastatic, NOS - - Invasive Lobular Carcinoma - - Pinealoblastoma - - Endometrioid Carcinoma, NOS - - Medulloblastoma, NOS, Medulloblastoma, Non-WNT/Non-SHH - - Malignant Melanocytic Neoplasm - - Hypercellular Neuroepithelial Tumor With Some Features Of Glioma, Possibly High Grade - - Glioblastoma, IDH Wildtype - - Craniopharyngioma, Adamantinomatous - - Epithelial Tumor, Benign - - Hodgkin Lymphoma, NOS - - Medulloblastoma, Classic Variant, WHO Grade 4 - - Myofibroblastic Tumor, NOS - - Glioma, Malignant, Angiocentric Glioma, Low-Grade Glioma + - Medulloblastoma, NOS + - Glioblastoma, NOS, Medulloblastoma, NOS + - Residual Astrocytoma + - B Lymphoblastic Leukemia/Lymphoma With T(V;11q23); MLL Rearranged + - Extra Adrenal Paraganglioma + - Mucoepidermoid Carcinoma + - Mixed Germ Cell Tumor, CNS Germ Cell Tumors, CNS Non-Germinomatous Germ Cell Tumor + - Choroid Plexus Papilloma, NOS + - Glioma, Malignant, Astrocytoma, IDH-Mutant, Low-Grade Glioma + - B-Lymphoblastic Leukemia/Lymphoma, NOS - Hodgkin Lymphoma, Nodular Sclerosis, NOS - - Meningioma - - Glioma, Malignant, High-Grade Glioma, High-Grade Glioma, NOS Or NEC - - Choroid Plexus Papilloma, NOS, Choroid Plexus Tumors - - High-Grade Serous Carcinoma - - Adenocarcinoma, Metastatic NOS - - Melanoma, NOS - - Myofibroblastic Tumor - - Unknown, To Be Completed Later, Diffuse Midline Glioma, H3 K27-Altered, High-Grade Glioma - - Papillary Thyroid Carcinoma - - Choriocarcinoma Combined With Other Germ Cell Elements - - Acute Myeloid Leukemia With Myelodysplasia-Related Changes - - Pheochromocytoma - - Germ Cell Tumor, Nonseminomatous, CNS Germ Cell Tumors, CNS Non-Germinomatous Germ Cell Tumor - - Astrocytoma, NOS, Low-Grade Glioma, Pilocytic Astrocytoma - - Glomus Tumor, Malignant + - Fibroma + - Craniopharyngioma, NOS, Adamantinomatous Craniopharyngioma + - T-Cell/Histiocyte Rich Large B-Cell Lymphoma + - Astrocytoma, IDH-Mutant, CNS WHO Grade 4 + - Acute Erythroid Leukemia + - Glioma, Histologically Low Grade + - Mucous Adenocarcinoma + - Glioma, Malignant, Ganglioglioma, Glioneuronal And Neuronal Tumors + - Nodular Melanoma + - Synovial Sarcoma, Biphasic + - Neoplasm, Metastatic + - Neoplasm, Uncertain Whether Benign Or Malignant, Diffuse Pediatric-Type High-Grade Glioma, H3-Wildtype And IDH-Wildtype, High-Grade Glioma + - Thymoma, NOS + - Neoplasm, Uncertain Whether Benign Or Malignant, Ependymoma, Posterior Fossa Ependymoma, Group PFA + - Desmoplastic/Nodular Medulloblastoma + - Papillary Glioneuronal Tumor + - Mixed Phenotype Acute Leukemia, T/Myeloid, NOS + - Cholangiocarcinoma + - Astroblastoma, MN1-Altered. Histologically High-Grade + - Sertoli-Leydig Cell Tumor, Poorly Differentiated, With Heterologous Elements + - Glioma, Malignant, High-Grade Glioma, Infant-Type Hemispheric Glioma - Juvenile Myelomonocytic Leukemia, NOS - - Mitotically Active Glial/ Glioneuronal Neoplasm - - Pancreatic Neuroendocrine Tumor, Nonfunctioning - - High Grade Glioma With Necrosis, WHO Grade 4 - - Oligodendroglioma, NOS, Other, Other CNS Tumor, NOS Or NEC - - Atypical Choroid Plexus Papilloma, Choroid Plexus Tumors - - Desmoplastic Nodular Medulloblastoma, Medulloblastoma, Medulloblastoma, Group 4 - - Supratentorial Ependymoma - - Mixed-Phenotype Acute Leukemia, T/Myeloid, Not Otherwise Specified - - Therapy Related Myeloid Neoplasm - - Low Grade Fibromyxoid Sarcoma - - Favor Anaplastic Ependymoma - - Central Neuroblastoma - - Astrocytoma, NOS, High-Grade Glioma, Infant-Type Hemispheric Glioma - - Hepatoblastoma - - Not Applicable - - Solitary Fibrous Tumor, NOS - - Atypical Choroid Plexus Papilloma - - High Grade Neuroepithelial Tumor - - Acute Monocytic Leukemia - - Mesenchymal Chondrosarcoma - - Embryonal Sarcoma - - Neoplasm, Uncertain Whether Benign Or Malignant, Ependymoma, Supratentorial Ependymoma, NOS Or NEC - - Inflammatory Myofibroblastic Tumor With An Associated Odontogenic Keratocyst - - Renal Cell Adenocarcinoma - - Oligodendroglioma, NOS, Low-Grade Glioma, Oligodendroglioma, IDH-Mutant, And 1p/19q-Codeleted - - Myofibroma - - Primary Cutaneous CD30 Positive T-Cell Lymphoproliferative Disorder - - Meningioma, NOS - - Embryonal Rhabdomyosarcoma, NOS, CNS Embryonal Tumor, NOS - - Lactotroph Adenoma - - Malignant Melanoma, NOS, Meningeal Melanocytic Neoplasms (Includes Melanoma), Other - - Pancreatoblastoma - - Synovial Sarcoma - - Glioma, Malignant, Dysembryoplastic Neuroepithelial Tumor, Glioneuronal And Neuronal Tumors - - Residual Low Grade Neuroendocrine Tumor (Typical Carcinoid) - - Lobular Carcinoma, NOS - - Unknown, To Be Completed Later, Glioneuronal And Neuronal Tumors, Papillary Glioneuronal Tumor - - Germinoma - - Langerhans Cell Histiocytosis, Disseminated - - Epithelial-Myoepithelial Carcinoma - - Ependymoma (WHO Grade 2) - - "Medulloblastoma, NOS, Medulloblastoma, SHH-Activated And TP53-Mutant" - - Neurofibroma, NOS, Other, Solitary Fibrous Tumor - - Adenoma - - Clear Cell Sarcoma, NOS - - Medulloblastoma, NOS, Medulloblastoma, NOS Or NEC - - Epithelioid Hemangioendothelioma, NOS - - Follicular Adenocarcinoma, Well Differentiated, Neuroblastoma, NOS - - Ependymoma, NOS, Choroid Plexus Tumors, Choroid Plexus Papilloma - - Hemangioblastoma - - Rhabdomyosarcoma, Most Likely An Embryonal Carcinoma - - Clear Cell Sarcoma Of Kidney - - Glioneuronal Tumor With Focal Increased Atypia - - Metastatic Neuroblastoma - - Classic Medulloblastoma, CNS WHO Grade 4 - - Adrenal Cortical Tumor, NOS - - Alveolar Rhabdomyosarcoma - - Schwannoma, NOS, Low-Grade Glioma, Low-Grade Glioma, NOS Or NEC - - Bronchiolo-Alveolar Carcinoma, Non-Mucinous - - Glioma, Malignant, Astrocytoma, IDH-Mutant, High-Grade Glioma - - Glioma, Malignant, High-Grade Glioma, Pleomorphic Xanthoastrocytoma - - Infiltrating Lobular Carcinoma, NOS - - Leiomyoma, NOS - - Malignant Peripheral Nerve Sheath Tumor - - Adenocarcinoma Combined With Other Types Of Carcinoma - - Papillary Glioneuronal Tumor - - Spindle Cell Melanoma, NOS - - Oligodendroglioma - - Papillary Glioneuronal Tumor, WHO Grade 1 - - Spindle Cell Rhabdomyosaroma - - Neuroendocrine Tumor, NOS - - Papillary Lesion With Atypical/High Grade Features - - Glioma, Malignant, Low-Grade Glioma, Polymorphous Low-Grade Neuroepithelial Tumor Of The Young - - Ependymoma, NOS, Posterior Fossa Ependymoma, Group PFB - - Glioma, Histologically Low Grade - - Atypical Lymphoid Infiltrate - - Mixed Germ Cell Tumor, CNS Germ Cell Tumors, CNS Non-Germinomatous Germ Cell Tumor - - Neuroendocrine Carcinoma, NOS - - Synovial Sarcoma, Biphasic - - Neuroblastoma - - Small Blue Cell Tumor. Favor Medulloblastoma - - Not Specified In Data - - Large Cell Medulloblastoma, Embryonal Tumor With Multilayered Rosettes, NOS, Other CNS Embryonal Tumors - - Choroid Plexus Carcinoma - - Adrenal Cortical Carcinoma - - T-Cell/Histiocyte Rich Large B-Cell Lymphoma - - Acute Myeloid Leukemia, Minimal Differentiation - - Gliomatosis Cerebri - - Medulloblastoma, Classic Morphology, CNS WHO Grade 4, NON-WNT/NON-SHH, Group 4 Subtype By Methylation - - Ewing Sarcoma - - Adenocarcinoma, Pancreatobiliary Type - - Diffuse Large B-Cell Lymphoma, NOS - - Chronic Myelogenous Leukemia, BCR/ABL Positive - - Adenocarcinoma In Situ, NOS - - Epithelioid Sarcoma, NOS - - Papillary Microcarcinoma - - Medulloblastoma - - Hepatocellular Carcinoma, NOS - - Renal Cell Carcinoma - - Germinoma, CNS Germ Cell Tumors, CNS Non-Germinomatous Germ Cell Tumor - - Acute Myeloid Leukemia With Mutated CEBPA - - Invasive Ductal Carcinoma - - Myxoid Liposarcoma - - Papillary Carcinoma - - Glioblastoma, NOS, Medulloblastoma, NOS - - Rhabdomyosarcoma, Favor Alveolar Type - - Neoplasm, Uncertain Whether Benign Or Malignant, ATRT-SHH, Atypical Teratoid/Rhabdoid Tumor - - Pleomorphic Sarcoma - - Poorly-Differentiated Neuroblastoma - - Ganglioneuroma, High-Grade Glioma, High-Grade Glioma, NOS Or NEC - - Medullary Carcinoma, NOS - - Atypical Teratoid-Rhabdoid Tumor, WHO Grade 4 - - Low Grade Glial/ Glioneuronal Tumor - - Medulloblastoma, Nodular/Desmoplastic With Anaplastic/Large Cell Features, Non-WNT/Non-SHH; WHO Grade 4 - - High Grade Follicular Derived Thyroid Carcinoma - - Ossifying Fibromyxoid Tumor, NOS - - Astrocytoma, NOS - - CNS Primative Neuroectodermal Tumor (PNET) - - B Lymphoblastic Leukemia/Lymphoma With Hyperdiploidy - - Medulloblastoma By Morphology, NON-WNT By Immunohistochemistry - - Acute Monoblastic And Monocytic Leukemia - - Hemangioma, NOS - - Meningioma, NOS, Other - - Neoplasm, Malignant, Astrocytoma, IDH-Mutant, Low-Grade Glioma - - Mucoepidermoid Carcinoma - - Atypical Meningioma - - Yolk Sac Tumor, NOS - - Aggressive Fibromatosis - - Malignant Tumor, Spindle Cell Type, CNS Sarcoma, CNS Sarcoma, NOS Or NEC - - Langerhans Cell Histiocytosis, NOS - - Acute Myelomonocytic Leukemia - - Pleomorphic Xanthoastrocytoma, NOS - - Pleomorphic Xanthoastrocytoma, NOS, Low-Grade Glioma - - Plasmacytoma, Extramedullary - - Primary Mediastinal (Thymic) Large B-Cell Lymphoma - - Neoplasm, Malignant, ATRT-SHH, Atypical