diff --git a/.github/CONTRIBUTING.html b/.github/CONTRIBUTING.html
index 5be3654..4927f38 100644
--- a/.github/CONTRIBUTING.html
+++ b/.github/CONTRIBUTING.html
@@ -64,6 +64,8 @@
 <script src="../site_libs/quarto-search/fuse.min.js"></script>
 <script src="../site_libs/quarto-search/quarto-search.js"></script>
 <meta name="quarto:offset" content="../">
+<link href="../docs/contributors.html" rel="next">
+<link href="../docs/cite.html" rel="prev">
 <script src="../site_libs/quarto-html/quarto.js"></script>
 <script src="../site_libs/quarto-html/popper.min.js"></script>
 <script src="../site_libs/quarto-html/tippy.umd.min.js"></script>
@@ -105,53 +107,66 @@
 
 </head>
 
-<body class="nav-fixed">
+<body class="nav-sidebar floating nav-fixed">
 
 <div id="quarto-search-results"></div>
   <header id="quarto-header" class="headroom fixed-top">
     <nav class="navbar navbar-expand-lg " data-bs-theme="dark">
       <div class="navbar-container container-fluid">
+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
             <div id="quarto-search" class="" title="Search"></div>
           <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
   <span class="navbar-toggler-icon"></span>
 </button>
           <div class="collapse navbar-collapse" id="navbarCollapse">
             <ul class="navbar-nav navbar-nav-scroll me-auto">
-  <li class="nav-item">
-    <a class="nav-link" href="../docs/index.html"> 
-<span class="menu-text">home</span></a>
-  </li>  
-  <li class="nav-item">
-    <a class="nav-link" href="../docs/modules.html"> 
-<span class="menu-text">modules</span></a>
-  </li>  
-  <li class="nav-item">
-    <a class="nav-link" href="../docs/subworkflows.html"> 
-<span class="menu-text">subworkflows</span></a>
-  </li>  
-</ul>
-            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item dropdown ">
-    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-bi-list" role="link" data-bs-toggle="dropdown" aria-expanded="false">
-      <i class="bi bi-list" role="img">
-</i> 
- <span class="menu-text"></span>
+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-home" role="link" data-bs-toggle="dropdown" aria-expanded="false">
+ <span class="menu-text">home</span>
     </a>
-    <ul class="dropdown-menu dropdown-menu-end" aria-labelledby="nav-menu-bi-list">    
+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
+        <li>
+    <a class="dropdown-item" href="../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
+  </li>  
         <li>
     <a class="dropdown-item" href="../.github/CONTRIBUTING.html">
  <span class="dropdown-text">Contributing</span></a>
   </li>  
         <li>
-    <a class="dropdown-item" href="../CHANGELOG.html">
- <span class="dropdown-text">Changelog</span></a>
+    <a class="dropdown-item" href="../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
   </li>  
     </ul>
   </li>
+  <li class="nav-item">
+    <a class="nav-link" href="../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
+</ul>
+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
     <a class="nav-link" href="https://github.com/CCBR/nf-modules"> <i class="bi bi-github" role="img">
 </i> 
@@ -164,10 +179,74 @@
 </div>
       </div> <!-- /container-fluid -->
     </nav>
+  <nav class="quarto-secondary-nav">
+    <div class="container-fluid d-flex">
+      <button type="button" class="quarto-btn-toggle btn" data-bs-toggle="collapse" role="button" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
+        <i class="bi bi-layout-text-sidebar-reverse"></i>
+      </button>
+        <nav class="quarto-page-breadcrumbs" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="../docs/cite.html">project info</a></li><li class="breadcrumb-item"><a href="../.github/CONTRIBUTING.html">Contributing</a></li></ol></nav>
+        <a class="flex-grow-1" role="navigation" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">      
+        </a>
+    </div>
+  </nav>
 </header>
 <!-- content -->
 <div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article page-navbar">
 <!-- sidebar -->
+  <nav id="quarto-sidebar" class="sidebar collapse collapse-horizontal quarto-sidebar-collapse-item sidebar-navigation floating overflow-auto">
+    <div class="sidebar-menu-container"> 
+    <ul class="list-unstyled mt-1">
+        <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../docs/index.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">home</span></a>
+  </div>
+</li>
+        <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" role="navigation" aria-expanded="true">
+ <span class="menu-text">project info</span></a>
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" role="navigation" aria-expanded="true" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-1" class="collapse list-unstyled sidebar-section depth1 show">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../docs/cite.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Citation</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../.github/CONTRIBUTING.html" class="sidebar-item-text sidebar-link active">
+ <span class="menu-text">Contributing</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../docs/contributors.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Contributors</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../LICENSE.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">License</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../CHANGELOG.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Changelog</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+    </ul>
+    </div>
+</nav>
+<div id="quarto-sidebar-glass" class="quarto-sidebar-collapse-item" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item"></div>
 <!-- margin-sidebar -->
     <div id="quarto-margin-sidebar" class="sidebar margin-sidebar">
         <nav id="TOC" role="doc-toc" class="toc-active">
@@ -185,7 +264,7 @@ <h2 id="toc-title">On this page</h2>
 <div class="toc-actions"><ul><li><a href="https://github.com/CCBR/nf-modules/edit/main/.github/CONTRIBUTING.md" class="toc-action"><i class="bi bi-github"></i>Edit this page</a></li><li><a href="https://github.com/CCBR/nf-modules/issues/new" class="toc-action"><i class="bi empty"></i>Report an issue</a></li></ul></div></nav>
     </div>
 <!-- main -->
-<main class="content" id="quarto-document-content"><header id="title-block-header" class="quarto-title-block"></header>
+<main class="content" id="quarto-document-content"><header id="title-block-header" class="quarto-title-block"><nav class="quarto-page-breadcrumbs quarto-title-breadcrumbs d-none d-lg-block" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="../docs/cite.html">project info</a></li><li class="breadcrumb-item"><a href="../.github/CONTRIBUTING.html">Contributing</a></li></ol></nav></header>
 
 
 
@@ -788,6 +867,18 @@ <h2 class="anchored" data-anchor-id="vs-code-extensions">VS code extensions</h2>
   }
 });
 </script>
+<nav class="page-navigation">
+  <div class="nav-page nav-page-previous">
+      <a href="../docs/cite.html" class="pagination-link" aria-label="Citation">
+        <i class="bi bi-arrow-left-short"></i> <span class="nav-page-text">Citation</span>
+      </a>          
+  </div>
+  <div class="nav-page nav-page-next">
+      <a href="../docs/contributors.html" class="pagination-link" aria-label="Contributors">
+        <span class="nav-page-text">Contributors</span> <i class="bi bi-arrow-right-short"></i>
+      </a>
+  </div>
+</nav>
 </div> <!-- /content -->
 <footer class="footer">
   <div class="nav-footer">
diff --git a/.github/index.html b/.github/index.html
index ffe42d3..7d1f652 100644
--- a/.github/index.html
+++ b/.github/index.html
@@ -77,47 +77,60 @@
   <header id="quarto-header" class="headroom fixed-top">
     <nav class="navbar navbar-expand-lg " data-bs-theme="dark">
       <div class="navbar-container container-fluid">
+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
             <div id="quarto-search" class="" title="Search"></div>
           <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
   <span class="navbar-toggler-icon"></span>
 </button>
           <div class="collapse navbar-collapse" id="navbarCollapse">
             <ul class="navbar-nav navbar-nav-scroll me-auto">
-  <li class="nav-item">
-    <a class="nav-link" href="../docs/index.html"> 
-<span class="menu-text">home</span></a>
-  </li>  
-  <li class="nav-item">
-    <a class="nav-link" href="../docs/modules.html"> 
-<span class="menu-text">modules</span></a>
-  </li>  
-  <li class="nav-item">
-    <a class="nav-link" href="../docs/subworkflows.html"> 
-<span class="menu-text">subworkflows</span></a>
-  </li>  
-</ul>
-            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item dropdown ">
-    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-bi-list" role="link" data-bs-toggle="dropdown" aria-expanded="false">
-      <i class="bi bi-list" role="img">
-</i> 
- <span class="menu-text"></span>
+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-home" role="link" data-bs-toggle="dropdown" aria-expanded="false">
+ <span class="menu-text">home</span>
     </a>
-    <ul class="dropdown-menu dropdown-menu-end" aria-labelledby="nav-menu-bi-list">    
+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
+        <li>
+    <a class="dropdown-item" href="../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
+  </li>  
         <li>
     <a class="dropdown-item" href="../.github/CONTRIBUTING.html">
  <span class="dropdown-text">Contributing</span></a>
   </li>  
         <li>
-    <a class="dropdown-item" href="../CHANGELOG.html">
- <span class="dropdown-text">Changelog</span></a>
+    <a class="dropdown-item" href="../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
   </li>  
     </ul>
   </li>
+  <li class="nav-item">
+    <a class="nav-link" href="../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
+</ul>
+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
     <a class="nav-link" href="https://github.com/CCBR/nf-modules"> <i class="bi bi-github" role="img">
 </i> 
diff --git a/.nojekyll b/.nojekyll
index 65f839a..5f34771 100644
--- a/.nojekyll
+++ b/.nojekyll
@@ -1 +1 @@
-08aab74c
\ No newline at end of file
+c0c7c5c9
\ No newline at end of file
diff --git a/CHANGELOG.html b/CHANGELOG.html
index d586f4d..34c8456 100644
--- a/CHANGELOG.html
+++ b/CHANGELOG.html
@@ -30,6 +30,7 @@
 <script src="site_libs/quarto-search/fuse.min.js"></script>
 <script src="site_libs/quarto-search/quarto-search.js"></script>
 <meta name="quarto:offset" content="./">
+<link href="./LICENSE.html" rel="prev">
 <script src="site_libs/quarto-html/quarto.js"></script>
 <script src="site_libs/quarto-html/popper.min.js"></script>
 <script src="site_libs/quarto-html/tippy.umd.min.js"></script>
@@ -71,53 +72,66 @@
 
