diff --git a/docs/user-guide/examples/multiqc_report.html b/docs/user-guide/examples/multiqc_report.html index 02119aa9..10d1cdc9 100644 --- a/docs/user-guide/examples/multiqc_report.html +++ b/docs/user-guide/examples/multiqc_report.html @@ -23,7 +23,7 @@ MultiQC Report - + @@ -6570,12 +6570,12 @@

JavaScript Disabled

Report - generated on 2023-09-27, 16:21 EDT + generated on 2023-09-29, 10:36 EDT based on data in: - /lscratch/9160947/nxf.xw1mvGMrqF

+ /lscratch/9287459/nxf.4cTDokBeoX

@@ -6627,7 +6627,7 @@

General Statistics

-
Sample Name% Dups% GCM SeqsM Reads MappedFrag LengthNSCRSC
CTCF_ChIP_MEF_p20_1.aligned.filtered.dedup.bam.flagstat
32.9
CTCF_ChIP_MEF_p20_1.spp.out
135
1.73
2.84
CTCF_ChIP_MEF_p20_1.trimmed.fastq.gz
19.1%
44%
48.5
CTCF_ChIP_MEF_p20_2.aligned.filtered.dedup.bam.flagstat
13.6
CTCF_ChIP_MEF_p20_2.spp.out
110
3.39
2.45
CTCF_ChIP_MEF_p20_2.trimmed.fastq.gz
23.5%
51%
36.6
CTCF_ChIP_macrophage_p20_1.aligned.filtered.dedup.bam.flagstat
38.1
CTCF_ChIP_macrophage_p20_1.spp.out
130
1.51
2.66
CTCF_ChIP_macrophage_p20_1.trimmed.fastq.gz
19.3%
45%
59.8
CTCF_ChIP_macrophage_p20_2.aligned.filtered.dedup.bam.flagstat
11.3
CTCF_ChIP_macrophage_p20_2.spp.out
115
2.31
2.23
CTCF_ChIP_macrophage_p20_2.trimmed.fastq.gz
9.3%
45%
22.3
CTCF_ChIP_macrophage_p3_1.aligned.filtered.dedup.bam.flagstat
31.1
CTCF_ChIP_macrophage_p3_1.spp.out
135
1.53
2.65
CTCF_ChIP_macrophage_p3_1.trimmed.fastq.gz
17.2%
43%
50.2
CTCF_ChIP_macrophage_p3_2.aligned.filtered.dedup.bam.flagstat
16.0
CTCF_ChIP_macrophage_p3_2.spp.out
105
1.93
2.57
CTCF_ChIP_macrophage_p3_2.trimmed.fastq.gz
26.0%
51%
44.4
SRR3081748_1.fastq.gz
20.2%
45%
60.4
SRR3081749_1.fastq.gz
10.0%
45%
22.7
SRR3081750_1.fastq.gz
17.6%
44%
50.5
SRR3081751_1.fastq.gz
36.2%
51%
51.4
SRR3081752_1.fastq.gz
19.4%
44%
48.7
SRR3081753_1.fastq.gz
24.5%
51%
36.9
SRR3081772_1.fastq.gz
14.0%
39%
27.6
SRR3081773_1.fastq.gz
16.9%
39%
38.2
WCE_p20.aligned.filtered.dedup.bam.flagstat
27.6
WCE_p20.spp.out
0
1.01
1.00
WCE_p20.trimmed.fastq.gz
16.5%
39%
38.0
WCE_p3.aligned.filtered.dedup.bam.flagstat
20.9
WCE_p3.spp.out
145
1.01
1.10
WCE_p3.trimmed.fastq.gz
13.6%
39%
27.5
+ Sample Name% Dups% GCAverage Read LengthMedian Read Length% FailedM SeqsM ReadsM Reads Mapped% Reads MappedFrag LengthNSCRSCCTCF_ChIP_MEF_p20_1.aligned.filtered.dedup.bam.flagstat
32.9
32.9
100.0%
CTCF_ChIP_MEF_p20_1.spp.out
135
1.73
2.84
CTCF_ChIP_MEF_p20_1.trim.fastq.gz
19.1%
44%
49 bp
50 bp
9%
48.5
CTCF_ChIP_MEF_p20_2.aligned.filtered.dedup.bam.flagstat
13.6
13.6
100.0%
CTCF_ChIP_MEF_p20_2.spp.out
110
3.39
2.45
CTCF_ChIP_MEF_p20_2.trim.fastq.gz
23.5%
51%
49 bp
50 bp
9%
36.6
CTCF_ChIP_macrophage_p20_1.aligned.filtered.dedup.bam.flagstat
38.1
38.1
100.0%
CTCF_ChIP_macrophage_p20_1.spp.out
130
1.51
2.66
CTCF_ChIP_macrophage_p20_1.trim.fastq.gz
19.3%
45%
49 bp
50 bp
9%
59.8
CTCF_ChIP_macrophage_p20_2.aligned.filtered.dedup.bam.flagstat
11.3
11.3
100.0%
CTCF_ChIP_macrophage_p20_2.spp.out
115
2.31
2.23
CTCF_ChIP_macrophage_p20_2.trim.fastq.gz
9.3%
45%
49 bp
50 bp
9%
22.3
CTCF_ChIP_macrophage_p3_1.aligned.filtered.dedup.bam.flagstat
31.1
31.1
100.0%
CTCF_ChIP_macrophage_p3_1.spp.out
135
1.53
2.65
CTCF_ChIP_macrophage_p3_1.trim.fastq.gz
17.2%
43%
49 bp
50 bp
9%
50.2
CTCF_ChIP_macrophage_p3_2.aligned.filtered.dedup.bam.flagstat
16.0
16.0
100.0%
CTCF_ChIP_macrophage_p3_2.spp.out
105
1.93
2.57
CTCF_ChIP_macrophage_p3_2.trim.fastq.gz
26.0%
51%
49 bp
50 bp
9%
44.4
SRR3081748_1.fastq.gz
20.2%
45%
50 bp
50 bp
0%
60.4
SRR3081749_1.fastq.gz
10.0%
45%
50 bp
50 bp
0%
22.7
SRR3081750_1.fastq.gz
17.6%
44%
50 bp
50 bp
0%
50.5
SRR3081751_1.fastq.gz
36.2%
51%
50 bp
50 bp
9%
51.4
SRR3081752_1.fastq.gz
19.4%
44%
50 bp
50 bp
0%
48.7
SRR3081753_1.fastq.gz
24.5%
51%
50 bp
50 bp
0%
36.9
SRR3081772_1.fastq.gz
14.0%
39%
50 bp
50 bp
9%
27.6
SRR3081773_1.fastq.gz
16.9%
39%
50 bp
50 bp
9%
38.2
WCE_p20.aligned.filtered.dedup.bam.flagstat
27.6
27.6
100.0%
WCE_p20.spp.out
0
1.01
1.00
WCE_p20.trim.fastq.gz
16.5%
39%
49 bp
50 bp
18%
38.0
WCE_p3.aligned.filtered.dedup.bam.flagstat
20.9
20.9
100.0%
WCE_p3.spp.out
145
1.01
1.10
WCE_p3.trim.fastq.gz
13.6%
39%
49 bp
50 bp
18%
27.5
@@ -7084,7 +7084,7 @@

-
+
@@ -7105,7 +7105,7 @@

-
+
@@ -7126,7 +7126,7 @@

-
+
@@ -7147,7 +7147,7 @@

-
+
@@ -7164,7 +7164,7 @@

FastQC

-

FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

+

FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

@@ -7351,7 +7351,7 @@
- +