Teratoid/Rhabdoid Tumor - - Teratoma, NOS - - Astrocytoma, NOS, High-Grade Glioma, High-Grade Glioma, NOS Or NEC - - Astrocytoma, NOS, Angiocentric Glioma, Low-Grade Glioma - - Sertoli-Leydig Cell Tumor, Poorly Differentiated, With Heterologous Elements - - Diffuse Midline Glioma, H3 K27M-Mutant - - Dedifferentiated Liposarcoma - - Benign Cystic Nephroma - - Medulloblastoma; Hypercellular Lesion With Marked Atypia - - Pilocytic Astrocytoma, WHO Grade 1 - - Teratoma, Malignant, NOS - - Carcinoid Tumor - - Craniopharyngioma - - Mesothelioma, Biphasic, Malignant, B Lymphoblastic Leukemia/Lymphoma, NOS - - Neoplasm, Uncertain Whether Benign Or Malignant, Low-Grade Glioma, Oligodendroglioma, IDH-Mutant, And 1p/19q-Codeleted - - 'B Lymphoblastic Leukemia/Lymphoma With Hypodiploidy' - - Glioblastoma - - Leydig Cell Tumor, NOS - - Mixed Type Rhabdomyosarcoma - - Glioma, Malignant, Other, Other CNS Tumor, NOS Or NEC - - Spinal Ependymoma, WHO Grade 2 - - Spindle Cell Carcinoma, NOS - - Neoplasm, Malignant, Low-Grade Glioma, Pilocytic Astrocytoma - - Mast Cell Leukaemia - - Neurofibroma - - Mucinous Adenocarcinoma, Endocervical Type - - Subependymoma, Ependymoma, Supratentorial Ependymoma, NOS Or NEC - - High Grade Malignant Epithelioid Neoplasm - - Dysembryoplastic Neuroepithelial Tumor, Glioneuronal And Neuronal Tumors - - Neoplasm, Malignant, CNS Germ Cell Tumors, CNS Non-Germinomatous Germ Cell Tumor - - Differentiating Neuroblastoma - - Serous Cystadenocarcinoma NOS - - Medullary Carcinoma - - Blue Nevus, Malignant - - Giant Cell Glioblastoma - - Oligodendroglioma, NOS - - Retinoblastoma, NOS - - Intraductal Papillary Mucinous Neoplasm With An Associated Invasive Carcinoma - - Vascular Lesion, Consistent With Hemangioma - - Malignant Tumor, Small Cell Type - - Meningioma, Malignant - - Carcinoma, Diffuse Type - - Myxopapillary Ependymoma, Anaplastic - - Desmoplastic Infantile Astrocytoma - - Giant Cell Glioblastoma, Glioblastoma, IDH-Wildtype, High-Grade Glioma + - Embryonal Neoplasm With INI-1 Loss By Immunohistochemistry - Myeloid Leukemia With Myelodysplasia-Related Changes - - Ganglioglioma, NOS - - B Lymphoblastic Leukemia/Lymphoma, NOS - - Atypical Teratoid Rhabdoid Tumor, CNS WHO Grade 4 + - Primary Cutaneous Follicle Center Lymphoma + - Choroid Plexus Carcinoma, WHO Grade 3 + - Infiltrating Duct Carcinoma NOS - T Lymphoblastic Leukemia/Lymphoma - - Chronic Eosinophilic Leukemia - - Glial Neoplasm, Favor Pilocytic Astrocytoma - - Mixed Germ Cell Tumor, Acute Megakaryoblastic Leukemia - - Atypical Teratoid/Rhabdoid Tumor - - Favor Ganglioglioma - - Tubular Adenocarcinoma - - Precursor T-Cell Lymphoblastic Leukemia - - Astrocytoma, Anaplastic - - Osteosarcoma, NOS - - Pilocytic Astrocytoma, Diffuse Leptomeningeal Glioneuronal Tumor, Glioneuronal And Neuronal Tumors - - Diffuse Glioma - - B Lymphoblastic Leukemia/Lymphoma With T(V;11q23); MLL Rearranged - - "Ependymoma, NOS, Supratentorial Ependymoma, ZFTA Fusion-Positive" - - Acinar Cell Carcinoma - - Acute Myeloid Leukemia With Myelodysplasia-Related Changes, Juvenile Myelomonocytic Leukemia, NOS - - "Neoplasm, Uncertain Whether Benign Or Malignant, Medulloblastoma, Medulloblastoma, SHH-Activated And TP53-Wildtype" - - Anaplastic Ganglioglioma - - Squamous Cell Carcinoma, Small Cell, Nonkeratinizing - - "Ganglioglioma, NOS, Diffuse Astrocytoma, MYB- Or MYBL1-Altered, Low-Grade Glioma" - - Unclassified Sarcoma With Round Cell Morphology - - Pilomyxoid Astrocytoma - - Lung Squamous Cell Carcinoma, NOS - - Medulloblastoma, NOS, Diffuse Hemispheric Glioma, H3 G34-Mutant, High-Grade Glioma - - Hepatocellular Carcinoma, NOS, Nephroblastoma, NOS - - Glioma, Malignant, Diffuse Midline Glioma, H3 K27-Altered, High-Grade Glioma - - Papillary Carcinoma, Follicular Variant - - Malignant Histiocytosis - - Acute Myeloid Leukemia, NOS - - Pineoblastoma, Other, Other CNS Tumor, NOS Or NEC - - Choroid Plexus Papillary Tumor - - Atypical Teratoid/Rhabdoid Tumor, ATRT, NOS Or NEC - - Pancreatobiliary-Type Carcinoma - - Cribriform Carcinoma, NOS - - Neoplasm, Malignant, Low-Grade Glioma, Low-Grade Glioma, NOS Or NEC - - Neoplasm, Malignant, Medulloblastoma, Medulloblastoma, WNT-Activated - - Neoplasm, Uncertain Whether Benign Or Malignant, Low-Grade Glioma, Pilocytic Astrocytoma - - Cystosarcoma Phyllodes, NOS - - Rhabdomyosarcoma, NOS - - Carcinoma NOS - - Atypical Teratoid/Rhabdoid Tumor, ATRT-TYR - - Genital Rhabdomyoma - - Oligodendroglioma, NOS, High-Grade Glioma, Oligodendroglioma, IDH-Mutant, And 1p/19q-Codeleted - - Neuroepithelioma, NOS + - Glioma, Malignant, Other, Other CNS Tumor, NOS Or NEC + - Mixed Germ Cell Tumor, Myelodysplastic Syndrome With Excess Blasts + - Clear Cell Adenocarcinoma, NOS + - Cutaneous T-Cell Lymphoma, NOS + - Germinoma + - Neoplasm, Malignant, ATRT, NOS Or NEC, Atypical Teratoid/Rhabdoid Tumor + - Meningeal Melanocytoma + - Neoplasm, Malignant, Medulloblastoma, Medulloblastoma, NOS Or NEC + - Acute Promyelocytic Leukemia, T(15;17)(Q22;Q11-12) + - Alveolar Soft Part Sarcoma + - Astrocytoma, NOS, Low-Grade Glioma, Low-Grade Glioma, NOS Or NEC - Mixed Epithelioid And Spindle Cell Melanoma - - Teratoma - - Neoplasm, Malignant, Diffuse Midline Glioma, H3 K27-Altered, High-Grade Glioma - - Mucinous Adenocarcinoma - - Neoplasm, Uncertain Whether Benign Or Malignant, CNS Sarcoma, Ewing Sarcoma - - Hamartoma - - Astrocytoma - - Adamantinomatous Craniopharyngioma (CNS WHO Grade 1) - - Malignant Epithelioid And Myxoid Neoplasm - - Adamantinomatous Craniopharyngioma - - Sex Cord-Gonadal Stromal Tumor, Mixed Forms - - Hepatocellular Carcinoma, Fibrolamellar - - Pilocytic Astrocytoma, WHO Grade 1, KIAA1549-BRAF Fusion + - CNS Embryonal Tumor, NOS, CNS Embryonal Tumor, NOS Or NEC, Other CNS Embryonal Tumors + - Malignant Tumor, Spindle Cell Type + - Glioma, Malignant, Glioneuronal And Neuronal Tumors, Glioneuronal And Neuronal Tumors, NOS Or NEC + - Glioma, Malignant, Low-Grade Glioma, Low-Grade Glioma, NOS Or NEC + - Endometrioid Carcinoma, NOS + - Lung Squamous Cell Carcinoma, NOS + - Papillary Urothelial Carcinoma, Non-Invasive + - Neuroblastoma, Undifferentiated Type + - Periosteal Osteosarcoma + - Mixed Phenotype Acute Leukemia, B/Myeloid, NOS + - Inflammatory Carcinoma + - Glioblastoma, NOS + - Carcinoma, NOS, Medulloblastoma, Medulloblastoma, NOS Or NEC + - Squamous Cell Carcinoma, NOS + - Hypocellular Low Grade Lesion + - Glioblastoma Multiforme + - Pancreas-Undifferentiated Carcinoma + - Differentiating Neuroblastoma + - Myxoid Spindle Cell Tumor + - Merkel Cell Tumor + - Malignant Peripheral Nerve Sheath Tumor, NOS, CNS Sarcoma, CNS Sarcoma, NOS Or NEC + - Hemangioma, NOS + - Acute Myeloid Leukemia With Abnormal Marrow Eosinophils + - Well Differentiated Neuroendocrince Tumor, Grade 1 - Ganglioglioma, Anaplastic - - Head & Neck Squamous Cell Carcinoma - - Mixed Glioma - - Renal Cell Carcinoma, NOS + - Ependymoma WHO Grade 2 + - Synovial Sarcoma, NOS + - Thymic Carcinoma, NOS - Tumor Cells, Malignant - - Low Grade Glioneuronal Tumor - - Myxofibrosarcoma - - Chordoma - - Infiltrating Duct Carcinoma NOS - - Squamous Cell Carcinoma NOS - - Posterior Fossa Ependymoma, CNS WHO Grade 2 - - "Desmoplastic Nodular Medulloblastoma, Medulloblastoma, Medulloblastoma, SHH-Activated And TP53-Wildtype" - - Choroid Plexus Neoplasm - - Chordoma, NOS, Ganglioneuroblastoma - - Colon Adenocarcinoma - - Hypocellular Low Grade Lesion - - Mucous Adenocarcinoma - - Glioma, Malignant, High-Grade Glioma, Infant-Type Hemispheric Glioma - - Myeloid Sarcoma - - Smooth Muscle Tumor Of Uncertain Malignant Potential + - Pilomyxoid Astrocytoma + - Papillary Carcinoma, Columnar Cell + - Plexiform Fibrohistiocytic Tumor + - Astrocytoma, NOS, Angiocentric Glioma, Low-Grade Glioma + - Carcinoma, Undifferentiated, NOS + - Dermatofibrosarcoma Protuberans, NOS + - High Grade Glioma With Necrosis, WHO Grade 4 + - Infiltrating ductular carcinoma + - Acute Myeloid Leukemia With Myelodysplasia-Related Changes, Juvenile Myelomonocytic Leukemia, NOS + - Infiltrating Duct And Mucinous Carcinoma + - Intraductal Papillary Carcinoma - Serous Surface Papillary Carcinoma - - Desmoplastic Fibroma - - Astrocytoma, NOS, Low-Grade Glioma, Pleomorphic Xanthoastrocytoma - - Ependymoma NOS - - Morphologically Consistent With Pilocytic Astrocytoma, WHO Grade 1 - - Sclerosing Stromal Tumor - - Astrocytoma, NOS, Other, Other CNS Tumor, NOS Or NEC - - Embryonal Rhabdomyosarcoma, High-Grade - - Lymphoid Leukemia, NOS - - Nephroblastoma, NOS - - Tumor Cells, Uncertain Whether Benign Or Malignant - - Astrocytic Glioma, Histologically Low-Grade, Most Compatible With Pilocytic Astrocytoma - - Adenocarcinoma With Mixed Subtypes - - Neoplasm, Malignant, Uncertain Whether Primary Or Metastatic - - Stroma Poor, Poorly Differentiated Neuroblastoma With Low MKI, Favorable Histology - - Meningiomatosis, NOS - - Meningothelial Meningioma, Grade 1 - - Ganglioglioma, NOS, Ependymoma, Supratentorial Ependymoma, NOS Or NEC - - Spindle Cell Melanoma, Type