 </head>
 
-<body class="nav-fixed">
+<body class="nav-sidebar floating nav-fixed">
 
 <div id="quarto-search-results"></div>
   <header id="quarto-header" class="headroom fixed-top">
     <nav class="navbar navbar-expand-lg " data-bs-theme="dark">
       <div class="navbar-container container-fluid">
+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="./index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
             <div id="quarto-search" class="" title="Search"></div>
           <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
   <span class="navbar-toggler-icon"></span>
 </button>
           <div class="collapse navbar-collapse" id="navbarCollapse">
             <ul class="navbar-nav navbar-nav-scroll me-auto">
-  <li class="nav-item">
-    <a class="nav-link" href="./docs/index.html"> 
-<span class="menu-text">home</span></a>
-  </li>  
-  <li class="nav-item">
-    <a class="nav-link" href="./docs/modules.html"> 
-<span class="menu-text">modules</span></a>
-  </li>  
-  <li class="nav-item">
-    <a class="nav-link" href="./docs/subworkflows.html"> 
-<span class="menu-text">subworkflows</span></a>
-  </li>  
-</ul>
-            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item dropdown ">
-    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-bi-list" role="link" data-bs-toggle="dropdown" aria-expanded="false">
-      <i class="bi bi-list" role="img">
-</i> 
- <span class="menu-text"></span>
+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-home" role="link" data-bs-toggle="dropdown" aria-expanded="false">
+ <span class="menu-text">home</span>
     </a>
-    <ul class="dropdown-menu dropdown-menu-end" aria-labelledby="nav-menu-bi-list">    
+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
+        <li>
+    <a class="dropdown-item" href="./docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="./docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
+  </li>  
         <li>
     <a class="dropdown-item" href="./.github/CONTRIBUTING.html">
  <span class="dropdown-text">Contributing</span></a>
   </li>  
         <li>
-    <a class="dropdown-item" href="./CHANGELOG.html">
- <span class="dropdown-text">Changelog</span></a>
+    <a class="dropdown-item" href="./docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="./LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="./CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
   </li>  
     </ul>
   </li>
+  <li class="nav-item">
+    <a class="nav-link" href="./docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
+</ul>
+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
     <a class="nav-link" href="https://github.com/CCBR/nf-modules"> <i class="bi bi-github" role="img">
 </i> 
@@ -130,10 +144,74 @@
 </div>
       </div> <!-- /container-fluid -->
     </nav>
+  <nav class="quarto-secondary-nav">
+    <div class="container-fluid d-flex">
+      <button type="button" class="quarto-btn-toggle btn" data-bs-toggle="collapse" role="button" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
+        <i class="bi bi-layout-text-sidebar-reverse"></i>
+      </button>
+        <nav class="quarto-page-breadcrumbs" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="./docs/cite.html">project info</a></li><li class="breadcrumb-item"><a href="./CHANGELOG.html">Changelog</a></li></ol></nav>
+        <a class="flex-grow-1" role="navigation" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">      
+        </a>
+    </div>
+  </nav>
 </header>
 <!-- content -->
 <div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article page-navbar">
 <!-- sidebar -->
+  <nav id="quarto-sidebar" class="sidebar collapse collapse-horizontal quarto-sidebar-collapse-item sidebar-navigation floating overflow-auto">
+    <div class="sidebar-menu-container"> 
+    <ul class="list-unstyled mt-1">
+        <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./docs/index.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">home</span></a>
+  </div>
+</li>
+        <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" role="navigation" aria-expanded="true">
+ <span class="menu-text">project info</span></a>
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" role="navigation" aria-expanded="true" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-1" class="collapse list-unstyled sidebar-section depth1 show">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./docs/cite.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Citation</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./.github/CONTRIBUTING.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Contributing</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./docs/contributors.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Contributors</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./LICENSE.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">License</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./CHANGELOG.html" class="sidebar-item-text sidebar-link active">
+ <span class="menu-text">Changelog</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+    </ul>
+    </div>
+</nav>
+<div id="quarto-sidebar-glass" class="quarto-sidebar-collapse-item" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item"></div>
 <!-- margin-sidebar -->
     <div id="quarto-margin-sidebar" class="sidebar margin-sidebar">
         <nav id="TOC" role="doc-toc" class="toc-active">
@@ -154,7 +232,7 @@ <h2 id="toc-title">On this page</h2>
 <div class="toc-actions"><ul><li><a href="https://github.com/CCBR/nf-modules/edit/main/CHANGELOG.md" class="toc-action"><i class="bi bi-github"></i>Edit this page</a></li><li><a href="https://github.com/CCBR/nf-modules/issues/new" class="toc-action"><i class="bi empty"></i>Report an issue</a></li></ul></div></nav>
     </div>
 <!-- main -->
-<main class="content" id="quarto-document-content"><header id="title-block-header" class="quarto-title-block"></header>
+<main class="content" id="quarto-document-content"><header id="title-block-header" class="quarto-title-block"><nav class="quarto-page-breadcrumbs quarto-title-breadcrumbs d-none d-lg-block" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="./docs/cite.html">project info</a></li><li class="breadcrumb-item"><a href="./CHANGELOG.html">Changelog</a></li></ol></nav></header>
 
 
 
@@ -777,6 +855,15 @@ <h3 class="anchored" data-anchor-id="new-subworkflows-1">New subworkflows</h3>
   }
 });
 </script>
+<nav class="page-navigation">
+  <div class="nav-page nav-page-previous">
+      <a href="./LICENSE.html" class="pagination-link" aria-label="License">
+        <i class="bi bi-arrow-left-short"></i> <span class="nav-page-text">License</span>
+      </a>          
+  </div>
+  <div class="nav-page nav-page-next">
+  </div>
+</nav>
 </div> <!-- /content -->
 <footer class="footer">
   <div class="nav-footer">
diff --git a/LICENSE.html b/LICENSE.html
index 92d1d32..edf233b 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -30,6 +30,8 @@
 <script src="site_libs/quarto-search/fuse.min.js"></script>
 <script src="site_libs/quarto-search/quarto-search.js"></script>
 <meta name="quarto:offset" content="./">
+<link href="./CHANGELOG.html" rel="next">
+<link href="./docs/contributors.html" rel="prev">
 <script src="site_libs/quarto-html/quarto.js"></script>
 <script src="site_libs/quarto-html/popper.min.js"></script>
 <script src="site_libs/quarto-html/tippy.umd.min.js"></script>
@@ -71,53 +73,66 @@
 
 </head>
 
-<body class="nav-fixed">
+<body class="nav-sidebar floating nav-fixed">
 
 <div id="quarto-search-results"></div>
   <header id="quarto-header" class="headroom fixed-top">
     <nav class="navbar navbar-expand-lg " data-bs-theme="dark">
       <div class="navbar-container container-fluid">
+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="./index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
             <div id="quarto-search" class="" title="Search"></div>
           <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
   <span class="navbar-toggler-icon"></span>
 </button>
           <div class="collapse navbar-collapse" id="navbarCollapse">
             <ul class="navbar-nav navbar-nav-scroll me-auto">
-  <li class="nav-item">
-    <a class="nav-link" href="./docs/index.html"> 
-<span class="menu-text">home</span></a>
-  </li>  
-  <li class="nav-item">
-    <a class="nav-link" href="./docs/modules.html"> 
-<span class="menu-text">modules</span></a>
-  </li>  
-  <li class="nav-item">
-    <a class="nav-link" href="./docs/subworkflows.html"> 
-<span class="menu-text">subworkflows</span></a>
-  </li>  
-</ul>
-            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item dropdown ">
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-      <i class="bi bi-list" role="img">
-</i> 
- <span class="menu-text"></span>
+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-home" role="link" data-bs-toggle="dropdown" aria-expanded="false">
+ <span class="menu-text">home</span>
     </a>
-    <ul class="dropdown-menu dropdown-menu-end" aria-labelledby="nav-menu-bi-list">    
+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
+        <li>
+    <a class="dropdown-item" href="./docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="./docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
+  </li>  
         <li>
     <a class="dropdown-item" href="./.github/CONTRIBUTING.html">
  <span class="dropdown-text">Contributing</span></a>
   </li>  
         <li>
-    <a class="dropdown-item" href="./CHANGELOG.html">
- <span class="dropdown-text">Changelog</span></a>
+    <a class="dropdown-item" href="./docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="./LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="./CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
   </li>  
     </ul>
   </li>
+  <li class="nav-item">
+    <a class="nav-link" href="./docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="./docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
+</ul>
+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
     <a class="nav-link" href="https://github.com/CCBR/nf-modules"> <i class="bi bi-github" role="img">
 </i> 
@@ -130,16 +145,80 @@
 </div>
       </div> <!-- /container-fluid -->
     </nav>
+  <nav class="quarto-secondary-nav">
+    <div class="container-fluid d-flex">
+      <button type="button" class="quarto-btn-toggle btn" data-bs-toggle="collapse" role="button" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
+        <i class="bi bi-layout-text-sidebar-reverse"></i>
+      </button>
+        <nav class="quarto-page-breadcrumbs" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="./docs/cite.html">project info</a></li><li class="breadcrumb-item"><a href="./LICENSE.html">License</a></li></ol></nav>
+        <a class="flex-grow-1" role="navigation" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">      
+        </a>
+    </div>
+  </nav>
 </header>
 <!-- content -->
 <div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article page-navbar">
 <!-- sidebar -->
+  <nav id="quarto-sidebar" class="sidebar collapse collapse-horizontal quarto-sidebar-collapse-item sidebar-navigation floating overflow-auto">
+    <div class="sidebar-menu-container"> 
+    <ul class="list-unstyled mt-1">
+        <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./docs/index.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">home</span></a>
+  </div>
+</li>
+        <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" role="navigation" aria-expanded="true">
+ <span class="menu-text">project info</span></a>
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" role="navigation" aria-expanded="true" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-1" class="collapse list-unstyled sidebar-section depth1 show">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./docs/cite.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Citation</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./.github/CONTRIBUTING.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Contributing</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./docs/contributors.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Contributors</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./LICENSE.html" class="sidebar-item-text sidebar-link active">
+ <span class="menu-text">License</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./CHANGELOG.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Changelog</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+    </ul>
+    </div>
+</nav>
+<div id="quarto-sidebar-glass" class="quarto-sidebar-collapse-item" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item"></div>
 <!-- margin-sidebar -->
     <div id="quarto-margin-sidebar" class="sidebar margin-sidebar zindex-bottom">
         
     </div>
 <!-- main -->
-<main class="content" id="quarto-document-content"><header id="title-block-header" class="quarto-title-block"></header>
+<main class="content" id="quarto-document-content"><header id="title-block-header" class="quarto-title-block"><nav class="quarto-page-breadcrumbs quarto-title-breadcrumbs d-none d-lg-block" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="./docs/cite.html">project info</a></li><li class="breadcrumb-item"><a href="./LICENSE.html">License</a></li></ol></nav></header>
 
 
 
