diff --git a/assets/slurm_header_biowulf.sh b/assets/slurm_header_biowulf.sh index f9a599e..7c21242 100644 --- a/assets/slurm_header_biowulf.sh +++ b/assets/slurm_header_biowulf.sh @@ -9,4 +9,4 @@ #SBATCH --output "log/slurm_%j.log" module load nextflow -NXF_SINGULARITY_CACHEDIR=/data/CCBR_Pipeliner/SIFS +NXF_SINGULARITY_CACHEDIR=/data/CCBR_Pipeliner/SIFs diff --git a/conf/biowulf.config b/conf/biowulf.config index 2f9fb5a..81de1e4 100644 --- a/conf/biowulf.config +++ b/conf/biowulf.config @@ -20,11 +20,11 @@ params { singularity { enabled = true autoMounts = true - cacheDir = "/data/CCBR_Pipeliner/SIFS" + cacheDir = "/data/CCBR_Pipeliner/SIFs" envWhitelist='https_proxy,http_proxy,ftp_proxy,DISPLAY,SLURM_JOBID,SINGULARITY_BINDPATH' } -env.SINGULARITY_CACHEDIR = "/data/CCBR_Pipeliner/SIFS" +env.SINGULARITY_CACHEDIR = "/data/CCBR_Pipeliner/SIFs" process.clusterOptions = ' --gres=lscratch:200 '