B - - Dysembryoplastic Neuroepithelial Tumor With Adjacent Cortical Dysplasia, WHO Grade 1 - - Atypical Teratoid/Rhabdoid Tumor, ATRT-MYC - - Clear Cell Meningioma, Meningioma, Other - - Atypical Teratoid/Rhabdoid Tumor, INI1/SMARCB1-Altered, WHO Grade 4 + - Invasive Carcinoma + - High Grade Malignant Epithelioid Neoplasm - Favor Pilocytic Astrocytoma With Increased Proliferation Indices - - Medulloblastoma, NOS - - Neuroblastoma, Schwannian Stroma Poor, Poorly Differentiated, Low MKI, Favorable Histology - - Cholangiocarcinoma - - Rhabdomyosarcoma, Embryonal Subtype - - Dermatofibrosarcoma Protuberans, Fibrosarcomatous - - Olfactory Neuroblastoma - - Familial Adenomatous Polyposis - - Glioma, Malignant, Low-Grade Glioma, Low-Grade Glioma, NOS Or NEC - - Ameloblastic Carcinosarcoma - - Amelanotic Melanoma - - Myelodysplastic Syndrome With Single Lineage Dysplasia - - Neoplasm, Malignant - - Malignant Lymphoma, NOS - - Astrocytoma, IDH-Mutant, CNS WHO Grade 3 - - Favor Teratoma - - Pineoblastoma - - Thymoma, NOS - - Hemangiosarcoma - - Myeloid Leukemia, NOS - - Meningeal Melanomatosis - - Anaplastic Astrocytoma, IDH-Wildtype, Glioblastoma, IDH Wildtype - - CNS Embryonal Tumor With Rhabdoid Features - - Abdominal Fibromatosis - - Embryonal Neoplasm With INI-1 Loss By Immunohistochemistry - - Granulosa Cell Tumor, Malignant - - Leukemia, NOS - - Medulloblastoma WHO Grade 4 - - Adenocarcinoma In Situ In Adenomatous Polyp - - Medulloblastoma, SHH-Activated And TP53-Wildtype - - Neurofibroma, NOS - - Malignant Lymphoma, Non-Hodgkin, NOS - - Glial Neoplasm, Astrocytoma - - Acute Promyelocytic Leukaemia, T(15;17)(Q22;Q11-12) - - Embryonal Tumor With Multilayered Rosettes C19MC-Altered - - Hepatosplenic T-Cell Lymphoma, Precursor Cell Lymphoblastic Leukemia, NOS - - Brain Tumor - - Neoplasm, NOS - - Acute Myeloid Leukemia (Megakaryoblastic) With T(1;22)(P13;Q13); RBM15-MKL1 - - Leydig Cell Tumor, Benign - - Oligodendroglioma, NOS, Low-Grade Glioma, Low-Grade Glioma, NOS Or NEC - - Osteoblastoma, NOS - - Bronchio-Alveolar Carcinoma, Mucinous - - Neoplasm, Uncertain Whether Benign Or Malignant, Diffuse Pediatric-Type High-Grade Glioma, H3-Wildtype And IDH-Wildtype, High-Grade Glioma - - Arteriovenous Malformation - - Meningeal Melanocytoma - - Precursor B-Cell Acute Lymphoblastic Leukemia With Hyperdiploidy - - Myxoid Spindle Cell Tumor - - Adenocarcinoma In Villous Adenoma - - Papillary Adenocarcinoma, NOS - - Poorly Differentiated Chordoma - - Adenoid Cystic Carcinoma - - Pigmented Dermatofibrosarcoma Protuberans - - Oligoastrocytoma, NOS - - Myelodysplastic Syndrome With Multilineage Dysplasia - - Astrocytoma, Anaplastic, NOS - - Medulloblastoma, Classic (Biphasic) Histologic Type, Non-SHH/Non-WNT Molecular Group, CNS WHO Grade 4 - - Signet Ring Cell Carcinoma - - B Lymphoblastic Leukemia/Lymphoma With T(9;22)(Q34;Q11.2); BCR-ABL1 - - Control - - Adenocarcinoma,NOS, Glioblastoma, NOS - - Adenocarcinoma With Neuroendocrine Differentiation - - Retinoblastoma - - Acute Promyelocytic Leukemia, T(15;17)(Q22;Q11-12) - - Germ Cell Tumor, Nonseminomatous - - Adenocarcinoma - - Malignant Tumor, Spindle Cell Type - - Medulloblastoma, Classic Histology - - Pilocytic Astrocytoma, CNS WHO Grade 1 - - Squamous Cell Carcinoma In Situ, NOS - - Neoplasm + - Medulloblastoma, Classic Morphology, CNS WHO Grade 4, NON-WNT/NON-SHH, Group 4 Subtype By Methylation - Composite Hodgkin And Non-Hodgkin Lymphoma - - Adenocarcinoma, Intestinal Type - - Astroblastoma, MN1-Altered. Histologically High-Grade - - Nasopharyngeal Carcinoma - - Glioma, Malignant, Glioneuronal And Neuronal Tumors, Glioneuronal And Neuronal Tumors, NOS Or NEC - - Neoplasm, Uncertain Whether Benign Or Malignant, High-Grade Glioma, High-Grade Glioma, NOS Or NEC - - Central Osteosarcoma, NOS - - Merkel Cell Tumor - - Merkel Cell Carcinoma - - Adenocarcinoma, Endocervical Type - - Serous Cystadenocarcinoma, NOS - - Xanthogranuloma - - Oligodendroglioma, Anaplastic - - Atypical Smooth Muscle Neoplasm - - High Grade Spindle Cell Sarcoma - - Neoplasm, Malignant, Glioneuronal And Neuronal Tumors, Glioneuronal And Neuronal Tumors, NOS Or NEC - - Ductal Carcinoma In Situ, NOS - - Epithelioid Mesothelioma, Malignant - - Brain Tumor, Low Grade Glioma - - Combined Small Cell-Squamous Cell Carcinoma - - Myofibromatosis - - Adamantinomatous Craniopharyngioma, WHO Grade 1 - - Chronic Myeloid Leukemia, BCR-ABL1-Positive - - Basal Cell Adenocarcinoma - - Undifferentiated Nasopharyngeal Carcinoma - - Chronic Myelogenous Leukemia - - Medulloblastoma, WHO Grade 4 - - Fibrosarcoma, NOS - - Juvenile Myelomonocytic Leukemia - - Tenosynovial Giant Cell Tumor, NOS - - Acute Myeloid Leukemia With Mutated NPM1 - - Pancreas-Undifferentiated Carcinoma - - Precursor Cell Lymphoblastic Lymphoma, NOS - - Squamous Cell Carcinoma, Large Cell, Nonkeratinizing, NOS + - Atypical Teratoid/Rhabdoid Tumor, ATRT, NOS Or NEC + - Atypical Teratoid/Rhabdoid Tumor, ATRT-TYR + - Primary Cutaneous CD30 Positive T-Cell Lymphoproliferative Disorder + - Hemangioendothelioma, NOS + - Hypercellular Lesion With Atypia + - Embryonal Carcinoma, NOS + - Subependymoma, Ependymoma, Supratentorial Ependymoma, NOS Or NEC + - Germ Cell Tumor, Nonseminomatous + - Adrenal Cortical Carcinoma + - Olfactory Neurocytoma - Large Cell Medulloblastoma, Medulloblastoma, Medulloblastoma, Non-WNT/Non-SHH - - Ductal Carcinoma NOS - - High Grade Malignant Peripheral Nerve Sheath Tumor With Heterologous Rhabdomyoblastic Differentiation (Malignant Triton Tumor) - - Myxopapillary Ependymoma, Ependymoma - - Retinoblastoma, Grade 3 - - Sarcoma, NOS - - Malignant Peripheral Nerve Sheath Tumor, NOS - - Spindle Cell Rhabdomyosarcoma - - Neoplasm, Uncertain Whether Benign Or Malignant, Medulloblastoma, Medulloblastoma, Non-WNT/Non-SHH - - Serous Adenocarcinoma, NOS - - Neurofibromatosis, NOS - - T-Lymphoblastic Lymphoma - - Neoplasm, Malignant, CNS Embryonal Tumor, NOS Or NEC, Other CNS Embryonal Tumors - - Medulloepithelioma, NOS - - Glioma - - Pineoblastoma, Other CNS Embryonal Tumors + - Nuclear Protein In Testis (NUT)-Associated Carcinoma + - Epithelial-Myoepithelial Carcinoma + - Squamous Cell Carcinoma, Keratinizing, NOS + - Ganglioneuroma, Other, Schwannoma + - Glomus Tumor, Malignant + - Neoplasm, Malignant, Low-Grade Glioma, Low-Grade Glioma, NOS Or NEC + - Malignant Lymphoma, Non-Hodgkin, NOS + - Embryonal Rhabdomyosarcoma, NOS, CNS Embryonal Tumor, NOS + - Tenosynovial Giant Cell Tumor, NOS + - Histologically Low-Grade Glioma + - Chordoma, NOS, Ganglioneuroblastoma - Ependymoma, NOS - - Adrenal Cortical Adenoma, NOS - - Appearances Consistent With Alveolar Soft Part Sarcoma - - Hypercellular Lesion With Atypia - - Tumor Cells, Uncertain Whether Benign Or Malignant, Other CNS Embryonal Tumors, Pineoblastoma - - Myeloid Leukemia Associated With Down Syndrome + - Invasive Mammary Carcinoma - Rhabdoid Tumor, Malignant - - Carcinoma, NOS, Medulloblastoma, Medulloblastoma, NOS Or NEC - - Astrocytoma, NOS, Astrocytoma, IDH-Mutant, Low-Grade Glioma - - Lymphoproliferative Disorder, NOS + - Medulloblastoma, Classic Histology + - Adenocarcinoma In Villous Adenoma + - Undifferentiated Sarcoma + - Papillary Thyroid Carcinoma + - Renal Cell Adenocarcinoma + - Hodgkin Lymphoma, NOS + - Malignant Histiocytosis + - Desmoplastic Nodular Medulloblastoma, Medulloblastoma, Medulloblastoma, SHH-Activated And TP53-Wildtype + - Solid Pseudopapillary Tumor Of Ovary + - Astrocytic Glioma, Histologically Low-Grade, Most Compatible With Pilocytic Astrocytoma + - Inflammatory Myofibroblastic Tumor With An Associated Odontogenic Keratocyst + - Myofibromatosis + - Small Round Blue Cell Tumor + - Meningioma, Atypical, CNS WHO Grade 2 + - Neoplasm, Uncertain Whether Benign Or Malignant, Adamantinomatous Craniopharyngioma, Craniopharyngioma + - Pilocytic Astrocytoma + - Lobular And Ductal Carcinoma + - Desmoplastic/Nodular Medulloblastoma (Histologically Defined), CNS WHO Grade 4 + - Malignant Peripheral Nerve Sheath Tumor With Rhabdomyoblastic Differentiation + - Tumor Cells, Malignant, Diffuse Leptomeningeal Glioneuronal Tumor, Glioneuronal And Neuronal Tumors - Malignant Tumor - - Embryonal Carcinoma, NOS, Ependymoma, Supratentorial Ependymoma, NOS Or NEC - - Acute Myeloid Leukemia Without Maturation - - Neoplasm, Malignant, ATRT, NOS Or NEC, Atypical Teratoid/Rhabdoid Tumor - - Dysembryoplastic Neuroepithelial Tumor - - Craniopharyngioma, NOS - - Parosteal Osteosarcoma - - Schwannoma, NOS - - Squamous Cell Carcinoma, Keratinizing, NOS - - Craniopharyngioma, Adamantinomatous, Adamantinomatous Craniopharyngioma - - Neuroblastoma, NOS - - Angiocentric Glioma - - Gastrointestinal Stromal Tumor - - Meningothelial Meningioma - - Astrocytoma, NOS, Low-Grade Glioma, Subependymal Giant Cell Astrocytoma - - Metastatic Secondary Tumors - - Mesoblastic Nephroma - - Not Reported - - Rhabdomyoma, NOS - - Favor Posterior Fossa Ependymoma, WHO GRADE 3 - - Clear Cell Meningioma - - Marginal Zone