@@ -714,6 +793,18 @@
   }
 });
 </script>
+<nav class="page-navigation">
+  <div class="nav-page nav-page-previous">
+      <a href="./docs/contributors.html" class="pagination-link" aria-label="Contributors">
+        <i class="bi bi-arrow-left-short"></i> <span class="nav-page-text">Contributors</span>
+      </a>          
+  </div>
+  <div class="nav-page nav-page-next">
+      <a href="./CHANGELOG.html" class="pagination-link" aria-label="Changelog">
+        <span class="nav-page-text">Changelog</span> <i class="bi bi-arrow-right-short"></i>
+      </a>
+  </div>
+</nav>
 </div> <!-- /content -->
 <footer class="footer">
   <div class="nav-footer">
diff --git a/docs/cite.html b/docs/cite.html
new file mode 100644
index 0000000..7785ef4
--- /dev/null
+++ b/docs/cite.html
@@ -0,0 +1,876 @@
+<!DOCTYPE html>
+<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
+
+<meta charset="utf-8">
+<meta name="generator" content="quarto-1.6.39">
+
+<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
+
+
+<title>cite – nf-modules</title>
+<style>
+code{white-space: pre-wrap;}
+span.smallcaps{font-variant: small-caps;}
+div.columns{display: flex; gap: min(4vw, 1.5em);}
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+}
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+  { position: relative; left: -4em; counter-increment: source-line; }
+pre.numberSource code > span > a:first-child::before
+  { content: counter(source-line);
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+    -webkit-touch-callout: none; -webkit-user-select: none;
+    -khtml-user-select: none; -moz-user-select: none;
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+pre.numberSource { margin-left: 3em;  padding-left: 4px; }
+div.sourceCode
+  {   }
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+pre > code.sourceCode > span > a:first-child::before { text-decoration: underline; }
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+<script src="../site_libs/quarto-nav/quarto-nav.js"></script>
+<script src="../site_libs/quarto-nav/headroom.min.js"></script>
+<script src="../site_libs/clipboard/clipboard.min.js"></script>
+<script src="../site_libs/quarto-search/autocomplete.umd.js"></script>
+<script src="../site_libs/quarto-search/fuse.min.js"></script>
+<script src="../site_libs/quarto-search/quarto-search.js"></script>
+<meta name="quarto:offset" content="../">
+<link href="../.github/CONTRIBUTING.html" rel="next">
+<link href="../docs/index.html" rel="prev">
+<script src="../site_libs/quarto-html/quarto.js"></script>
+<script src="../site_libs/quarto-html/popper.min.js"></script>
+<script src="../site_libs/quarto-html/tippy.umd.min.js"></script>
+<script src="../site_libs/quarto-html/anchor.min.js"></script>
+<link href="../site_libs/quarto-html/tippy.css" rel="stylesheet">
+<link href="../site_libs/quarto-html/quarto-syntax-highlighting-0f678b7eab269e1f93ad2a885b46ecea.css" rel="stylesheet" class="quarto-color-scheme" id="quarto-text-highlighting-styles">
+<link href="../site_libs/quarto-html/quarto-syntax-highlighting-dark-b8f2631c081afeae376df51fffb043a0.css" rel="stylesheet" class="quarto-color-scheme quarto-color-alternate" id="quarto-text-highlighting-styles">
+<script src="../site_libs/bootstrap/bootstrap.min.js"></script>
+<link href="../site_libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
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+<link href="../site_libs/bootstrap/bootstrap-dark-2c2dd3e39f4dd278257b1c79b7bdc29c.min.css" rel="stylesheet" append-hash="true" class="quarto-color-scheme quarto-color-alternate" id="quarto-bootstrap" data-mode="dark">
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+</head>
+
+<body class="nav-sidebar floating nav-fixed">
+
+<div id="quarto-search-results"></div>
+  <header id="quarto-header" class="headroom fixed-top">
+    <nav class="navbar navbar-expand-lg " data-bs-theme="dark">
+      <div class="navbar-container container-fluid">
+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
+            <div id="quarto-search" class="" title="Search"></div>
+          <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
+  <span class="navbar-toggler-icon"></span>
+</button>
+          <div class="collapse navbar-collapse" id="navbarCollapse">
+            <ul class="navbar-nav navbar-nav-scroll me-auto">
+  <li class="nav-item dropdown ">
+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-home" role="link" data-bs-toggle="dropdown" aria-expanded="false">
+ <span class="menu-text">home</span>
+    </a>
+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
+        <li>
+    <a class="dropdown-item" href="../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../.github/CONTRIBUTING.html">
+ <span class="dropdown-text">Contributing</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../LICENSE.html">
+ <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
+  </li>  
+    </ul>
+  </li>
+  <li class="nav-item">
+    <a class="nav-link" href="../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
+</ul>
+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
+  <li class="nav-item compact">
+    <a class="nav-link" href="https://github.com/CCBR/nf-modules"> <i class="bi bi-github" role="img">
+</i> 
+<span class="menu-text"></span></a>
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+    <div class="container-fluid d-flex">
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+        <i class="bi bi-layout-text-sidebar-reverse"></i>
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+        <nav class="quarto-page-breadcrumbs" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="../docs/cite.html">project info</a></li><li class="breadcrumb-item"><a href="../docs/cite.html">Citation</a></li></ol></nav>
+        <a class="flex-grow-1" role="navigation" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">      
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+    </div>
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+<!-- content -->
+<div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article page-navbar">
+<!-- sidebar -->
+  <nav id="quarto-sidebar" class="sidebar collapse collapse-horizontal quarto-sidebar-collapse-item sidebar-navigation floating overflow-auto">
+    <div class="sidebar-menu-container"> 
+    <ul class="list-unstyled mt-1">
+        <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../docs/index.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">home</span></a>
+  </div>
+</li>
+        <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" role="navigation" aria-expanded="true">
+ <span class="menu-text">project info</span></a>
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" role="navigation" aria-expanded="true" aria-label="Toggle section">
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+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-1" class="collapse list-unstyled sidebar-section depth1 show">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../docs/cite.html" class="sidebar-item-text sidebar-link active">
+ <span class="menu-text">Citation</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../.github/CONTRIBUTING.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Contributing</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../docs/contributors.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Contributors</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../LICENSE.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">License</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../CHANGELOG.html" class="sidebar-item-text sidebar-link">
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+    <h2 id="toc-title">On this page</h2>
+   
+  <ul>
+  <li><a href="#bibtex-entry" id="toc-bibtex-entry" class="nav-link active" data-scroll-target="#bibtex-entry">Bibtex entry</a></li>
+  </ul>
+<div class="toc-actions"><ul><li><a href="https://github.com/CCBR/nf-modules/edit/main/docs/cite.qmd" class="toc-action"><i class="bi bi-github"></i>Edit this page</a></li><li><a href="https://github.com/CCBR/nf-modules/issues/new" class="toc-action"><i class="bi empty"></i>Report an issue</a></li></ul></div></nav>
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+
+
+
+
+<p>Please cite this software if you use it in a publication:</p>
+<blockquote class="blockquote">
+<p>Sovacool K., Koparde V. (2023). nf-modules: Reusable modules and subworkflows for CCBR Nextflow pipelines (version v0.1.0). DOI: 10.5281/zenodo.10223357 URL: https://CCBR.github.io/nf-modules/</p>
+</blockquote>
+<section id="bibtex-entry" class="level3">
+<h3 class="anchored" data-anchor-id="bibtex-entry">Bibtex entry</h3>
+<div class="sourceCode" id="cb1"><pre class="sourceCode bibtex code-with-copy"><code class="sourceCode bibtex"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="va">@misc</span>{<span class="ot">YourReferenceHere</span>,</span>
+<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a><span class="dt">author</span> = {Sovacool, Kelly and Koparde, Vishal},</span>
+<span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a><span class="dt">doi</span> = {10.5281/zenodo.10223357},</span>
+<span id="cb1-4"><a href="#cb1-4" aria-hidden="true" tabindex="-1"></a><span class="dt">month</span> = {11},</span>
+<span id="cb1-5"><a href="#cb1-5" aria-hidden="true" tabindex="-1"></a><span class="dt">title</span> = {nf-modules: Reusable modules and subworkflows for CCBR Nextflow pipelines},</span>
+<span id="cb1-6"><a href="#cb1-6" aria-hidden="true" tabindex="-1"></a><span class="dt">url</span> = {https://CCBR.github.io/nf-modules/},</span>
+<span id="cb1-7"><a href="#cb1-7" aria-hidden="true" tabindex="-1"></a><span class="dt">year</span> = {2023}</span>
+<span id="cb1-8"><a href="#cb1-8" aria-hidden="true" tabindex="-1"></a>}</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+
+
+</section>
+
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+    for (var i=0; i<links.length; i++) {
+      const link = links[i];
+      if (!isInternal(link.href)) {
+        // undo the damage that might have been done by quarto-nav.js in the case of
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+  function tippyHover(el, contentFn, onTriggerFn, onUntriggerFn) {
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+      },
+      interactive: true,
+      interactiveBorder: 10,
+      theme: 'quarto',
+      placement: 'bottom-start',
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+    if (contentFn) {
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+    }
+    if (onTriggerFn) {
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+    if (onUntriggerFn) {
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+    window.tippy(el, config); 
+  }
+  const noterefs = window.document.querySelectorAll('a[role="doc-noteref"]');
+  for (var i=0; i<noterefs.length; i++) {
+    const ref = noterefs[i];
+    tippyHover(ref, function() {
+      // use id or data attribute instead here
+      let href = ref.getAttribute('data-footnote-href') || ref.getAttribute('href');
+      try { href = new URL(href).hash; } catch {}
+      const id = href.replace(/^#\/?/, "");
+      const note = window.document.getElementById(id);
+      if (note) {
+        return note.innerHTML;
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+        return "";
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+  }
+  const xrefs = window.document.querySelectorAll('a.quarto-xref');
+  const processXRef = (id, note) => {
+    // Strip column container classes
+    const stripColumnClz = (el) => {
+      el.classList.remove("page-full", "page-columns");
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+        for (const child of el.children) {
+          stripColumnClz(child);
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+    stripColumnClz(note)
+    if (id === null || id.startsWith('sec-')) {
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+            container.appendChild(child.cloneNode(true));
+            break;
+          }
+        }
+        if (window.Quarto?.typesetMath) {
+          window.Quarto.typesetMath(container);
+        }
+        return container.innerHTML
+      } else {
+        if (window.Quarto?.typesetMath) {
+          window.Quarto.typesetMath(note);
+        }
+        return note.innerHTML;
+      }
+    } else {
+      // Remove any anchor links if they are present
+      const anchorLink = note.querySelector('a.anchorjs-link');
+      if (anchorLink) {
+        anchorLink.remove();
+      }
+      if (window.Quarto?.typesetMath) {
+        window.Quarto.typesetMath(note);
+      }
+      if (note.classList.contains("callout")) {
+        return note.outerHTML;
+      } else {
+        return note.innerHTML;
+      }
+    }
+  }
+  for (var i=0; i<xrefs.length; i++) {
+    const xref = xrefs[i];
+    tippyHover(xref, undefined, function(instance) {
+      instance.disable();
+      let url = xref.getAttribute('href');
+      let hash = undefined; 
+      if (url.startsWith('#')) {
+        hash = url;
+      } else {
+        try { hash = new URL(url).hash; } catch {}
+      }
+      if (hash) {
+        const id = hash.replace(/^#\/?/, "");
+        const note = window.document.getElementById(id);
+        if (note !== null) {
+          try {
+            const html = processXRef(id, note.cloneNode(true));
+            instance.setContent(html);
+          } finally {
+            instance.enable();
+            instance.show();
+          }
+        } else {
+          // See if we can fetch this
+          fetch(url.split('#')[0])
+          .then(res => res.text())
+          .then(html => {
+            const parser = new DOMParser();
+            const htmlDoc = parser.parseFromString(html, "text/html");
+            const note = htmlDoc.getElementById(id);
+            if (note !== null) {
+              const html = processXRef(id, note);
+              instance.setContent(html);
+            } 
+          }).finally(() => {
+            instance.enable();
+            instance.show();
+          });
+        }
+      } else {
+        // See if we can fetch a full url (with no hash to target)
+        // This is a special case and we should probably do some content thinning / targeting
+        fetch(url)
+        .then(res => res.text())
+        .then(html => {
+          const parser = new DOMParser();
+          const htmlDoc = parser.parseFromString(html, "text/html");
+          const note = htmlDoc.querySelector('main.content');
+          if (note !== null) {
+            // This should only happen for chapter cross references
+            // (since there is no id in the URL)
+            // remove the first header
+            if (note.children.length > 0 && note.children[0].tagName === "HEADER") {
+              note.children[0].remove();
+            }
+            const html = processXRef(null, note);
+            instance.setContent(html);
+          } 
+        }).finally(() => {
+          instance.enable();
+          instance.show();
+        });
+      }
+    }, function(instance) {
+    });
+  }
+      let selectedAnnoteEl;
+      const selectorForAnnotation = ( cell, annotation) => {
+        let cellAttr = 'data-code-cell="' + cell + '"';
+        let lineAttr = 'data-code-annotation="' +  annotation + '"';
+        const selector = 'span[' + cellAttr + '][' + lineAttr + ']';
+        return selector;
+      }
+      const selectCodeLines = (annoteEl) => {
+        const doc = window.document;
+        const targetCell = annoteEl.getAttribute("data-target-cell");
+        const targetAnnotation = annoteEl.getAttribute("data-target-annotation");
+        const annoteSpan = window.document.querySelector(selectorForAnnotation(targetCell, targetAnnotation));
+        const lines = annoteSpan.getAttribute("data-code-lines").split(",");
+        const lineIds = lines.map((line) => {
+          return targetCell + "-" + line;
+        })
+        let top = null;
+        let height = null;
+        let parent = null;
+        if (lineIds.length > 0) {
+            //compute the position of the single el (top and bottom and make a div)
+            const el = window.document.getElementById(lineIds[0]);
+            top = el.offsetTop;
+            height = el.offsetHeight;
+            parent = el.parentElement.parentElement;
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+            height = bottom - top;
+          }
+          if (top !== null && height !== null && parent !== null) {
+            // cook up a div (if necessary) and position it 
+            let div = window.document.getElementById("code-annotation-line-highlight");
+            if (div === null) {
+              div = window.document.createElement("div");
+              div.setAttribute("id", "code-annotation-line-highlight");
+              div.style.position = 'absolute';
+              parent.appendChild(div);
+            }
+            div.style.top = top - 2 + "px";
+            div.style.height = height + 4 + "px";
+            div.style.left = 0;
+            let gutterDiv = window.document.getElementById("code-annotation-line-highlight-gutter");
+            if (gutterDiv === null) {
+              gutterDiv = window.document.createElement("div");
+              gutterDiv.setAttribute("id", "code-annotation-line-highlight-gutter");
+              gutterDiv.style.position = 'absolute';
+              const codeCell = window.document.getElementById(targetCell);
+              const gutter = codeCell.querySelector('.code-annotation-gutter');
+              gutter.appendChild(gutterDiv);
+            }
+            gutterDiv.style.top = top - 2 + "px";
+            gutterDiv.style.height = height + 4 + "px";
+          }
+          selectedAnnoteEl = annoteEl;
+        }
+      };
+      const unselectCodeLines = () => {
+        const elementsIds = ["code-annotation-line-highlight", "code-annotation-line-highlight-gutter"];
+        elementsIds.forEach((elId) => {
+          const div = window.document.getElementById(elId);
+          if (div) {
+            div.remove();
+          }
+        });
+        selectedAnnoteEl = undefined;
+      };
+        // Handle positioning of the toggle
+    window.addEventListener(
+      "resize",
+      throttle(() => {
+        elRect = undefined;
+        if (selectedAnnoteEl) {
+          selectCodeLines(selectedAnnoteEl);
+        }
+      }, 10)
+    );
+    function throttle(fn, ms) {
+    let throttle = false;
+    let timer;
+      return (...args) => {
+        if(!throttle) { // first call gets through
+            fn.apply(this, args);
+            throttle = true;
+        } else { // all the others get throttled
+            if(timer) clearTimeout(timer); // cancel #2
+            timer = setTimeout(() => {
+              fn.apply(this, args);
+              timer = throttle = false;
+            }, ms);
+        }
+      };
+    }
+      // Attach click handler to the DT
+      const annoteDls = window.document.querySelectorAll('dt[data-target-cell]');
+      for (const annoteDlNode of annoteDls) {
+        annoteDlNode.addEventListener('click', (event) => {
+          const clickedEl = event.target;
+          if (clickedEl !== selectedAnnoteEl) {
+            unselectCodeLines();
+            const activeEl = window.document.querySelector('dt[data-target-cell].code-annotation-active');
+            if (activeEl) {
+              activeEl.classList.remove('code-annotation-active');
+            }
+            selectCodeLines(clickedEl);
+            clickedEl.classList.add('code-annotation-active');
+          } else {
+            // Unselect the line
+            unselectCodeLines();
+            clickedEl.classList.remove('code-annotation-active');
+          }
+        });
+      }
+  const findCites = (el) => {
+    const parentEl = el.parentElement;
+    if (parentEl) {
+      const cites = parentEl.dataset.cites;
+      if (cites) {
+        return {
+          el,
+          cites: cites.split(' ')
+        };
+      } else {
+        return findCites(el.parentElement)
+      }
+    } else {
+      return undefined;
+    }
+  };
+  var bibliorefs = window.document.querySelectorAll('a[role="doc-biblioref"]');
+  for (var i=0; i<bibliorefs.length; i++) {
+    const ref = bibliorefs[i];
+    const citeInfo = findCites(ref);
+    if (citeInfo) {
+      tippyHover(citeInfo.el, function() {
+        var popup = window.document.createElement('div');
+        citeInfo.cites.forEach(function(cite) {
+          var citeDiv = window.document.createElement('div');
+          citeDiv.classList.add('hanging-indent');
+          citeDiv.classList.add('csl-entry');
+          var biblioDiv = window.document.getElementById('ref-' + cite);
+          if (biblioDiv) {
+            citeDiv.innerHTML = biblioDiv.innerHTML;
+          }
+          popup.appendChild(citeDiv);
+        });
+        return popup.innerHTML;
+      });
+    }
+  }
+});
+</script>
+<nav class="page-navigation">
+  <div class="nav-page nav-page-previous">
+      <a href="../.github/CONTRIBUTING.html" class="pagination-link" aria-label="Contributing">
+        <i class="bi bi-arrow-left-short"></i> <span class="nav-page-text">Contributing</span>
+      </a>          
+  </div>
+  <div class="nav-page nav-page-next">
+      <a href="../LICENSE.html" class="pagination-link" aria-label="License">
+        <span class="nav-page-text">License</span> <i class="bi bi-arrow-right-short"></i>
+      </a>
+  </div>
+</nav>
+</div> <!-- /content -->
+<footer class="footer">
+  <div class="nav-footer">
+    <div class="nav-footer-left">
+<p><a href="https://frederick.cancer.gov/research/science-areas/bioinformatics-and-computational-science/advanced-biomedical-computational-science"><img src="../site_libs/quarto-contrib/quarto-project/fnl/fnl-logo-dark.png" height="70"></a></p>
+</div>   
+    <div class="nav-footer-center">
+<p>Created by the <a href="https://github.com/CCBR">CCR Collaborative Bioinformatics Resource</a></p>
+<div class="toc-actions"><ul><li><a href="https://github.com/CCBR/nf-modules/edit/main/docs/contributors.qmd" class="toc-action"><i class="bi bi-github"></i>Edit this page</a></li><li><a href="https://github.com/CCBR/nf-modules/issues/new" class="toc-action"><i class="bi empty"></i>Report an issue</a></li></ul></div></div>
+    <div class="nav-footer-right">
+      &nbsp;
+    </div>
+  </div>
+</footer>
+
+
+
+
+</body></html>
\ No newline at end of file
diff --git a/docs/index.html b/docs/index.html
index 3b4265b..f33fdbb 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -64,6 +64,7 @@
 <script src="../site_libs/quarto-search/fuse.min.js"></script>
 <script src="../site_libs/quarto-search/quarto-search.js"></script>
 <meta name="quarto:offset" content="../">
+<link href="../docs/cite.html" rel="next">
 <script src="../site_libs/quarto-html/quarto.js"></script>
 <script src="../site_libs/quarto-html/popper.min.js"></script>
 <script src="../site_libs/quarto-html/tippy.umd.min.js"></script>
@@ -105,53 +106,66 @@
 
