From 7a4d45e635b20a8b76e51d09d674a990d2d4ee96 Mon Sep 17 00:00:00 2001 From: Kelly Sovacool Date: Fri, 1 Nov 2024 14:07:29 -0400 Subject: [PATCH 1/2] fix: upgrade multiqc docker with PYTHONPATH unset depends on https://github.com/CCBR/Dockers/pull/39 fixes #122 --- config/containers/images.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/config/containers/images.json b/config/containers/images.json index 68f2ddd..b4bcc4c 100644 --- a/config/containers/images.json +++ b/config/containers/images.json @@ -8,7 +8,7 @@ "fastqvalidator": "docker://nciccbr/ccbr_fastqvalidator:v0.1.0", "kraken": "docker://nciccbr/ccbr_kraken_v2.1.1:v0.0.1", "miniconda": "docker://continuumio/miniconda3:4.9.2", - "multiqc": "docker://nciccbr/ccbr_multiqc_1.15:v1", + "multiqc": "docker://nciccbr/ccbr_multiqc_1.15:v2", "picard": "docker://nciccbr/ccbr_picard:v0.0.1", "python": "docker://nciccbr/ccbr_python:v0.0.1", "qualimap": "docker://nciccbr/ccbr_qualimap:v0.0.1" From 721bbc3975355f6e5d766447d7302fa6585af8bc Mon Sep 17 00:00:00 2001 From: Kelly Sovacool Date: Fri, 1 Nov 2024 14:13:30 -0400 Subject: [PATCH 2/2] chore: update CHANGELOG.md --- CHANGELOG.md | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index c549b8d..2d5798a 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,7 +1,8 @@ ## XAVIER development version -- Bug fixes: - - Fix minor bug in assess_significance.R script associated with rule freec_exome_somatic (#120, @samarth8392) - + +- Fix minor bug in `assess_significance.R` script associated with rule `freec_exome_somatic`. (#120, @samarth8392) +- Fix bug in multiqc docker container, which caused an error when running xavier from ccbrpipeliner/7. (#123, @kelly-sovacool) + ## XAVIER 3.1.1 - New contributing guide available on GitHub and the documentation website. (#114, @kelly-sovacool)