From c4cf4064d4ec02fbe97352d022d26535dde3e4af Mon Sep 17 00:00:00 2001 From: slsevilla Date: Fri, 29 Dec 2023 13:31:09 -0500 Subject: [PATCH 1/2] chore: increase time for kraken,bbmerge rules --- resources/cluster.json | 3 +++ 1 file changed, 3 insertions(+) diff --git a/resources/cluster.json b/resources/cluster.json index 053fd36..b22bfd6 100644 --- a/resources/cluster.json +++ b/resources/cluster.json @@ -11,6 +11,7 @@ }, "bbmerge": { "mem": "64g" + "time": "1-00:00:00" }, "fastqc": { "threads": "32", @@ -28,11 +29,13 @@ "cpus-per-task": "32", "gres": "lscratch:256", "mem": "110g" + "time": "1-00:00:00" }, "kraken_se": { "cpus-per-task": "32", "gres": "lscratch:256", "mem": "110g" + "time": "1-00:00:00" }, "pca": { "mem": "110g", From d5d56800686276c4e59ddfd363b0b445679cfb17 Mon Sep 17 00:00:00 2001 From: Kelly Sovacool Date: Fri, 29 Dec 2023 13:38:54 -0500 Subject: [PATCH 2/2] docs: update changelog for v2.5.9 --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 1f3aa34..105f84a 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,6 +1,7 @@ ## development version - Fix bugs that prevented single-end data from running through the pipeline. (#58, @kelly-sovacool) +- Increase wall time for kraken and bbmerge rules. (#68, @slsevilla) ## v2.5