 </head>
 
-<body class="nav-fixed">
+<body class="nav-sidebar floating nav-fixed">
 
 <div id="quarto-search-results"></div>
   <header id="quarto-header" class="headroom fixed-top quarto-banner">
     <nav class="navbar navbar-expand-lg " data-bs-theme="dark">
       <div class="navbar-container container-fluid">
+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
             <div id="quarto-search" class="" title="Search"></div>
           <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
   <span class="navbar-toggler-icon"></span>
 </button>
           <div class="collapse navbar-collapse" id="navbarCollapse">
             <ul class="navbar-nav navbar-nav-scroll me-auto">
-  <li class="nav-item">
-    <a class="nav-link active" href="../docs/index.html" aria-current="page"> 
-<span class="menu-text">home</span></a>
-  </li>  
-  <li class="nav-item">
-    <a class="nav-link" href="../docs/modules.html"> 
-<span class="menu-text">modules</span></a>
-  </li>  
-  <li class="nav-item">
-    <a class="nav-link" href="../docs/subworkflows.html"> 
-<span class="menu-text">subworkflows</span></a>
-  </li>  
-</ul>
-            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item dropdown ">
-    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-bi-list" role="link" data-bs-toggle="dropdown" aria-expanded="false">
-      <i class="bi bi-list" role="img">
-</i> 
- <span class="menu-text"></span>
+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-home" role="link" data-bs-toggle="dropdown" aria-expanded="false">
+ <span class="menu-text">home</span>
     </a>
-    <ul class="dropdown-menu dropdown-menu-end" aria-labelledby="nav-menu-bi-list">    
+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
+        <li>
+    <a class="dropdown-item" href="../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
+  </li>  
         <li>
     <a class="dropdown-item" href="../.github/CONTRIBUTING.html">
  <span class="dropdown-text">Contributing</span></a>
   </li>  
         <li>
-    <a class="dropdown-item" href="../CHANGELOG.html">
- <span class="dropdown-text">Changelog</span></a>
+    <a class="dropdown-item" href="../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
   </li>  
     </ul>
   </li>
+  <li class="nav-item">
+    <a class="nav-link" href="../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
+</ul>
+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
     <a class="nav-link" href="https://github.com/CCBR/nf-modules"> <i class="bi bi-github" role="img">
 </i> 
@@ -164,6 +178,16 @@
 </div>
       </div> <!-- /container-fluid -->
     </nav>
+  <nav class="quarto-secondary-nav">
+    <div class="container-fluid d-flex">
+      <button type="button" class="quarto-btn-toggle btn" data-bs-toggle="collapse" role="button" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
+        <i class="bi bi-layout-text-sidebar-reverse"></i>
+      </button>
+        <nav class="quarto-page-breadcrumbs" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="../docs/index.html">home</a></li></ol></nav>
+        <a class="flex-grow-1" role="navigation" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">      
+        </a>
+    </div>
+  </nav>
 </header>
 <!-- content -->
 <header id="title-block-header" class="quarto-title-block default page-columns page-full">
@@ -184,6 +208,60 @@ <h1 class="title">CCBR/nf-modules</h1>
   