B-Cell Lymphoma, NOS - - Gangliocytoma, NOS - - Acute Monoblastic Leukemia - - Ganglioneuroma - - Glioma, Malignant, Diffuse Pediatric-Type High-Grade Glioma, H3-Wildtype And IDH-Wildtype, High-Grade Glioma + - Brain Tumor + - Gastrointestinal Stromal Tumor, Benign + - Rasmussen Encephalitis + - Medulloblastoma, NOS, Diffuse Hemispheric Glioma, H3 G34-Mutant, High-Grade Glioma + - Adenocarcinoma,NOS, Glioblastoma, NOS - Malignant Peripheral Nerve Sheath Tumor (Mpnst) + - Embryonal Sarcoma + - Neoplasm, Malignant, Glioneuronal And Neuronal Tumors, Glioneuronal And Neuronal Tumors, NOS Or NEC + - Anaplastic Large Cell Lymphoma, T-Cell And Null-Cell Type + - Teratoma, NOS + - Pleomorphic Xanthoastrocytoma, NOS + - Infiltrating duct and lobular carcinoma + - Sclerosing Stromal Tumor + - Tumor Cells, Uncertain Whether Benign Or Malignant + - Acute Myeloid Leukemia, NOS, Juvenile Myelomonocytic Leukemia, NOS + - Lobular Carcinoma, NOS + - Schwannoma, NOS, Low-Grade Glioma, Low-Grade Glioma, NOS Or NEC + - Sarcoma, NOS + - CNS Embryonal Tumor With Rhabdoid Features + - Glial Neoplasm, Astrocytoma + - Pancreas-Adenosquamous Carcinoma + - Mesenchymal Lesion + - Serous Adenocarcinoma, NOS + - Hepatoblastoma, NOS + - Astrocytoma, NOS, Diffuse Pediatric-Type High-Grade Glioma, H3-Wildtype And IDH-Wildtype, High-Grade Glioma + - Sex Cord-Gonadal Stromal Tumor, NOS + - Adenoid Cystic Carcinoma + - Embryonal Tumor + - Acute Myeloid Leukemia, T(8;21)(Q22;Q22) + - Spindled And Epithelioid Tumor With Features Of Intracranial Mesenchymal Tumor + - Cavernoma + - Malignant Tumor, Small Cell Type + - Mixed Germ Cell Tumor, CNS Germ Cell Tumors, CNS Germinoma + - Low Grade Neoplasm. Features Suggestive Of Pilocytic Astrocytoma. + - Neoplasm, Malignant, Diffuse Pediatric-Type High-Grade Glioma, H3-Wildtype And IDH-Wildtype, High-Grade Glioma + - Serous Carcinoma, NOS + - Metastatic Secondary Tumors + - Yolk Sac Tumor + - Morphologically Consistent With Pilocytic Astrocytoma, WHO Grade 1 + - Neuroendocrine Tumor, NOS + - Mixed Germ Cell Tumor, Acute Megakaryoblastic Leukemia + - Juvenile Myelomonocytic Leukemia + - Acute Myeloid Leukemia With T(9;11)(P22;Q23); MLLT3-MLL + - Glioma, Malignant, High-Grade Glioma, Pleomorphic Xanthoastrocytoma + - Papillary Glioneuronal Tumor, WHO Grade 1 + - Central Neuroblastoma + - Dysembryoplastic Neuroepithelial Tumor + - Mixed Adenocarcinoma And Squamous Cell Carcinoma, Pancreatobiliary-Type Carcinoma + - Subcutaneous Panniculitis-Like T-Cell Lymphoma + - Myofibroblastic Tumor + - Nephroblastoma, NOS + - Neoplasm, Uncertain Whether Benign Or Malignant, Medulloblastoma, Medulloblastoma, SHH-Activated And TP53-Wildtype + - Malignant Melanoma, NOS, Meningeal Melanocytic Neoplasms (Includes Melanoma), Other + - Carcinoma, Metastatic, NOS + - Follicular Carcinoma, Minimally Invasive + - Angiomyofibroblastoma + - Classic Medulloblastoma, CNS WHO Grade 4 + - Neoplasm, Uncertain Whether Benign Or Malignant, Low-Grade Glioma, Subependymal Giant Cell Astrocytoma + - Atypical Teratoid/Rhabdoid Tumor, ATRT-MYC + - Astroblastoma + - Meningothelial Meningioma, Meningioma, Other + - Poorly Differentiated Chordoma + - Chronic Myelogenous Leukemia + - Pleomorphic Sarcoma + - Supratentorial Ependymoma CNS WHO Grade 3 + - Leydig Cell Tumor, NOS + - Adenosarcoma + - Pigmented Dermatofibrosarcoma Protuberans + - Astrocytoma, NOS, Other, Other CNS Tumor, NOS Or NEC + - Astrocytoma, NOS, High-Grade Glioma, High-Grade Glioma, NOS Or NEC + - Astrocytoma, NOS, Astrocytoma, IDH-Mutant, Low-Grade Glioma + - Myxofibrosarcoma + - Precursor T-Cell Lymphoblastic Leukemia + - Neurocytoma + - Adrenal Cortical Tumor, NOS + - Neoplasm, Malignant, ATRT-SHH, Atypical Teratoid/Rhabdoid Tumor + - Acute Myeloid Leukemia (Megakaryoblastic) With T(1;22)(P13;Q13); RBM15-MKL1 + - Neoplasm, Malignant, CNS Neuroblastoma, FOXR2-Activated, Other CNS Embryonal Tumors + - Infiltrating duct and mucinous carcinoma + - Adenocarcinoma In Situ, NOS + - Mucinous Adenocarcinoma + - Retinoblastoma, NOS - Anaplastic Ependymoma - - Malignant Sarcoma With DICER1 Mutation, Favor Primary Intracranial Sarcoma, DICER1 Mutant + - Germ Cell Tumor, Nonseminomatous, CNS Germ Cell Tumors, CNS Non-Germinomatous Germ Cell Tumor + - Acute Monoblastic And Monocytic Leukemia + - Hemangioblastoma, CNS WHO Grade 1 + - Alveolar Rhabdomyosarcoma + - Medullary Carcinoma, NOS + - Adult Granulosa Cell Tumor Of Testis + - Medulloblastoma, WHO Grade 4 + - Craniopharyngioma, Adamantinomatous + - High Grade Malignant Peripheral Nerve Sheath Tumor With Heterologous Rhabdomyoblastic Differentiation (Malignant Triton Tumor) + - Spindle Cell Rhabdomyosaroma + - Diffuse Midline Glioma, H3 K27M-Mutant + - Epithelioid Sarcoma, NOS + - Myoepithelial Carcinoma + - Multiple Myeloma + - Triple-Negative Breast Carcinoma + - Hepatocellular Carcinoma, NOS, Nephroblastoma, NOS + - Neuroblastoma, Schwannian Stroma Poor, Poorly Differentiated, Low MKI, Favorable Histology + - Sertoli Cell Tumor, NOS + - Ossifying Fibroma - Pleomorphic Liposarcoma - - Lymphoepithelial Carcinoma - - Embryonal Tumor With Multilayered Rosettes With C19MC Alteration - - Ganglioglioma, NOS, Low-Grade Glioma, Low-Grade Glioma, NOS Or NEC - - Mixed-Phenotype Acute Leukemia, B/Myeloid, Not Otherwise Specified - - Oligoastrocytoma, NOS, Glioneuronal And Neuronal Tumors, Papillary Glioneuronal Tumor - - Supratentorial Ependymoma CNS WHO Grade 3 - - Follicular Adenocarcinoma, NOS - - Neoplasm, Uncertain Whether Benign Or Malignant, Medulloblastoma, Medulloblastoma, NOS Or NEC - - Central Neurocytoma - - Carcinoma, Undifferentiated, NOS - - Papillary Thyroid Carcinoma, Classic Type - - Invasive Mammary Carcinoma - - Ganglioglioma, NOS, Other, Other CNS Tumor, NOS Or NEC - - T-Lymphoblastic Leukemia - - Burkitt Lymphoma, NOS - - Intraductal Carcinoma NOS - - Poorly Differentiated Sertoli-Leydig Cell Tumor With Heterologous Rhabdomyosarcomatous Differentiation - - Glioma, Malignant, Other, Other Low-Grade B-Cell Lymphomas Of The CNS - - "Medulloblastoma, NOS, Medulloblastoma, SHH-Activated And TP53-Wildtype" - - Gastrointestinal Stromal Tumor, Benign - - Ependymoma, NOS, Supratentorial Ependymoma, NOS Or NEC - - Prostate Cancer - - Poorly Differentiated Neuroblastoma - - Undiagnosed Spindle Cell Tumor - - Neuroblastoma, Undifferentiated Type - - Schwannoma - - Well Differentiated Neuroendocrince Tumor, Grade 1 - - Seminoma, NOS - - Hepatoblastoma, NOS + - Amelanotic Melanoma + - Liposarcoma, NOS + - Non-Germinomatous Germ Cell Tumor + - Lactotroph Adenoma + - Transient Abnormal Myelopoiesis + - Favor Posterior Fossa Ependymoma, WHO GRADE 3 + - Dysembryoplastic Neuroepithelial Tumor, Low-Grade Glioma, Low-Grade Glioma, NOS Or NEC + - Carcinoma In Situ, NOS + - Ependymoma, NOS, Medulloblastoma, Medulloblastoma, Non-WNT/Non-SHH + - Ependymoma, Anaplastic + - Glial Neoplasm, Favor Pilocytic Astrocytoma + - Gastrointestinal Stromal Tumor, NOS + - Serous Cystadenocarcinoma, NOS + - Papillary Lesion With Atypical/High Grade Features + - Spinal Ependymoma, WHO Grade 2 + - Ductal Carcinoma In Situ, NOS + - Infiltrating Ductal Carcinoma + - Mixed Type Rhabdomyosarcoma + - Medulloblastoma, SHH-Activated And TP53-Mutant + - Precursor B-Cell Acute Lymphoblastic Leukemia With Hyperdiploidy - Mesenchymal Chondrosarcoma, Low-Grade Glioma, Low-Grade Glioma, NOS Or NEC - - Embryonal Rhabdomyosarcoma, NOS - - Low-Grade Glioneuronal, Neuronal Tumor - - Angiomyosarcoma - - CNS Embryonal Tumor, NOS - - Sertoli-Leydig Cell Tumor, Intermediate Differentiation, With Heterologous Elements - - Subependymal Giant Cell Astrocytoma - - Infiltrating Duct Mixed With Other Types Of Carcinoma - - Ganglioneuroblastoma, Nodular Type - - Pancreas-Adenosquamous Carcinoma + - Cribriform Carcinoma, NOS + - Myxopapillary Ependymoma, Anaplastic + - Ependymoma, Anaplastic, Supratentorial Ependymoma, NOS Or NEC + - Astrocytoma, IDH-Mutant, WHO Grade 2 + - Meningioangiomatosis + - Acute Myeloid Leukemia, NOS, Myeloproliferative Neoplasm, Unclassifiable + - Endometrioid carcinoma, NOS + - Adenocarcinoma In Situ, Non-Mucinous + - Medulloblastoma, NOS, Medulloblastoma, Group 4 + - Papillary Carcinoma, Follicular Variant + - Metaplastic Carcinoma, NOS + - Choroid Plexus Carcinoma, Choroid Plexus Tumors + - Poorly Differentiated Sertoli-Leydig Cell Tumor With Heterologous Rhabdomyosarcomatous Differentiation + - Low Grade Glioma + - Sex Cord Stromal Tumor NOS + - Stroma Poor, Poorly Differentiated Neuroblastoma With Low MKI, Favorable Histology + - Residual Low Grade Neuroendocrine Tumor (Typical Carcinoid) + - Melanotic Neuroectodermal Tumor + - Ependymoma, NOS, Medulloblastoma, Medulloblastoma, NOS Or NEC + - Glioma, Malignant, Angiocentric Glioma, Low-Grade Glioma + - Malignant Lymphoma, NOS + - Medulloblastoma WHO Grade 4 + - Choroid Plexus Papillary Tumor + - Follicular Adenocarcinoma, Well Differentiated, Neuroblastoma, NOS + - Neuroepithelial Tumor + - Myelodysplastic Syndrome With Multilineage