diff --git a/docker/logan_base/Dockerfile b/docker/logan_base/Dockerfile index a250c8c..181d2c1 100644 --- a/docker/logan_base/Dockerfile +++ b/docker/logan_base/Dockerfile @@ -203,6 +203,16 @@ RUN wget -O svaba_1.2.0 https://github.com/walaj/svaba/releases/download/v1.2.0/ ENV PATH="/opt2/svaba:$PATH" # LOFREQ +RUN git clone https://github.com/CSB5/lofreq \ + && cd /opt2/lofreq \ + && ./bootstrap \ + && ./configure --prefix=/opt2/lofreq/ \ + && make \ + && make install + +ENV PATH="/opt2/lofreq/bin:$PATH" + + RUN wget https://github.com/CSB5/lofreq/raw/master/dist/lofreq_star-2.1.5_linux-x86-64.tgz \ && tar -xzf lofreq_star-2.1.5_linux-x86-64.tgz \ && chmod a+x lofreq_star-2.1.5_linux-x86-64/bin/lofreq \ diff --git a/docker/logan_base/build.sh b/docker/logan_base/build.sh index efb12e3..055c87f 100644 --- a/docker/logan_base/build.sh +++ b/docker/logan_base/build.sh @@ -4,7 +4,7 @@ #docker buildx inspect upbeat_ganguly #docker buildx build --platform linux/amd64 -f Dockerfile -t dnousome/ccbr_logan_base:v0.3.0 -t dnousome/ccbr_logan_base:latest --push . -docker build --platform linux/amd64 --tag ccbr_logan_base:v0.3.3 -f Dockerfile . +docker build --platform linux/amd64 --tag ccbr_logan_base:v0.3.4 -f Dockerfile . docker tag ccbr_logan_base:v0.3.4 dnousome/ccbr_logan_base:v0.3.4 docker tag ccbr_logan_base:v0.3.4 dnousome/ccbr_logan_base