   </header><div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article page-navbar">
 <!-- sidebar -->
+  <nav id="quarto-sidebar" class="sidebar collapse collapse-horizontal quarto-sidebar-collapse-item sidebar-navigation floating overflow-auto">
+    <div class="sidebar-menu-container"> 
+    <ul class="list-unstyled mt-1">
+        <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../docs/index.html" class="sidebar-item-text sidebar-link active">
+ <span class="menu-text">home</span></a>
+  </div>
+</li>
+        <li class="sidebar-item sidebar-item-section">
+      <div class="sidebar-item-container"> 
+            <a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" role="navigation" aria-expanded="true">
+ <span class="menu-text">project info</span></a>
+          <a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" role="navigation" aria-expanded="true" aria-label="Toggle section">
+            <i class="bi bi-chevron-right ms-2"></i>
+          </a> 
+      </div>
+      <ul id="quarto-sidebar-section-1" class="collapse list-unstyled sidebar-section depth1 show">  
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../docs/cite.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Citation</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../.github/CONTRIBUTING.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Contributing</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../docs/contributors.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Contributors</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../LICENSE.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">License</span></a>
+  </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="../CHANGELOG.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text">Changelog</span></a>
+  </div>
+</li>
+      </ul>
+  </li>
+    </ul>
+    </div>
+</nav>
+<div id="quarto-sidebar-glass" class="quarto-sidebar-collapse-item" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item"></div>
 <!-- margin-sidebar -->
     <div id="quarto-margin-sidebar" class="sidebar margin-sidebar">
         <nav id="TOC" role="doc-toc" class="toc-active">
@@ -208,7 +286,7 @@ <h2 id="toc-title">On this page</h2>
 