Dysplasia + - Primary Mediastinal (Thymic) Large B-Cell Lymphoma + - Mast Cell Leukemia + - Ganglioneuroblastoma + - Pheochromocytoma, NOS - Papillary Serous Adenocarcinoma - - Cavernoma - - Fibrillary Astrocytoma - - Pilocytic Astrocytoma, Low-Grade Glioma, Pleomorphic Xanthoastrocytoma - - Malignant Glioma - - Malignant Peripheral Nerve Sheath Tumor, NOS, CNS Sarcoma, CNS Sarcoma, NOS Or NEC - - Small Round Blue Cell Tumor - - Adenocarcinoma In Adenomatous Polyposis Coli - - CPNET - - Pilocytic Astrocytoma WHO Grade 1 - - Low Grade Glioma - - Tumor Cells, Malignant, Diffuse Leptomeningeal Glioneuronal Tumor, Glioneuronal And Neuronal Tumors - - Endometrioid Adenocarcinoma, NOS - - Carcinoma, Metastatic, NOS - - Alveolar Soft Part Sarcoma - - Papillary Tumor Of Pineal Region - - Favor Pilocytic Astrocytoma, CNS WHO Grade 1 - - Acute Leukemia, NOS - - Hemangioendothelioma, NOS + - Mixed Germ Cell Tumor + - Lymphoid Leukemia, NOS + - Ependymoma NOS + - Smooth Muscle Tumor Of Uncertain Malignant Potential + - Combined Small Cell-Large Carcinoma + - Sertoli Leydig Cell Tumor + - Anaplastic Large Cell Lymphoma, ALK Positive + - Meningioma, Malignant + - Rhabdoid Tumor, NOS + - Merkel Cell Carcinoma + - Neoplasm, Uncertain Whether Benign Or Malignant, Meningioma, Other + - Lymphoma, NOS + - Gangliocytoma, NOS + - Glioblastoma, NOS, High-Grade Glioma, High-Grade Glioma, NOS Or NEC + - Mucinous Non-Cystic Carcinoma - Mucinous Carcinoma - - Myelodysplastic Syndrome, NOS - - Desmoplastic/Nodular Medulloblastoma - - Angiomatoid Fibrous Histiocytoma - - Gastrointestinal Stromal Tumor, NOS - - Neoplasm, Malignant, Medulloblastoma, Medulloblastoma, NOS Or NEC - - Small Cell Carcinoma, NOS - - Small Cell Neuroendocrine Carcinoma - - Secretory Carcinoma - - Neuroma, NOS - - Ependymoma, Anaplastic - - Myxopapillary Ependymoma (CNS WHO Grade II) - - Nodular Melanoma - - Transient Abnormal Myelopoiesis - - Choriocarcinoma, NOS - - Choroid Plexus Papilloma, NOS, Other CNS Embryonal Tumors, Pineoblastoma - - Desmoplastic/Nodular Medulloblastoma (Histologically Defined), CNS WHO Grade 4 - - Histologically Low-Grade Glioma - - Infiltrating Duct And Lobular Carcinoma - - Juvenile Granulosa Cell Tumor - - Astrocytoma, NOS, Low-Grade Glioma, Low-Grade Glioma, NOS Or NEC - - Central Neurocytoma, Glioneuronal And Neuronal Tumors - - Giant Cell Tumor Of Bone, Malignant + - Astrocytoma, NOS, Low-Grade Glioma, Pilocytic Astrocytoma + - Ganglioglioma, NOS, Low-Grade Glioma, Low-Grade Glioma, NOS Or NEC - High Grade Carcinosarcoma - - Malignant Neoplasm With Rhabdomyoblastic Differentiation, High Grade - - Glioma, Malignant, Diffuse Hemispheric Glioma, H3 G34-Mutant, High-Grade Glioma - - Glioblastoma Multiforme - - Acute Myeloid Leukemia, NOS, Juvenile Myelomonocytic Leukemia, NOS - - Glial Neoplasm Showing High-Grade Features - - Sertoli-Leydig Cell Tumor Of Intermediate Differentiation, NOS - - Glioma, Malignant, Medulloblastoma, Medulloblastoma, Non-WNT/Non-SHH - - Chronic Myeloid Leukemia, NOS + - Subependymal Giant Cell Astrocytoma, Glioneuronal And Neuronal Tumors, Glioneuronal And Neuronal Tumors, NOS Or NEC + - Squamous Cell Carcinoma, Metastatic, NOS + - Myeloid Leukemia Associated With Down Syndrome + - Meningeal Melanomatosis + - Neuroepithelial Tumor With Glioneuronal-Like Features + - Squamous Cell Carcinoma, Large Cell, Nonkeratinizing, NOS + - Meningiomatosis, NOS + - Neoplasm, Uncertain Whether Benign Or Malignant, High-Grade Glioma, High-Grade Glioma, NOS Or NEC + - Oligodendroglioma, NOS, Low-Grade Glioma, Oligodendroglioma, IDH-Mutant, And 1p/19q-Codeleted + - Ependymoma, NOS, Posterior Fossa Ependymoma, Group PFA + - CNS Embryonal Tumor, NOS + - Favor Anaplastic Ependymoma + - Diffuse Glioma + - Adamantinomatous Craniopharyngioma (CNS WHO Grade 1) + - Medulloblastoma, Classic Variant, WHO Grade 4 + - Neoplasm, Uncertain Whether Benign Or Malignant, Astrocytoma, IDH-Mutant, Low-Grade Glioma + - Glioneuronal Tumor With Focal Increased Atypia + - High Grade Neuroepithelial Tumor + - Squamous Cell Carcinoma, Small Cell, Nonkeratinizing + - Mixed Phenotype Acute Leukemia With T(V;11q23); MLL Rearranged + - Acute Myeloid Leukemia, Minimal Differentiation + - Fibrillary Astrocytoma + - Chordoma, NOS + - Undifferentiated Leukemia + - Myofibroma + - Neoplasm, Malignant + - Pleomorphic Xanthoastrocytoma, NOS, Low-Grade Glioma + - Invasive Ductal Carcinoma + - Subependymal Giant Cell Astrocytoma + - Embryonal Rhabdomyosarcoma With Anaplastic Features + - High-Grade Neuroepithelial Tumor + - Low Grade Glioneuronal Tumor + - Neoplasm, Malignant, Medulloblastoma, Medulloblastoma, Non-WNT/Non-SHH + - Acute Myeloid Leukemia Without Maturation + - Adenocarcinoma With Mixed Subtypes + - B Lymphoblastic Leukemia/Lymphoma With Hyperdiploidy + - Malignant Peripheral Nerve Sheath Tumor, NOS + - Hemangiosarcoma + - Paraganglioma, NOS + - Medulloblastoma, Nodular/Desmoplastic With Anaplastic/Large Cell Features, Non-WNT/Non-SHH; WHO Grade 4 + - Signet Ring Cell Carcinoma + - Spindle Cell Melanoma, NOS + - Lobular Adenocarcinoma + - Undiagnosed Spindle Cell Tumor + - Pilocytic Astrocytoma, WHO Grade 1, KIAA1549-BRAF Fusion + - Meningioma + - Hepatosplenic T-Cell Lymphoma, Precursor Cell Lymphoblastic Leukemia, NOS + - Mesenchymal Chondrosarcoma + - Anaplastic Ganglioglioma + - Osteosarcoma, NOS + - Oligoastrocytoma, NOS, Glioneuronal And Neuronal Tumors, Glioneuronal And Neuronal Tumors, NOS Or NEC + - Ependymoma WHO Grade 3 - Lung Adenocarcinoma, NOS - - Acute Myeloid Leukemia, T(16;16)(P 13;Q 11) - - Ependymoma, NOS, Medulloblastoma, Medulloblastoma, Non-WNT/Non-SHH - - Subcutaneous Panniculitis-Like T-Cell Lymphoma - - Chondrosarcoma, NOS - - Non-Germinomatous Germ Cell Tumor - - Dysembryoplastic Neuroepithelial Tumor, Angiocentric Glioma, Low-Grade Glioma - - Neuroepithelial Tumor - - Serous Carcinoma, NOS - - CNS Embryonal Tumor, NOS, CNS Embryonal Tumor, NOS Or NEC, Other CNS Embryonal Tumors - - Sertoli-Leydig Cell Tumor, Poorly Differentiated - - Solid Pseudopapillary Tumor Of Ovary - - Rhabdomyosarcoma - - Astrocytoma, NOS, Diffuse Pediatric-Type High-Grade Glioma, H3-Wildtype And IDH-Wildtype, High-Grade Glioma - - Extra Adrenal Paraganglioma - - Melanoma In Situ - - Tumor Cells, Malignant, Other, Pineal Parenchymal Tumor Of Intermediate Differentiation - - Glioma, Malignant, Astrocytoma, IDH-Mutant, Low-Grade Glioma - - Pituitary Adenoma, NOS - - Neoplasm, Uncertain Whether Benign Or Malignant, CNS Germ Cell Tumors, CNS Germinoma - - Basaloid Squamous Cell Carcinoma - - Embryonal Carcinoma, NOS - - Mixed Germ Cell Tumor - - Sertoli Cell Tumor, NOS - - Tumor Cells, Benign - - Pineoblastoma, CNS Germ Cell Tumors, CNS Germinoma - - Periosteal Osteosarcoma - - Lobular And Ductal Carcinoma + - Lymphoproliferative Disorder, NOS + - Atypical Lymphoid Infiltrate + - Medulloblastoma, NOS, Medulloblastoma, SHH-Activated And TP53-Wildtype + - Genital Rhabdomyoma + - Chondroblastic Osteosarcoma + - Neuroepithelioma, NOS + - Malignant Epithelioid And Myxoid Neoplasm + - Pancreatoblastoma + - Nephroblastoma (Wilms Tumor) + - Malignant Glioma + - Ewing Sarcoma + - Atypical Smooth Muscle Neoplasm + - Acute Myelomonocytic Leukemia, NOS + - Neoplasm, Uncertain Whether Benign Or Malignant, Low-Grade Glioma, Pilocytic Astrocytoma + - Epithelial Tumor, Benign + - Favor Teratoma + - Malignant Neoplasm Of Prostate + - Non-Clear Cell Renal Cell Carcinoma + - Meningioma, NOS, Embryonal Tumor With Multilayered Rosettes, NOS, Other CNS Embryonal Tumors + - Melanotic Schwannoma, Other + - Medulloblastoma, NOS, Medulloblastoma, WNT-Activated - Carcinosarcoma NOS - - Unknown - - Thymic Carcinoma, NOS - - Pleomorphic Rhabdomyosarcoma, Adult Type + - Plasmacytoma, Extramedullary + - Infantile Fibrosarcoma + - Glioma, Malignant, High-Grade Glioma, High-Grade Glioma, NOS Or NEC + - CNS Primative Neuroectodermal Tumor (PNET) + - Infiltrating duct carcinoma, NOS + - Precursor B-Cell Lymphoblastic Leukemia + - Squamous Cell Carcinoma In Situ, NOS + - Acute Myeloid Leukemia, T(16;16)(P 13;Q 11) - Papillary Transitional Cell Carcinoma - - Ependymoma, NOS, Posterior Fossa Ependymoma, Group PFA - - Ependymoma, NOS, Medulloblastoma, Medulloblastoma, NOS Or NEC - - Malignant Rhabdoid Tumor - - Medulloblastoma, NOS, Medulloblastoma, WNT-Activated + - Atypical Teratoid/Rhabdoid Tumor + - Low-Grade Glioneuronal, Neuronal Tumor + - Combined Small Cell-Adenocarcinoma + - Hepatocellular Carcinoma, NOS + - Spindle Cell Carcinoma, NOS + - Carcinoma, Diffuse Type + - Lentiginous Melanocytic Nevus + - Glioma, Malignant, Embryonal Tumor With Multilayered Rosettes, C19MC Altered, Other CNS Embryonal Tumors + - Solitary Fibrous Tumor, NOS + - Glioma, Malignant, Medulloblastoma, Medulloblastoma, Non-WNT/Non-SHH + - Granulosa Cell Tumor, Malignant + - Ganglioneuroma, Maturing Type, Favorable Histology + - Invasive Lobular Carcinoma + - Ganglioglioma, NOS, Other, Other CNS Tumor, NOS Or NEC + - Bland