 <section id="nf-modules" class="level1">
 <h1>nf-modules</h1>
-<p>Reusable modules and subworkflows for Nextflow pipelines</p>
+<p>Reusable <a href="https://ccbr.github.io/nf-modules/docs/modules.html">modules</a> and <a href="https://ccbr.github.io/nf-modules/docs/subworkflows.html">subworkflows</a> for Nextflow pipelines</p>
 <p><a href="https://github.com/CCBR/nf-modules/actions/workflows/test.yml"><img src="https://github.com/CCBR/nf-modules/actions/workflows/test.yml/badge.svg" class="img-fluid" alt="test"></a> <a href="https://ccbr.github.io/nf-modules/"><img src="https://img.shields.io/badge/docs-📖-blue.png" class="img-fluid" alt="docs"></a> <a href="https://zenodo.org/doi/10.5281/zenodo.10223357"><img src="https://zenodo.org/badge/697904903.svg" class="img-fluid" alt="DOI"></a></p>
 <section id="usage" class="level2">
 <h2 class="anchored" data-anchor-id="usage">Usage</h2>
@@ -225,6 +303,7 @@ <h2 class="anchored" data-anchor-id="usage">Usage</h2>
 <div class="sourceCode" id="cb3"><pre class="sourceCode sh code-with-copy"><code class="sourceCode bash"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true" tabindex="-1"></a><span class="ex">nf-core</span> subworkflows <span class="dt">\</span></span>
 <span id="cb3-2"><a href="#cb3-2" aria-hidden="true" tabindex="-1"></a>  <span class="at">--git-remote</span> https://github.com/CCBR/nf-modules <span class="dt">\</span></span>
 <span id="cb3-3"><a href="#cb3-3" aria-hidden="true" tabindex="-1"></a>  update <span class="pp">[</span><span class="ss">subworkflow</span><span class="pp">]</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+<p>View listings of available <a href="https://ccbr.github.io/nf-modules/docs/modules.html">modules</a> and <a href="https://ccbr.github.io/nf-modules/docs/subworkflows.html">subworkflows</a> on the <a href="https://ccbr.github.io/nf-modules/">documentation website</a>.</p>
 </section>
 <section id="help-contributing" class="level2">
 <h2 class="anchored" data-anchor-id="help-contributing">Help &amp; Contributing</h2>
@@ -811,6 +890,15 @@ <h2 class="anchored" data-anchor-id="references">References</h2>
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+  <div class="nav-page nav-page-previous">
+  </div>
+  <div class="nav-page nav-page-next">
+      <a href="../docs/cite.html" class="pagination-link" aria-label="Citation">
+        <span class="nav-page-text">Citation</span> <i class="bi bi-arrow-right-short"></i>
+      </a>
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diff --git a/docs/modules.html b/docs/modules.html
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+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
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+<div class="g-col-1" data-index="20" data-categories="c29ydCUyQ2JhbSUyQ3NhbSUyQ2NyYW0=" data-listing-file-modified-sort="1735602441423" data-listing-reading-time-sort="3" data-listing-word-count-sort="548">
 <a href="../docs/modules/samtools_sort.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <div class="card-body post-contents">
@@ -822,7 +835,7 @@ <h5 class="no-anchor card-title listing-title">
 </div>
 </a>
 </div>
-<div class="g-col-1" data-index="21" data-categories="c29ydCUyQ2JlZCUyQ2dlbm9taWNz" data-listing-file-modified-sort="1735597770383" data-listing-reading-time-sort="3" data-listing-word-count-sort="548">
+<div class="g-col-1" data-index="21" data-categories="c29ydCUyQ2JlZCUyQ2dlbm9taWNz" data-listing-file-modified-sort="1735602441384" data-listing-reading-time-sort="3" data-listing-word-count-sort="548">
 <a href="../docs/modules/sort_bed.html" class="quarto-grid-link">
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index 60bf4f9..8cd7a96 100644
--- a/docs/modules/bedops_bedmap.html
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@@ -113,47 +113,60 @@
   <header id="quarto-header" class="headroom fixed-top">
     <nav class="navbar navbar-expand-lg " data-bs-theme="dark">
       <div class="navbar-container container-fluid">
+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
             <div id="quarto-search" class="" title="Search"></div>
           <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
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 </button>
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-    <a class="nav-link" href="../../docs/index.html"> 
-<span class="menu-text">home</span></a>
-  </li>  
-  <li class="nav-item">
-    <a class="nav-link" href="../../docs/modules.html"> 
-<span class="menu-text">modules</span></a>
-  </li>  
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-      <i class="bi bi-list" role="img">
-</i> 
- <span class="menu-text"></span>
+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-home" role="link" data-bs-toggle="dropdown" aria-expanded="false">
+ <span class="menu-text">home</span>
     </a>
-    <ul class="dropdown-menu dropdown-menu-end" aria-labelledby="nav-menu-bi-list">    
+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
+        <li>
+    <a class="dropdown-item" href="../../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
+  </li>  
         <li>
     <a class="dropdown-item" href="../../.github/CONTRIBUTING.html">
  <span class="dropdown-text">Contributing</span></a>
   </li>  
         <li>
-    <a class="dropdown-item" href="../../CHANGELOG.html">
- <span class="dropdown-text">Changelog</span></a>
+    <a class="dropdown-item" href="../../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../../LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
   </li>  
     </ul>
   </li>
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
+</ul>
+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
     <a class="nav-link" href="https://github.com/CCBR/nf-modules"> <i class="bi bi-github" role="img">
 </i> 
diff --git a/docs/modules/bedtools_map.html b/docs/modules/bedtools_map.html
index bbeae4d..accaba0 100644
--- a/docs/modules/bedtools_map.html
+++ b/docs/modules/bedtools_map.html
@@ -113,47 +113,60 @@
   <header id="quarto-header" class="headroom fixed-top">
     <nav class="navbar navbar-expand-lg " data-bs-theme="dark">
       <div class="navbar-container container-fluid">
+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
             <div id="quarto-search" class="" title="Search"></div>
           <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
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 </button>
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-    <a class="nav-link" href="../../docs/index.html"> 
-<span class="menu-text">home</span></a>
-  </li>  
-  <li class="nav-item">
-    <a class="nav-link" href="../../docs/modules.html"> 
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-      <i class="bi bi-list" role="img">
-</i> 
- <span class="menu-text"></span>
+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-home" role="link" data-bs-toggle="dropdown" aria-expanded="false">
+ <span class="menu-text">home</span>
     </a>
-    <ul class="dropdown-menu dropdown-menu-end" aria-labelledby="nav-menu-bi-list">    
+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
+        <li>
+    <a class="dropdown-item" href="../../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
+  </li>  
         <li>
     <a class="dropdown-item" href="../../.github/CONTRIBUTING.html">
  <span class="dropdown-text">Contributing</span></a>
   </li>  
         <li>
-    <a class="dropdown-item" href="../../CHANGELOG.html">
- <span class="dropdown-text">Changelog</span></a>
+    <a class="dropdown-item" href="../../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../../LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
   </li>  
     </ul>
   </li>
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
+</ul>
+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
     <a class="nav-link" href="https://github.com/CCBR/nf-modules"> <i class="bi bi-github" role="img">
 </i> 
diff --git a/docs/modules/bedtools_merge.html b/docs/modules/bedtools_merge.html
index 6aaec7c..ee388c7 100644
--- a/docs/modules/bedtools_merge.html
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@@ -113,47 +113,60 @@
   <header id="quarto-header" class="headroom fixed-top">
     <nav class="navbar navbar-expand-lg " data-bs-theme="dark">
       <div class="navbar-container container-fluid">
+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
             <div id="quarto-search" class="" title="Search"></div>
           <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
   <span class="navbar-toggler-icon"></span>
 </button>
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-  <li class="nav-item">
-    <a class="nav-link" href="../../docs/index.html"> 
-<span class="menu-text">home</span></a>
-  </li>  
-  <li class="nav-item">
-    <a class="nav-link" href="../../docs/modules.html"> 
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-      <i class="bi bi-list" role="img">
-</i> 
- <span class="menu-text"></span>
+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-home" role="link" data-bs-toggle="dropdown" aria-expanded="false">
+ <span class="menu-text">home</span>
     </a>
-    <ul class="dropdown-menu dropdown-menu-end" aria-labelledby="nav-menu-bi-list">    
+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
+        <li>
+    <a class="dropdown-item" href="../../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
+  </li>  
         <li>
     <a class="dropdown-item" href="../../.github/CONTRIBUTING.html">
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   </li>  
         <li>
-    <a class="dropdown-item" href="../../CHANGELOG.html">
- <span class="dropdown-text">Changelog</span></a>
+    <a class="dropdown-item" href="../../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../../LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
   </li>  
     </ul>
   </li>
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
+</ul>
+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
     <a class="nav-link" href="https://github.com/CCBR/nf-modules"> <i class="bi bi-github" role="img">
 </i> 
diff --git a/docs/modules/bedtools_sort.html b/docs/modules/bedtools_sort.html
index f20c8fc..ba65246 100644
--- a/docs/modules/bedtools_sort.html
+++ b/docs/modules/bedtools_sort.html
@@ -113,47 +113,60 @@
   <header id="quarto-header" class="headroom fixed-top">
     <nav class="navbar navbar-expand-lg " data-bs-theme="dark">
       <div class="navbar-container container-fluid">
+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
             <div id="quarto-search" class="" title="Search"></div>
           <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
   <span class="navbar-toggler-icon"></span>
 </button>
           <div class="collapse navbar-collapse" id="navbarCollapse">
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-  <li class="nav-item">
-    <a class="nav-link" href="../../docs/index.html"> 
-<span class="menu-text">home</span></a>
-  </li>  
-  <li class="nav-item">
-    <a class="nav-link" href="../../docs/modules.html"> 
-<span class="menu-text">modules</span></a>
-  </li>  
-  <li class="nav-item">
-    <a class="nav-link" href="../../docs/subworkflows.html"> 
-<span class="menu-text">subworkflows</span></a>
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-      <i class="bi bi-list" role="img">
-</i> 
- <span class="menu-text"></span>
+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-home" role="link" data-bs-toggle="dropdown" aria-expanded="false">
+ <span class="menu-text">home</span>
     </a>
-    <ul class="dropdown-menu dropdown-menu-end" aria-labelledby="nav-menu-bi-list">    
+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
+        <li>
+    <a class="dropdown-item" href="../../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
+  </li>  
         <li>
     <a class="dropdown-item" href="../../.github/CONTRIBUTING.html">
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   </li>  
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-    <a class="dropdown-item" href="../../CHANGELOG.html">
- <span class="dropdown-text">Changelog</span></a>
+    <a class="dropdown-item" href="../../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../../LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
   </li>  
     </ul>
   </li>
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
+</ul>
+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
     <a class="nav-link" href="https://github.com/CCBR/nf-modules"> <i class="bi bi-github" role="img">
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index 38c7273..8c4945b 100644
--- a/docs/modules/bwa_index.html
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@@ -113,47 +113,60 @@
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     <nav class="navbar navbar-expand-lg " data-bs-theme="dark">
       <div class="navbar-container container-fluid">
+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
             <div id="quarto-search" class="" title="Search"></div>
           <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
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 </button>
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-  <li class="nav-item">
-    <a class="nav-link" href="../../docs/index.html"> 
-<span class="menu-text">home</span></a>
-  </li>  
-  <li class="nav-item">
-    <a class="nav-link" href="../../docs/modules.html"> 
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-  <li class="nav-item">
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-      <i class="bi bi-list" role="img">
-</i> 
- <span class="menu-text"></span>
+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-home" role="link" data-bs-toggle="dropdown" aria-expanded="false">
+ <span class="menu-text">home</span>
     </a>
-    <ul class="dropdown-menu dropdown-menu-end" aria-labelledby="nav-menu-bi-list">    
+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
+        <li>
+    <a class="dropdown-item" href="../../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
+  </li>  
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     <a class="dropdown-item" href="../../.github/CONTRIBUTING.html">
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   </li>  
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-    <a class="dropdown-item" href="../../CHANGELOG.html">
- <span class="dropdown-text">Changelog</span></a>
+    <a class="dropdown-item" href="../../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
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     <a class="dropdown-item" href="../../LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
   </li>  
     </ul>
   </li>
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
+</ul>
+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
     <a class="nav-link" href="https://github.com/CCBR/nf-modules"> <i class="bi bi-github" role="img">
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index 884c228..8d75222 100644
--- a/docs/modules/bwa_mem.html
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+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
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           <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
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 </button>
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-    <a class="nav-link" href="../../docs/index.html"> 
-<span class="menu-text">home</span></a>
-  </li>  
-  <li class="nav-item">
-    <a class="nav-link" href="../../docs/modules.html"> 
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+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-home" role="link" data-bs-toggle="dropdown" aria-expanded="false">
+ <span class="menu-text">home</span>
     </a>
-    <ul class="dropdown-menu dropdown-menu-end" aria-labelledby="nav-menu-bi-list">    
+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
+        <li>
+    <a class="dropdown-item" href="../../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
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+    <a class="dropdown-item" href="../../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
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     <a class="dropdown-item" href="../../LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
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+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
+</ul>
+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
     <a class="nav-link" href="https://github.com/CCBR/nf-modules"> <i class="bi bi-github" role="img">
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index 71a6a60..cdb555b 100644
--- a/docs/modules/cat_cat.html
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     <nav class="navbar navbar-expand-lg " data-bs-theme="dark">
       <div class="navbar-container container-fluid">
+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
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-<span class="menu-text">home</span></a>
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-      <i class="bi bi-list" role="img">
-</i> 
- <span class="menu-text"></span>
+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-home" role="link" data-bs-toggle="dropdown" aria-expanded="false">
+ <span class="menu-text">home</span>
     </a>
-    <ul class="dropdown-menu dropdown-menu-end" aria-labelledby="nav-menu-bi-list">    
+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
+        <li>
+    <a class="dropdown-item" href="../../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
+  </li>  
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     <a class="dropdown-item" href="../../.github/CONTRIBUTING.html">
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-    <a class="dropdown-item" href="../../CHANGELOG.html">
- <span class="dropdown-text">Changelog</span></a>
+    <a class="dropdown-item" href="../../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../../LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
   </li>  
     </ul>
   </li>
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
+</ul>
+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
     <a class="nav-link" href="https://github.com/CCBR/nf-modules"> <i class="bi bi-github" role="img">
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index ccd9a39..755edcd 100644