Myofibroblastic Proliferation With Associated Florid Lymphoplasmacytic Inflammation + - Medulloblastoma + - Hepatoblastoma + - Low Grade Glial/ Glioneuronal Tumor + - Atypical Teratoid Rhabdoid Tumor, CNS WHO Grade 4 + - Oligoastrocytoma, NOS, Other, Other CNS Tumor, NOS Or NEC + - Diffuse Glioma, Favor High Grade + - Reactive Connective Tissue + - Medulloblastoma, NOS, Medulloblastoma, SHH-Activated And TP53-Mutant - Tumor Cells, Malignant, Medulloblastoma, Medulloblastoma, NOS Or NEC - - Ganglioneuroma, Other, Schwannoma - - Lymphangioma, NOS - - Neoplasm, Malignant, High-Grade Glioma, High-Grade Glioma, NOS Or NEC - - Malignant Peripheral Nerve Sheath Tumor With Rhabdomyoblastic Differentiation - - Neoplasm, Uncertain Whether Benign Or Malignant, Medulloblastoma, Medulloblastoma, Group 4 - - Glioblastoma, NOS, High-Grade Glioma, High-Grade Glioma, NOS Or NEC - - Lymphoma, NOS - - Precursor B-Cell Lymphoblastic Leukemia - - Inflammatory Carcinoma - - Neoplasm, Malignant, Diffuse Pediatric-Type High-Grade Glioma, H3-Wildtype And IDH-Wildtype, High-Grade Glioma - - Solid Pseudopapillary Neoplasm Of Pancreas - - Squamous Cell Carcinoma, NOS + - Glioma, Malignant, Malignant Peripheral Nerve Sheath Tumor, NOS + - Melanoma, NOS + - Malignant Melanocytic Neoplasm + - Chronic Myelogenous Leukemia, BCR/ABL Positive + - Vascular Lesion, Consistent With Hemangioma + - Small Cell Neuroendocrine Carcinoma + - Medullary Carcinoma + - Anaplastic Astrocytoma, IDH-Wildtype, Glioblastoma, IDH Wildtype + - Rhabdomyosarcoma, Embryonal Subtype + - Medulloblastoma By Morphology, NON-WNT By Immunohistochemistry + - Glioma, Malignant, Astrocytoma, IDH-Mutant, High-Grade Glioma + - Ganglioglioma, NOS + - Dysembryoplastic Neuroepithelial Tumor, Angiocentric Glioma, Low-Grade Glioma + - Neoplasm, Uncertain Whether Benign Or Malignant, Low-Grade Glioma, Low-Grade Glioma, NOS Or NEC + - Angiomatoid Fibrous Histiocytoma + - Micropapillary Carcinoma, NOS + - Infiltrating Lobular Carcinoma, NOS + - Gastrointestinal Stromal Tumor + - Desmoplastic Nodular Medulloblastoma, Medulloblastoma, Medulloblastoma, Group 4 + - Craniopharyngioma + - Sertoli-Leydig Cell Tumor, Intermediate Differentiation, With Heterologous Elements + - Acute Myeloid Leukemia, Inv(16)(P13;Q22) + - Subependymoma + - Gliomatosis Cerebri + - Infiltrating lobular carcinoma, NOS + - Schwannoma, NOS + - Oligodendroglioma, NOS, Low-Grade Glioma, Low-Grade Glioma, NOS Or NEC + - Dysplasia + - Malignant Rhabdoid Tumor + - Blue Nevus, Malignant + - Adenocarcinoma, Pancreatobiliary Type + - Ependymoma, NOS, Choroid Plexus Tumors, Choroid Plexus Papilloma + - Ganglioneuroblastoma, Nodular Type + - Granulosa Cell Tumor, Juvenile + - Juvenile Granulosa Cell Tumor + - Chronic Myeloid Leukemia, BCR-ABL1-Positive + - Head & Neck Squamous Cell Carcinoma + - Astrocytoma, NOS, Low-Grade Glioma, Subependymal Giant Cell Astrocytoma + - Medulloblastoma, SHH-Activated And TP53-Wildtype + - Ganglioglioma, NOS, Ependymoma, Supratentorial Ependymoma, NOS Or NEC + - Intraductal Papillary Mucinous Neoplasm With An Associated Invasive Carcinoma + - Adrenal Cortical Adenoma, NOS + - Adenocarcinoma, Pancreatobiliary Type, Pancreatobiliary-Type Carcinoma + - Lipoblastomatosis + - Central Neurocytoma, Glioneuronal And Neuronal Tumors + - Control + - HHV8 Positive Diffuse Large B-Cell Lymphoma + - Pilocytic Astrocytoma, Low-Grade Glioma, Pleomorphic Xanthoastrocytoma + - Neoplasm, Uncertain Whether Benign Or Malignant, Medulloblastoma, Medulloblastoma, Group 4 + - Large Cell Medulloblastoma + - B Lymphoblastic Leukemia/Lymphoma With T(12;21)(P13;Q22); TEL-AML1 (ETV6-RUNX1) + - Central Osteosarcoma, NOS + - Chordoma + - Pilocytic Astrocytoma, Diffuse Leptomeningeal Glioneuronal Tumor, Glioneuronal And Neuronal Tumors + - Pilocytic Astrocytoma, Low-Grade Glioma, Low-Grade Glioma, NOS Or NEC + - Dermatofibrosarcoma Protuberans, Fibrosarcomatous + - Neuroendocrine Carcinoma, NOS + - Glioma, Malignant, Diffuse Pediatric-Type High-Grade Glioma, H3-Wildtype And IDH-Wildtype, High-Grade Glioma + - Oligodendroglioma, NOS + - Acute Monoblastic Leukemia + - Glioma, Malignant, Low-Grade Glioma, Polymorphous Low-Grade Neuroepithelial Tumor Of The Young + - Neoplasm + - Medulloepithelioma, NOS + - Oligodendroglioma, NOS, High-Grade Glioma, Oligodendroglioma, IDH-Mutant, And 1p/19q-Codeleted + - Not Reported + - Aggressive Fibromatosis + - Acute Myeloid Leukemia With Myelodysplasia-Related Changes + - Langerhans Cell Histiocytosis, Disseminated + - Glioma, Malignant, Low-Grade Glioma, Pilocytic Astrocytoma + - Oligoastrocytoma, NOS + - Undifferentiated Nasopharyngeal Carcinoma + - Small Cell Carcinoma, NOS + - Chordoma, NOS, Chordoma (Including Poorly Differentiated Chordoma), Other + - Mesothelioma, Biphasic, Malignant, B Lymphoblastic Leukemia/Lymphoma, NOS + - Central Neurocytoma, Low-Grade Glioma, Subependymal Giant Cell Astrocytoma + - Undifferentiated Small Round Cell Sarcoma + - Rhabdomyoma, NOS + - Glioblastoma, IDH Wildtype + - Neoplasm, Malignant, Astrocytoma, IDH-Mutant, Low-Grade Glioma + - Therapy Related Myeloid Neoplasm + - Acute Myeloid Leukemia, NOS + - Malignant Tumor, Spindle Cell Type, CNS Sarcoma, CNS Sarcoma, NOS Or NEC + - Leydig Cell Tumor, Benign + - Myelodysplastic Syndrome With Single Lineage Dysplasia + - Germinoma, CNS Germ Cell Tumors, CNS Germinoma + - Glial Tumor + - Synovial Sarcoma, Spindle Cell + - Spindle Cell Melanoma, Type B + - Familial Adenomatous Polyposis + - Giant Cell Glioblastoma - Teratocarcinoma - - Papillary Urothelial Carcinoma, Non-Invasive - - Meningioangiomatosis - - High-Grade Neuroepithelial Tumor - - Mixed Germ Cell Tumor, CNS Germ Cell Tumors, CNS Germinoma - - Neoplasm, Benign - - Atypical Teratoid-Rhabdoid Tumor, CNS WHO Grade 4 - - Acute Myelomonocytic Leukemia, NOS - - Subependymoma - - Rhabdomyosarcoma, Embryonal Subtype Is Favored - - Schawannoma - - Therapy-Related Myeloid Neoplasms - - Papillary Carcinoma, NOS - - Infantile Fibrosarcoma - - Sertoli Leydig Cell Tumor - - Central Primitive Neuroectodermal Tumor - - Medulloblastoma, Group 3 Subtype (WHO Grade 4) - - Choroid Plexus Carcinoma, WHO Grade 3 - - Papillary Carcinoma, Columnar Cell - - Yolk Sac Tumor, NOS, CNS Germ Cell Tumors, CNS Non-Germinomatous Germ Cell Tumor - - Ependymoma WHO Grade 3 - - Neuroepithelial Tumor With Glioneuronal-Like Features - - Sex Cord Stromal Tumor NOS - - Sex Cord-Gonadal Stromal Tumor, NOS - - Spindle Cell Sarcoma + - Adenoma, NOS - Acral Lentiginous Melanoma, Malignant - - Chondroid Chordoma - - Unknown, To Be Completed Later, Medulloblastoma, Medulloblastoma, Non-WNT/Non-SHH - - Glioblastoma, NOS - - Embryonal Tumor - - Paratesticular Rhabdomyosarcoma With Diffuse Anaplasia - - Olfactory Neurocytoma - - Astrocytoma, Benign - - Mixed Germ Cell Tumor, Myelodysplastic Syndrome With Excess Blasts - - Large Cell Medulloblastoma - - Adenocarcinoma In Situ, Non-Mucinous - - Rasmussen Encephalitis - - Acute Myeloid Leukemia, NOS, Myeloproliferative Neoplasm, Unclassifiable - - Epithelioid Cell Melanoma - - Craniopharyngioma, NOS, Adamantinomatous Craniopharyngioma - - Giant Cell Tumor Of Soft Parts, NOS - - Undifferentiated Leukaemia - - Neoplasm, Uncertain Whether Benign Or Malignant, Dysembryoplastic Neuroepithelial Tumor, Glioneuronal And Neuronal Tumors - - Follicular Carcinoma, Minimally Invasive - - Spindled And Epithelioid Tumor With Features Of Intracranial Mesenchymal Tumor - - Infiltrating Duct And Mucinous Carcinoma - - Cutaneous T-Cell Lymphoma, NOS - - Clear Cell Adenocarcinoma, NOS - - Diffuse Midline Glioma, H3 K27 Altered, WHO Grade 4 + - Carcinoma NOS + - Papillary Carcinoma, NOS + - Poorly Differentiated Neuroblastoma + - Solid Pseudopapillary Neoplasm Of Pancreas + - Nasopharyngeal Carcinoma + - Adenocarcinoma In Adenomatous Polyposis Coli + - Leiomyoma, NOS + - Embryonal Rhabdomyosarcoma, NOS + - Choroid Plexus Papilloma, NOS, Other CNS Embryonal Tumors, Pineoblastoma + - Tumor Cells, Benign + - Marginal Zone B-Cell Lymphoma, NOS + - Tumor Cells, Malignant, Other, Pineal Parenchymal Tumor Of Intermediate Differentiation + - Pinealoma + - Atypical Teratoid/Rhabdoid Tumor, INI1/SMARCB1-Altered, WHO Grade 4 - Metastatic Signet Ring Cell Carcinoma - - Micropapillary Carcinoma, NOS - - Subependymal Giant Cell Astrocytoma, Glioneuronal And Neuronal Tumors, Glioneuronal And Neuronal Tumors, NOS Or NEC - - Desmoplastic Small Round Cell Tumor - - Mixed Phenotype Acute Leukemia With T(V;11q23); MLL Rearranged - - B Lymphoblastic Leukemia/Lymphoma With T(1;19)(Q23;P13.3); E2A-PBX1 (TCF3-PBX1) - - Dysembryoplastic Neuroepithelial Tumor, Low-Grade Glioma, Low-Grade Glioma, NOS Or NEC - - Glioma, Malignant + - Astrocytoma + - Desmoplastic Infantile Astrocytoma + - Malignant Sarcoma With DICER1 Mutation, Favor Primary Intracranial Sarcoma, DICER1 Mutant + - B Lymphoblastic Leukemia/Lymphoma With Hypodiploidy + - Colon Adenocarcinoma + - Ependymoma, NOS, Supratentorial Ependymoma, NOS Or NEC - Proliferative Dermal Lesion In Congenital Nevus - - Pinealoma - - Transitional Cell Carcinoma - - Adenosarcoma - - Medulloblastoma, NOS, Medulloblastoma, Group 4 - - B Lymphoblastic Leukemia/Lymphoma With T(12;21)(P13;Q22); TEL-AML1 (ETV6-RUNX1) - - Meningothelial Meningioma, Meningioma, Other - - Germinoma, CNS Germ Cell Tumors, CNS Germinoma - - Leiomyosarcoma, NOS - - Low Grade Glial Neoplasm - - Adamantinomatous Craniopharyngioma, CNS WHO Grade 1 - - Infiltrating Ductal Carcinoma - - Acute Myeloid Leukemia, T(8;21)(Q22;Q22) - - Adenosquamous Carcinoma - - Anaplastic Large Cell Lymphoma, ALK Positive - - Ganglioglioma, NOS, Malignant Peripheral Nerve Sheath Tumor, NOS - - Schwannoma, NOS, Other - - Mesenchymal Lesion - - Granulosa Cell Tumor, Juvenile - - Poorly Differentiated, Intermediate Mitotic-Karyorrhectic Index - - Nuclear Protein In Testis (NUT)-Associated Carcinoma - - Neoplasm, Uncertain Whether Benign Or Malignant, Astrocytoma, IDH-Mutant, Low-Grade Glioma - - Sex Cord-Gonadal Stromal Tumor, Incompletely Differentiated - - Meningioma, NOS, Embryonal Tumor With Multilayered Rosettes, NOS, Other CNS Embryonal Tumors - - Chordoma, NOS - - Carcinoma In Situ, NOS - - Acute Megakaryoblastic Leukemia - - Oligoastrocytoma, NOS, Other, Other CNS Tumor, NOS Or NEC - - Kidney Clear Cell Renal Carcinoma - - Medulloblastoma, Classic Histologic Type, CNS WHO Grade 4 + - Neoplasm, Malignant, Medulloblastoma, Medulloblastoma, WNT-Activated + - Arteriovenous Malformation + - Glioma, Malignant + - Acinar Cell Carcinoma + - Spinal Ependymoma, Histologically Low Grade (CNS WHO Grade 2) + - Leukemia, NOS + - Hemangioblastoma, Other + - High-Grade Serous Carcinoma + - Medulloblastoma, NOS, Medulloblastoma, Group 3 + - Schwannian Stroma Poor Peripheral Neuroblastic Tumor, Consistent With Neuroblastoma + - Acute Myeloid Leukemia With Mutated CEBPA + - Parosteal Osteosarcoma + - Epithelioid Mesothelioma, Malignant + - Meningioma, NOS + - Neoplasm, Uncertain Whether Benign Or Malignant, ATRT-SHH, Atypical Teratoid/Rhabdoid Tumor + - Choriocarcinoma Combined With Other Germ Cell Elements + - Brain Tumor, Low Grade Glioma + - Ganglioglioma, NOS, Diffuse Astrocytoma, MYB- Or MYBL1-Altered, Low-Grade Glioma + - Embryonal Tumor With Multilayered Rosettes C19MC-Altered + - Neoplasm, Malignant, Uncertain Whether Primary Or Metastatic + - Desmoplastic Small Round Cell Tumor + - Embryonal Rhabdomyosarcoma + - Langerhans Cell Histiocytosis + - Glial Neoplasm Showing High-Grade Features + - Oligodendroglioma - Malignant Melanoma, NOS + - Myxopapillary Ependymoma, Ependymoma + - Medulloblastoma, NOS, Medulloblastoma, NOS Or NEC + - Neoplasm, Malignant, CNS Embryonal Tumor, NOS Or NEC, Other CNS Embryonal Tumors + - Adenocarcinoma + - B Lymphoblastic Leukemia/Lymphoma With T(9;22)(Q34;Q11.2); BCR-ABL1 + - Hemangioendothelioma, Malignant + - Choroid Plexus Neoplasm + - Craniopharyngioma, Adamantinomatous, Adamantinomatous Craniopharyngioma + - Pinealoblastoma + - Large Cell Medulloblastoma, Embryonal Tumor With Multilayered Rosettes, NOS, Other CNS Embryonal Tumors + - Spindle Cell Sarcoma + - Gliosarcoma + - Central Primitive Neuroectodermal Tumor + - Astrocytoma, IDH-Mutant, CNS WHO Grade 3 + - Astrocytoma, Benign + - Pleomorphic Rhabdomyosarcoma, Adult Type + - Myeloid Sarcoma + - Glioma, Malignant, Other, Other Low-Grade B-Cell Lymphomas Of The CNS + - Ganglioneuroma + - Neoplasm, Malignant, High-Grade Glioma, High-Grade Glioma, NOS Or NEC + - Clear Cell Renal Cell Carcinoma + - Ependymoma, NOS, Atypical Meningioma + - Oligodendroglioma, NOS, Other, Other CNS Tumor, NOS Or NEC + - Malignant Peripheral Nerve Sheath Tumor + - Glioma, Malignant, Diffuse Midline Glioma, H3 K27-Altered, High-Grade Glioma + - Sertoli-Leydig Cell Tumor Of Intermediate Differentiation, NOS + - Desmoplastic Nodular Medulloblastoma + - Papillary Microcarcinoma + - Craniopharyngioma, NOS + - Low Grade Glial Neoplasm + - Leiomyosarcoma, NOS + - Follicular Adenocarcinoma, NOS Req: true Term: - Origin: caDSR @@ -5024,13 +5016,14 @@ PropDefinitions: - G2 - G3 - G4 - - GX - GB + - GX - High Grade - Intermediate Grade - Low Grade - - Unknown + - Not Applicable - Not Reported + - Unknown Term: - Origin: caDSR Original Source: DSS @@ -5040,6 +5033,7 @@ PropDefinitions: tumor_stage_clinical_t: Desc: Extent of the primary cancer based on evidence obtained from clinical assessment parameters determined prior to treatment. Enum: + - Not Reported - T0 - T1 - T1a @@ -5068,14 +5062,14 @@ PropDefinitions: - T4c - T4d - T4e - - TX + - T5 - Ta - Tis - Tis (DCIS) - Tis (LCIS) - Tis (Paget's) + - TX - Unknown - - Not Reported Term: - Origin: caDSR Original Source: TCGA @@ -5161,7 +5155,7 @@ PropDefinitions: Version: '2.00' title: Desc: The abbreviation that represents an affix occurring at or before the beginning of an individual's name. - Type: String + Type: string Term: - Origin: caDSR Original Source: NCI Std @@ -5803,33 +5797,21 @@ PropDefinitions: Version: '1.00' response: Desc: Text term that describes the patient's final outcome after the treatment was administered. - Type: string - Term: - - Origin: caDSR - Code: "13383448" - Value: Disease Response Assessment Outcome - Version: '1.00' - treatment_outcome: - Desc: Text term that describes the patient's final outcome after the treatment was administered Enum: - - Complete Remission - - Minor Response - - Mixed Response + - Complete Response - No Evidence of Disease - - Non-Response + - No Response - Not Applicable - - Not Done - Not Evaluable - Not Reported - Partial Response + - Persistent Disease - Progressive Disease - Stable Disease - Unknown - - Very Good Partial Response Term: - Origin: caDSR - Original Source: TCGA - Code: '13383448' + Code: "13383448" Value: Disease Response Assessment Outcome Version: '1.00' treatment_type: @@ -10876,14 +10858,93 @@ PropDefinitions: Req: 'No' institution: Desc: TBD - Type: String + Type: string Req: Preferred program_short_name: Desc: An acronym or abbreviated form of the title of a broad framework of goals under which related projects or other research activities are grouped. Example - CPTAC - Type: String + Type: string Term: - Origin: caDSR Original Source: DSS Code: "11459801" Value: Program Short Name Text - Version: '1.00' \ No newline at end of file + Version: '1.00' + # proteomic + aliquot_id: + Desc: One or more characters used to identify a portion of a sample. + Req: true + Key: true + Type: string + Term: + - Origin: caDSR + Original Source: CRDC + Code: "15105438" + Value: Specimen Aliquot Identifier + Version: '1.00' + analytical_fractions: + Desc: The portion of a specimen that was isolated from the whole and collected via a fractionation process to be subjected to further analysis. + Req: true + Enum: + - Acetylome + - Glycoproteome + - Lipidome + - Metabolome + - Phosphoproteome + - Proteome + - Ubiquitylome + Term: + - Origin: caDSR + Original Source: CRDC + Code: "15112968" + Value: Laboratory Procedure Proteomic Profiling Analytical Fraction Type + Version: '1.00' + instrument_make: + Desc: The words that describe an entity that produces finished goods used to perform a diagnostic, therapeutic or research activity. + Req: true + Type: string + Term: + - Origin: caDSR + Original Source: CRDC + Code: "2866141" + Value: Equipment Manufacturer Name Text + Version: '1.00' + proteomic_instrument_model: + Desc: The words that describe the style or design of an entity"s finished goods used to perform a diagnostic, therapeutic or research activity. + Type: string + Term: + - Origin: caDSR + Original Source: CRDC + Code: "2413274" + Value: Equipment Manufacturer Model Name Text + Version: '2.10' + proteomic_design_description: + Desc: The description of the analysis of proteins using a combination of techniques to quantify and to characterize proteins. + Req: true + Type: string + Term: + - Origin: caDSR + Original Source: CRDC + Code: "15089939" + Value: Research Activity Proteomics Study Design Description Text + Version: '1.00' + # version + data_version_id: + Desc: A static data version ID that is used primarily to assist in data loading. This ID will be used as a reference to update the existing data_version node instead of creating a new one with each version change. + Type: string + Key: true + Req: true + data_version: + Desc: The version of the data that has been loaded. This should be similar to semantic versioning format (major.minor.patch). + Type: string + Req: true + datetime: + Desc: An ISO8601 formatted datetime that records when the dataset was last edited. + Type: string + Req: true + model_version: + Desc: The version of the model used to load the data + Type: string + Req: true + description: + Desc: Any additional information about the dataset that might be relevant formatted as a short sentence or paragraph + Type: string \ No newline at end of file diff --git a/model-desc/cds-model.yml b/model-desc/cds-model.yml index 8a305c8..6293989 100644 --- a/model-desc/cds-model.yml +++ b/model-desc/cds-model.yml @@ -1,5 +1,5 @@ Handle: CDS -Version: v4.0.4 +Version: v5.0.0 Nodes: program: Desc: "Program in the Cancer Data Service refer to a broad framework of goals under which related projects or other research activities are grouped. Example - Clinical Proteomic Tumor Analysis Consortium (CPTAC)" @@ -132,7 +132,6 @@ Nodes: Props: - treatment_id - treatment_type - - treatment_outcome - days_to_treatment - therapeutic_agents - response @@ -181,7 +180,7 @@ Nodes: #- file_access genomic_info: - Desc: "In CDS genomic info refers to the sequencing methodsm techniques and equipment." + Desc: "In CDS genomic info refers to the sequencing methods techniques and equipment." Tags: Category: data_file Assignment: core @@ -228,58 +227,22 @@ Nodes: - image_modality - imaging_equipment_manufacturer - imaging_equipment_model - - imaging_sofware + - imaging_software - imaging_protocol - organ_or_tissue - - performed_imaging_study_description - - performed_imaging_study_admittingDiagnosisCode - - performed_imaging_study_nonAcquisitionModalitiesInStudyCode - - performed_imaging_study_lossyImageCompressionIndicator - - performed_imaging_study_summary - - performed_imaging_study_primaryAnatomicSiteCode - - performed_imaging_study_acquisitionTypeCode - - performed_imaging_study_cardiacSynchronizationTechniqueCode - - performed_imaging_study_dataCollectionDiameter - - performed_imaging_study_respiratoryMotionTechniqueCode - - performed_imaging_study_bodyPositionCode - performed_imaging_study_typeCode - - performed_imaging_study_algorithmCode - - performed_imaging_study_reconstructionFieldOfViewHeight - - performed_imaging_study_reconstructionFieldOfViewWidth - - performed_imaging_study_reconstructionDiameter - - performed_imaging_study_sliceThickness - - performed_imaging_study_reconstructionInterval - longitudinal_temporal_event_type - longitudinal_temporal_event_offset - - CTAquisitionProtocolElement_singleCollimationWidth - - CTAquisitionProtocolElement_totalCollimationWidth - - CTAquisitionProtocolElement_gantryDetectorTilt - - CTAquisitionProtocolElement_spiralPitchFactor - - CTAquisitionProtocolElement_ctdiVol - - CTAquisitionProtocolElement_ctdiPhantomTypeCode - - CTAquisitionProtocolElement_kVp - - CTAquisitionProtocolElement_exposureModulationType_Code - - CTImageReconstructionProtocolElement_convolutionKernel - - CTImageReconstructionProtocolElement_convolutionKernelGroupCode - - MRImageAcquisitionProtocolElement_echoPulseSequenceCategoryCode - - MRImageAcquisitionProtocolElement_diffusionBValue - - MRImageAcquisitionProtocolElement_diffusionDirectionalityCode - - MRImageAcquisitionProtocolElement_magneticFieldStrength - - MRImageAcquisitionProtocolElement_resonantNucleusCode - - MRImageAcquisitionProtocolElement_acquisitionContrastCode - - MRImageAcquisitionProtocolElement_inversionRecoveryIndicator - - MRImageAcquisitionProtocolElement_pulseSequenceName - - MRImageAcquisitionProtocolElement_multipleSpinEchoIndicator - - MRImageAcquisitionProtocolElement_phaseContrastIndicator - - MRImageAcquisitionProtocolElement_timeOfFlightContrastIndicator - - MRImageAcquisitionProtocolElement_arterialSpinLabelingContrastCode - - MRImageAcquisitionProtocolElement_steadyStatePulseSequenceCode - - MRImageAcquisitionProtocolElement_echoPlanarPulseSequenceIndicator - - MRImageAcquisitionProtocolElement_saturationRecoveryIndicator - - MRImageAcquisitionProtocolElement_spectrallySelectedSuppressionCode - - MRImageReconstructionProtocolElement_complexImageComponentCode - - PETImagingAcquisitionProtocolElement_gantryDetectorTilt - - Radiopharmaceutical_radionuclideCode + + MultiplexMicroscopy: + Tags: + Category: data_file + Assignment: core + Class: primary + Template: 'Yes' + Desc: "non DICOM standard multiplex images to analyze cellular interactions and spatial context in biological samples" + Props: + - MultiplexMicroscopy_id - acquisition_method_type - tumor_tissue_type - tissue_fixative @@ -323,7 +286,139 @@ Nodes: - oligo_barcode_lower_strand - dilution - concentration - - crdc_id + + NonDICOMCTimages: + Tags: + Category: data_file + Assignment: core + Class: primary + Template: 'Yes' + Desc: "non DICOM standard computed tomography images" + Props: + - NonDICOMCTimages_id + - CTAquisitionProtocolElement_singleCollimationWidth + - CTAquisitionProtocolElement_totalCollimationWidth + - CTAquisitionProtocolElement_gantryDetectorTilt + - CTAquisitionProtocolElement_spiralPitchFactor + - CTAquisitionProtocolElement_ctdiVol + - CTAquisitionProtocolElement_ctdiPhantomTypeCode + - CTAquisitionProtocolElement_kVp + - CTAquisitionProtocolElement_exposureModulationType_Code + - CTImageReconstructionProtocolElement_convolutionKernel + - CTImageReconstructionProtocolElement_convolutionKernelGroupCode + + NonDICOMMRimages: + Tags: + Category: data_file + Assignment: core + Class: primary + Template: 'Yes' + Desc: "non DICOM standard magnetic resonance images" + Props: + - NonDICOMMRimages_id + - MRImageAcquisitionProtocolElement_echoPulseSequenceCategoryCode + - MRImageAcquisitionProtocolElement_diffusionBValue + - MRImageAcquisitionProtocolElement_diffusionDirectionalityCode + - MRImageAcquisitionProtocolElement_magneticFieldStrength + - MRImageAcquisitionProtocolElement_resonantNucleusCode + - MRImageAcquisitionProtocolElement_acquisitionContrastCode + - MRImageAcquisitionProtocolElement_inversionRecoveryIndicator + - MRImageAcquisitionProtocolElement_pulseSequenceName + - MRImageAcquisitionProtocolElement_multipleSpinEchoIndicator + - MRImageAcquisitionProtocolElement_phaseContrastIndicator + - MRImageAcquisitionProtocolElement_timeOfFlightContrastIndicator + - MRImageAcquisitionProtocolElement_arterialSpinLabelingContrastCode + - MRImageAcquisitionProtocolElement_steadyStatePulseSequenceCode + - MRImageAcquisitionProtocolElement_echoPlanarPulseSequenceIndicator + - MRImageAcquisitionProtocolElement_saturationRecoveryIndicator + - MRImageAcquisitionProtocolElement_spectrallySelectedSuppressionCode + - MRImageReconstructionProtocolElement_complexImageComponentCode + + NonDICOMpathologyImages: + Tags: + Category: data_file + Assignment: core + Class: primary + Template: 'Yes' + Desc: "non DICOM standard used for the study of examination of tissue samples and histological features" + Props: + - NonDICOMpathologyImages_id + - acquisition_method_type + - tumor_tissue_type + - tissue_fixative + - embedding_medium + - staining_method + - objective + - nominal_magnification + - immersion + - lens_numerical_aperture + + NonDICOMPETimages: + Tags: + Category: data_file + Assignment: core + Class: primary + Template: 'Yes' + Desc: "non DICOM standard positron emission tomography used to study metabolic processes in tissues" + Props: + - NonDICOMPETimages_id + - PETImagingAcquisitionProtocolElement_gantryDetectorTilt + - Radiopharmaceutical_radionuclideCode + + NonDICOMradiologyAllModalities: + Tags: + Category: data_file + Assignment: core + Class: primary + Template: 'Yes' + Desc: "non DICOM standard radiology images" + Props: + - NonDICOMradiologyAllModalities_id + - performed_imaging_study_description + - performed_imaging_study_admittingDiagnosisCode + - performed_imaging_study_nonAcquisitionModalitiesInStudyCode + - performed_imaging_study_lossyImageCompressionIndicator + - performed_imaging_study_summary + - performed_imaging_study_primaryAnatomicSiteCode + - performed_imaging_study_acquisitionTypeCode + - performed_imaging_study_cardiacSynchronizationTechniqueCode + - performed_imaging_study_dataCollectionDiameter + - performed_imaging_study_respiratoryMotionTechniqueCode + - performed_imaging_study_bodyPositionCode + - performed_imaging_study_algorithmCode + - performed_imaging_study_reconstructionFieldOfViewHeight + - performed_imaging_study_reconstructionFieldOfViewWidth + - performed_imaging_study_reconstructionDiameter + - performed_imaging_study_sliceThickness + - performed_imaging_study_reconstructionInterval + + proteomic: + Tags: + Category: data_file + Assignment: core + Class: primary + Template: 'Yes' + Desc: "proteo-genomic data submitted to CDS" + Props: + - aliquot_id + - analytical_fractions + - instrument_make + - proteomic_instrument_model + - proteomic_design_description + + version: + Tags: + Category: data_file + Assignment: core + Class: primary + Template: 'No' + Desc: "version of the data being uploaded for release" + Props: + - data_version_id + - data_version + - datetime + - model_version + - description Relationships: of_program: @@ -368,6 +463,25 @@ Relationships: - Src: image Dst: file Mul: one_to_one + - Src: proteomic + Dst: file + Mul: one_to_one + of_image: + Props: null + Mul: one_to_one + Ends: + - Src: MultiplexMicroscopy + Dst: image + - Src: NonDICOMCTimages + Dst: image + - Src: NonDICOMpathologyImages + Dst: image + - Src: NonDICOMMRimages + Dst: image + - Src: NonDICOMradiologyAllModalities + Dst: image + - Src: NonDICOMPETimages + Dst: image associated_with: Props: null Mul: many_to_one