--- a/docs/modules/cat_fastq.html
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     <nav class="navbar navbar-expand-lg " data-bs-theme="dark">
       <div class="navbar-container container-fluid">
+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
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-      <i class="bi bi-list" role="img">
-</i> 
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+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-home" role="link" data-bs-toggle="dropdown" aria-expanded="false">
+ <span class="menu-text">home</span>
     </a>
-    <ul class="dropdown-menu dropdown-menu-end" aria-labelledby="nav-menu-bi-list">    
+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
+        <li>
+    <a class="dropdown-item" href="../../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
+  </li>  
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     <a class="dropdown-item" href="../../.github/CONTRIBUTING.html">
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+    <a class="dropdown-item" href="../../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../../LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
   </li>  
     </ul>
   </li>
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
+</ul>
+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
     <a class="nav-link" href="https://github.com/CCBR/nf-modules"> <i class="bi bi-github" role="img">
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     <nav class="navbar navbar-expand-lg " data-bs-theme="dark">
       <div class="navbar-container container-fluid">
+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
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-    <a class="nav-link" href="../../docs/index.html"> 
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-      <i class="bi bi-list" role="img">
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+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-home" role="link" data-bs-toggle="dropdown" aria-expanded="false">
+ <span class="menu-text">home</span>
     </a>
-    <ul class="dropdown-menu dropdown-menu-end" aria-labelledby="nav-menu-bi-list">    
+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
+        <li>
+    <a class="dropdown-item" href="../../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
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     <a class="dropdown-item" href="../../.github/CONTRIBUTING.html">
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+    <a class="dropdown-item" href="../../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../../LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
   </li>  
     </ul>
   </li>
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
+</ul>
+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
     <a class="nav-link" href="https://github.com/CCBR/nf-modules"> <i class="bi bi-github" role="img">
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     <nav class="navbar navbar-expand-lg " data-bs-theme="dark">
       <div class="navbar-container container-fluid">
+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
             <div id="quarto-search" class="" title="Search"></div>
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-    <a class="nav-link" href="../../docs/index.html"> 
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-      <i class="bi bi-list" role="img">
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- <span class="menu-text"></span>
+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-home" role="link" data-bs-toggle="dropdown" aria-expanded="false">
+ <span class="menu-text">home</span>
     </a>
-    <ul class="dropdown-menu dropdown-menu-end" aria-labelledby="nav-menu-bi-list">    
+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
+        <li>
+    <a class="dropdown-item" href="../../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
+  </li>  
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     <a class="dropdown-item" href="../../.github/CONTRIBUTING.html">
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-    <a class="dropdown-item" href="../../CHANGELOG.html">
- <span class="dropdown-text">Changelog</span></a>
+    <a class="dropdown-item" href="../../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../../LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
   </li>  
     </ul>
   </li>
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
+</ul>
+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
     <a class="nav-link" href="https://github.com/CCBR/nf-modules"> <i class="bi bi-github" role="img">
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       <div class="navbar-container container-fluid">
+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
             <div id="quarto-search" class="" title="Search"></div>
           <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
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-    <a class="nav-link" href="../../docs/index.html"> 
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-      <i class="bi bi-list" role="img">
-</i> 
- <span class="menu-text"></span>
+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-home" role="link" data-bs-toggle="dropdown" aria-expanded="false">
+ <span class="menu-text">home</span>
     </a>
-    <ul class="dropdown-menu dropdown-menu-end" aria-labelledby="nav-menu-bi-list">    
+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
+        <li>
+    <a class="dropdown-item" href="../../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
+  </li>  
         <li>
     <a class="dropdown-item" href="../../.github/CONTRIBUTING.html">
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-    <a class="dropdown-item" href="../../CHANGELOG.html">
- <span class="dropdown-text">Changelog</span></a>
+    <a class="dropdown-item" href="../../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../../LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
   </li>  
     </ul>
   </li>
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
+</ul>
+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
     <a class="nav-link" href="https://github.com/CCBR/nf-modules"> <i class="bi bi-github" role="img">
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       <div class="navbar-container container-fluid">
+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
             <div id="quarto-search" class="" title="Search"></div>
           <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
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+    <a class="dropdown-item" href="../../docs/index.html">
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+    <a class="dropdown-item" href="../../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
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+    <a class="nav-link" href="../../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
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+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
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+    <span class="navbar-title">nf-modules</span>
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+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
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+    <a class="dropdown-item" href="../../docs/index.html">
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+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
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+ <span class="dropdown-text">Citation</span></a>
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+    <a class="dropdown-item" href="../../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
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     <a class="dropdown-item" href="../../LICENSE.html">
  <span class="dropdown-text">License</span></a>
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+    <a class="dropdown-item" href="../../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
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+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
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+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
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+    <a class="navbar-brand" href="../../index.html">
+    <span class="navbar-title">nf-modules</span>
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+    <a class="dropdown-item" href="../../docs/index.html">
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+ <span class="dropdown-text">Contributors</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../../LICENSE.html">
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+    <a class="dropdown-item" href="../../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
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+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
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+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
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+    <a class="navbar-brand" href="../../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
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+    <a class="dropdown-item" href="../../docs/index.html">
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+    <a class="dropdown-item" href="../../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
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     <a class="dropdown-item" href="../../LICENSE.html">
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+        <li>
+    <a class="dropdown-item" href="../../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
   </li>  
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+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
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+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
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+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
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+        <li>
+    <a class="dropdown-item" href="../../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
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+    <a class="dropdown-item" href="../../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../../LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
   </li>  
     </ul>
   </li>
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
+</ul>
+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
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+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
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           <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
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+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
+        <li>
+    <a class="dropdown-item" href="../../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
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+    <a class="dropdown-item" href="../../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../../LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
   </li>  
     </ul>
   </li>
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
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+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
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+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../../index.html">
+    <span class="navbar-title">nf-modules</span>
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-      <i class="bi bi-list" role="img">
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+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-home" role="link" data-bs-toggle="dropdown" aria-expanded="false">
+ <span class="menu-text">home</span>
     </a>
-    <ul class="dropdown-menu dropdown-menu-end" aria-labelledby="nav-menu-bi-list">    
+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
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+    <a class="dropdown-item" href="../../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
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+    <a class="dropdown-item" href="../../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
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     <a class="dropdown-item" href="../../LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
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+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
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+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
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     <nav class="navbar navbar-expand-lg " data-bs-theme="dark">
       <div class="navbar-container container-fluid">
+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
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-      <i class="bi bi-list" role="img">
-</i> 
- <span class="menu-text"></span>
+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-home" role="link" data-bs-toggle="dropdown" aria-expanded="false">
+ <span class="menu-text">home</span>
     </a>
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+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
+        <li>
+    <a class="dropdown-item" href="../../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
+  </li>  
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     <a class="dropdown-item" href="../../.github/CONTRIBUTING.html">
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+    <a class="dropdown-item" href="../../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../../LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
   </li>  
     </ul>
   </li>
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
+</ul>
+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
     <a class="nav-link" href="https://github.com/CCBR/nf-modules"> <i class="bi bi-github" role="img">
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index 90a6399..f28da80 100644
--- a/docs/modules/samtools_flagstat.html
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       <div class="navbar-container container-fluid">
+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
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+ <span class="menu-text">home</span>
     </a>
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+        <li>
+    <a class="dropdown-item" href="../../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
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+    <a class="dropdown-item" href="../../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
+  </li>  
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     <a class="dropdown-item" href="../../.github/CONTRIBUTING.html">
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- <span class="dropdown-text">Changelog</span></a>
+    <a class="dropdown-item" href="../../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../../LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
   </li>  
     </ul>
   </li>
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
+</ul>
+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
     <a class="nav-link" href="https://github.com/CCBR/nf-modules"> <i class="bi bi-github" role="img">
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index 7ae5d99..9890005 100644
--- a/docs/modules/samtools_sort.html
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@@ -113,47 +113,60 @@
   <header id="quarto-header" class="headroom fixed-top">
     <nav class="navbar navbar-expand-lg " data-bs-theme="dark">
       <div class="navbar-container container-fluid">
+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
             <div id="quarto-search" class="" title="Search"></div>
           <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
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-    <a class="nav-link" href="../../docs/index.html"> 
-<span class="menu-text">home</span></a>
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-      <i class="bi bi-list" role="img">
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+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-home" role="link" data-bs-toggle="dropdown" aria-expanded="false">
+ <span class="menu-text">home</span>
     </a>
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+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
+        <li>
+    <a class="dropdown-item" href="../../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
+  </li>  
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     <a class="dropdown-item" href="../../.github/CONTRIBUTING.html">
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   </li>  
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- <span class="dropdown-text">Changelog</span></a>
+    <a class="dropdown-item" href="../../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../../LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
   </li>  
     </ul>
   </li>
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
+</ul>
+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
     <a class="nav-link" href="https://github.com/CCBR/nf-modules"> <i class="bi bi-github" role="img">
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index f302e63..f994a6a 100644
--- a/docs/modules/sort_bed.html
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@@ -113,47 +113,60 @@
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     <nav class="navbar navbar-expand-lg " data-bs-theme="dark">
       <div class="navbar-container container-fluid">
+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
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-    <a class="nav-link" href="../../docs/index.html"> 
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-      <i class="bi bi-list" role="img">
-</i> 
- <span class="menu-text"></span>
+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-home" role="link" data-bs-toggle="dropdown" aria-expanded="false">
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     </a>
-    <ul class="dropdown-menu dropdown-menu-end" aria-labelledby="nav-menu-bi-list">    
+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
+        <li>
+    <a class="dropdown-item" href="../../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
+  </li>  
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     <a class="dropdown-item" href="../../.github/CONTRIBUTING.html">
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   </li>  
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- <span class="dropdown-text">Changelog</span></a>
+    <a class="dropdown-item" href="../../docs/contributors.html">
+ <span class="dropdown-text">Contributors</span></a>
   </li>  
         <li>
     <a class="dropdown-item" href="../../LICENSE.html">
  <span class="dropdown-text">License</span></a>
+  </li>  
+        <li>
+    <a class="dropdown-item" href="../../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
   </li>  
     </ul>
   </li>
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/modules.html"> 
+<span class="menu-text">modules</span></a>
+  </li>  
+  <li class="nav-item">
+    <a class="nav-link" href="../../docs/subworkflows.html"> 
+<span class="menu-text">subworkflows</span></a>
+  </li>  
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+            <ul class="navbar-nav navbar-nav-scroll ms-auto">
   <li class="nav-item compact">
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index 97d3d80..8fe4a43 100644
--- a/docs/subworkflows.html
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     <nav class="navbar navbar-expand-lg " data-bs-theme="dark">
       <div class="navbar-container container-fluid">
+      <div class="navbar-brand-container mx-auto">
+    <a class="navbar-brand" href="../index.html">
+    <span class="navbar-title">nf-modules</span>
+    </a>
+  </div>
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           <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
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-      <i class="bi bi-list" role="img">
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+    <a class="nav-link dropdown-toggle" href="#" id="nav-menu-home" role="link" data-bs-toggle="dropdown" aria-expanded="false">
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+    <ul class="dropdown-menu" aria-labelledby="nav-menu-home">    
+        <li>
+    <a class="dropdown-item" href="../docs/index.html">
+ <span class="dropdown-text">home</span></a>
+  </li>  
+        <li><hr class="dropdown-divider"></li>
+        <li class="dropdown-header">project info</li>
+        <li>
+    <a class="dropdown-item" href="../docs/cite.html">
+ <span class="dropdown-text">Citation</span></a>
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     <a class="dropdown-item" href="../.github/CONTRIBUTING.html">
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+ <span class="dropdown-text">Contributors</span></a>
   </li>  
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     <a class="dropdown-item" href="../LICENSE.html">
  <span class="dropdown-text">License</span></a>
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+        <li>
+    <a class="dropdown-item" href="../CHANGELOG.html">
+ <span class="dropdown-text">Changelog</span></a>
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   </li>
+  <li class="nav-item">
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+<span class="menu-text">modules</span></a>
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+    <a class="nav-link" href="../../docs/subworkflows.html"> 
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-    "text": "MIT License\nCopyright (c) 2023 CCR Collaborative Bioinformatics Resource\nPermission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:\nThe above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.\nTHE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE."
+    "text": "MIT License\nCopyright (c) 2023 CCR Collaborative Bioinformatics Resource\nPermission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:\nThe above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.\nTHE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.",
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-    "text": "Reusable modules and subworkflows for Nextflow pipelines\n  \n\n\nTo re-use a module in your nextflow pipeline, first install nf-core tools, then run\nnf-core modules \\\n  --git-remote https://github.com/CCBR/nf-modules \\\n  install [module]\nreplacing [module] with the name of the module you wish to install.\nTo update your local version of a module, run\nnf-core modules \\\n  --git-remote https://github.com/CCBR/nf-modules \\\n  update [module]\nUse the subworkflows command in place of the modules command to install or update subworkflows.\nnf-core subworkflows \\\n  --git-remote https://github.com/CCBR/nf-modules \\\n  update [subworkflow]\n\n\n\nCome across a bug? Open an issue and include a minimal reproducible example.\nHave a question? Ask it in discussions.\nWant to contribute to this project? Check out the contributing guidelines.\n\n\n\nMany of the modules and subworkflows in this project reuse and adapt code from nf-core/modules. In those cases, credit is noted in the meta.yml file of the module/subworkflow and also listed here:\n\nbedtools adapts the nf-core bedtools module\nbwa adapts the nf-core bwa module\ncat adapts the nf-core cat module\ncutadapt adapts the nf-core cutadapt module\nkhmer adapts the nf-core khmer module\npicard/samtofastq adapts the nf-core gatk4 samtofastq module\nsamtools/sort adapts the nf-core samtools sort module"
+    "text": "Reusable modules and subworkflows for Nextflow pipelines\n  \n\n\nTo re-use a module in your nextflow pipeline, first install nf-core tools, then run\nnf-core modules \\\n  --git-remote https://github.com/CCBR/nf-modules \\\n  install [module]\nreplacing [module] with the name of the module you wish to install.\nTo update your local version of a module, run\nnf-core modules \\\n  --git-remote https://github.com/CCBR/nf-modules \\\n  update [module]\nUse the subworkflows command in place of the modules command to install or update subworkflows.\nnf-core subworkflows \\\n  --git-remote https://github.com/CCBR/nf-modules \\\n  update [subworkflow]\nView listings of available modules and subworkflows on the documentation website.\n\n\n\nCome across a bug? Open an issue and include a minimal reproducible example.\nHave a question? Ask it in discussions.\nWant to contribute to this project? Check out the contributing guidelines.\n\n\n\nMany of the modules and subworkflows in this project reuse and adapt code from nf-core/modules. In those cases, credit is noted in the meta.yml file of the module/subworkflow and also listed here:\n\nbedtools adapts the nf-core bedtools module\nbwa adapts the nf-core bwa module\ncat adapts the nf-core cat module\ncutadapt adapts the nf-core cutadapt module\nkhmer adapts the nf-core khmer module\npicard/samtofastq adapts the nf-core gatk4 samtofastq module\nsamtools/sort adapts the nf-core samtools sort module",
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-    "text": "To re-use a module in your nextflow pipeline, first install nf-core tools, then run\nnf-core modules \\\n  --git-remote https://github.com/CCBR/nf-modules \\\n  install [module]\nreplacing [module] with the name of the module you wish to install.\nTo update your local version of a module, run\nnf-core modules \\\n  --git-remote https://github.com/CCBR/nf-modules \\\n  update [module]\nUse the subworkflows command in place of the modules command to install or update subworkflows.\nnf-core subworkflows \\\n  --git-remote https://github.com/CCBR/nf-modules \\\n  update [subworkflow]"
+    "text": "To re-use a module in your nextflow pipeline, first install nf-core tools, then run\nnf-core modules \\\n  --git-remote https://github.com/CCBR/nf-modules \\\n  install [module]\nreplacing [module] with the name of the module you wish to install.\nTo update your local version of a module, run\nnf-core modules \\\n  --git-remote https://github.com/CCBR/nf-modules \\\n  update [module]\nUse the subworkflows command in place of the modules command to install or update subworkflows.\nnf-core subworkflows \\\n  --git-remote https://github.com/CCBR/nf-modules \\\n  update [subworkflow]\nView listings of available modules and subworkflows on the documentation website.",
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-    "text": "Come across a bug? Open an issue and include a minimal reproducible example.\nHave a question? Ask it in discussions.\nWant to contribute to this project? Check out the contributing guidelines."
+    "text": "Come across a bug? Open an issue and include a minimal reproducible example.\nHave a question? Ask it in discussions.\nWant to contribute to this project? Check out the contributing guidelines.",
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-    "text": "Many of the modules and subworkflows in this project reuse and adapt code from nf-core/modules. In those cases, credit is noted in the meta.yml file of the module/subworkflow and also listed here:\n\nbedtools adapts the nf-core bedtools module\nbwa adapts the nf-core bwa module\ncat adapts the nf-core cat module\ncutadapt adapts the nf-core cutadapt module\nkhmer adapts the nf-core khmer module\npicard/samtofastq adapts the nf-core gatk4 samtofastq module\nsamtools/sort adapts the nf-core samtools sort module"
+    "text": "Many of the modules and subworkflows in this project reuse and adapt code from nf-core/modules. In those cases, credit is noted in the meta.yml file of the module/subworkflow and also listed here:\n\nbedtools adapts the nf-core bedtools module\nbwa adapts the nf-core bwa module\ncat adapts the nf-core cat module\ncutadapt adapts the nf-core cutadapt module\nkhmer adapts the nf-core khmer module\npicard/samtofastq adapts the nf-core gatk4 samtofastq module\nsamtools/sort adapts the nf-core samtools sort module",
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+    "text": "Please cite this software if you use it in a publication:\n\nSovacool K., Koparde V. (2023). nf-modules: Reusable modules and subworkflows for CCBR Nextflow pipelines (version v0.1.0). DOI: 10.5281/zenodo.10223357 URL: https://CCBR.github.io/nf-modules/\n\n\nBibtex entry\n@misc{YourReferenceHere,\nauthor = {Sovacool, Kelly and Koparde, Vishal},\ndoi = {10.5281/zenodo.10223357},\nmonth = {11},\ntitle = {nf-modules: Reusable modules and subworkflows for CCBR Nextflow pipelines},\nurl = {https://CCBR.github.io/nf-modules/},\nyear = {2023}\n}",
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+    "text": "Kelly Sovacool, PhD\n\n\n\n\n\nView the contributors graph on GitHub for more details.",
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+    "text": "bedops/bedmap (#37)\nbedtools/map (#37)\nbedtools/merge (#37,#39)\nbedtools/sort (#37)\ncat/cat (#37)\ncat/fastq (#37)\ncustom/combinepeakcounts (#37)\ncustom/consensuspeaks (#37)\ncustom/formatmergedbed (#39,#41)\ncustom/normalizepeaks (#37,#39,#41)\nsort/bed (#39)\n\n\n\n\n\nconsensus_peaks (#37,#39)",
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+    "text": "bedops/bedmap (#37)\nbedtools/map (#37)\nbedtools/merge (#37,#39)\nbedtools/sort (#37)\ncat/cat (#37)\ncat/fastq (#37)\ncustom/combinepeakcounts (#37)\ncustom/consensuspeaks (#37)\ncustom/formatmergedbed (#39,#41)\ncustom/normalizepeaks (#37,#39,#41)\nsort/bed (#39)\n\n\n\n\n\nconsensus_peaks (#37,#39)",
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     "section": "nf-modules 0.1.0",
-    "text": "nf-modules 0.1.0\nOur documentation website is now live: https://ccbr.github.io/nf-modules/ (#16)\n\nNew modules\n\nbwa/index\nbwa/mem\n\nalso runs samtools sort & outputs index in bai format. (#12)\n\ncustom/bam2fastq (#14,#22)\ncustom/convertsicer (#36)\ncustom/countfastq (#32)\ncutadapt (#11)\nkhmer/uniquekmers (#7)\npicard/samtofastq (#21)\nsamtools/filteraligned (#13,#20)\nsamtools/sort (#24,#28)\n\n\n\nNew subworkflows\n\nfilter_blacklist (#17,#27)"
+    "text": "nf-modules 0.1.0\nOur documentation website is now live: https://ccbr.github.io/nf-modules/ (#16)\n\nNew modules\n\nbwa/index\nbwa/mem\n\nalso runs samtools sort & outputs index in bai format. (#12)\n\ncustom/bam2fastq (#14,#22)\ncustom/convertsicer (#36)\ncustom/countfastq (#32)\ncutadapt (#11)\nkhmer/uniquekmers (#7)\npicard/samtofastq (#21)\nsamtools/filteraligned (#13,#20)\nsamtools/sort (#24,#28)\n\n\n\nNew subworkflows\n\nfilter_blacklist (#17,#27)",
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-    "text": "Create a new module with:\nnf-core modules create\nFollow the prompts to name the module, set author information, etc. Then edit the meta.yml and main.nf files as needed.\n\n\nOnce you’ve written or updated a module under modules/CCBR/[module-name] and a test workflow under tests/modules/CCBR/[module-name], then use nf-core tools to automatically create a test YAML file with:\nnf-core modules create-test-yml [module-name] --run-tests --force --no-prompts\nAdd the module to tests/config/pytest_modules.yml\nRun the tests with:\nPROFILE=docker nf-core modules test [module-name] --no-prompts\n\n\n\nPre-commit can automatically format your code, check for spelling errors, etc. every time you commit.\nInstall pre-commit if you haven’t already, then run pre-commit install to install the hooks specified in .pre-commit-config.yaml. Pre-commit will run the hooks every time you commit.\n\n\n\nKeep the changelog up to date with all notable changes in CHANGELOG.md1.\n\n\n\nIf you use VS code, installing nf-core extension pack is recommended."
+    "text": "Create a new module with:\nnf-core modules create\nFollow the prompts to name the module, set author information, etc. Then edit the meta.yml and main.nf files as needed.\n\n\nOnce you’ve written or updated a module under modules/CCBR/[module-name] and a test workflow under tests/modules/CCBR/[module-name], then use nf-core tools to automatically create a test YAML file with:\nnf-core modules create-test-yml [module-name] --run-tests --force --no-prompts\nAdd the module to tests/config/pytest_modules.yml\nRun the tests with:\nPROFILE=docker nf-core modules test [module-name] --no-prompts\n\n\n\nPre-commit can automatically format your code, check for spelling errors, etc. every time you commit.\nInstall pre-commit if you haven’t already, then run pre-commit install to install the hooks specified in .pre-commit-config.yaml. Pre-commit will run the hooks every time you commit.\n\n\n\nKeep the changelog up to date with all notable changes in CHANGELOG.md1.\n\n\n\nIf you use VS code, installing nf-core extension pack is recommended.",
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+    "text": "Once you’ve written or updated a module under modules/CCBR/[module-name] and a test workflow under tests/modules/CCBR/[module-name], then use nf-core tools to automatically create a test YAML file with:\nnf-core modules create-test-yml [module-name] --run-tests --force --no-prompts\nAdd the module to tests/config/pytest_modules.yml\nRun the tests with:\nPROFILE=docker nf-core modules test [module-name] --no-prompts",
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+    "text": "Pre-commit can automatically format your code, check for spelling errors, etc. every time you commit.\nInstall pre-commit if you haven’t already, then run pre-commit install to install the hooks specified in .pre-commit-config.yaml. Pre-commit will run the hooks every time you commit.",
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diff --git a/sitemap.xml b/sitemap.xml
index 3e9b4be..46d89e5 100644
--- a/sitemap.xml
+++ b/sitemap.xml
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   <url>
     <loc>https://ccbr.github.io/nf-modules/LICENSE.html</loc>
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-    <lastmod>2024-12-30T22:29:30.449Z</lastmod>
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   <url>
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-    <lastmod>2024-12-30T22:22:20.107Z</lastmod>
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-    <lastmod>2024-12-30T22:29:30.423Z</lastmod>
+    <lastmod>2024-12-30T23:47:21.423Z</lastmod>
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     <loc>https://ccbr.github.io/nf-modules/docs/modules/samtools_filteraligned.html</loc>
-    <lastmod>2024-12-30T22:29:30.432Z</lastmod>
+    <lastmod>2024-12-30T23:47:21.431Z</lastmod>
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     <loc>https://ccbr.github.io/nf-modules/docs/modules/khmer_uniquekmers.html</loc>
-    <lastmod>2024-12-30T22:29:30.442Z</lastmod>
+    <lastmod>2024-12-30T23:47:21.441Z</lastmod>
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     <loc>https://ccbr.github.io/nf-modules/docs/modules/custom_normalizepeaks.html</loc>
-    <lastmod>2024-12-30T22:29:30.315Z</lastmod>
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     <loc>https://ccbr.github.io/nf-modules/docs/modules/custom_countfastq.html</loc>
-    <lastmod>2024-12-30T22:29:30.324Z</lastmod>
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     <loc>https://ccbr.github.io/nf-modules/docs/modules/custom_combinepeakcounts.html</loc>
-    <lastmod>2024-12-30T22:29:30.260Z</lastmod>
+    <lastmod>2024-12-30T23:47:21.265Z</lastmod>
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   <url>
     <loc>https://ccbr.github.io/nf-modules/docs/modules/convert_sicer.html</loc>
-    <lastmod>2024-12-30T22:29:30.305Z</lastmod>
+    <lastmod>2024-12-30T23:47:21.309Z</lastmod>
   </url>
   <url>
     <loc>https://ccbr.github.io/nf-modules/docs/modules/cat_cat.html</loc>
-    <lastmod>2024-12-30T22:29:30.401Z</lastmod>
+    <lastmod>2024-12-30T23:47:21.401Z</lastmod>
   </url>
   <url>
     <loc>https://ccbr.github.io/nf-modules/docs/modules/bwa_index.html</loc>
-    <lastmod>2024-12-30T22:29:30.364Z</lastmod>
+    <lastmod>2024-12-30T23:47:21.365Z</lastmod>
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     <loc>https://ccbr.github.io/nf-modules/docs/modules/bedtools_merge.html</loc>
-    <lastmod>2024-12-30T22:29:30.251Z</lastmod>
+    <lastmod>2024-12-30T23:47:21.257Z</lastmod>
   </url>
   <url>
     <loc>https://ccbr.github.io/nf-modules/docs/modules/bedops_bedmap.html</loc>
-    <lastmod>2024-12-30T22:29:30.374Z</lastmod>
+    <lastmod>2024-12-30T23:47:21.375Z</lastmod>
   </url>
   <url>
     <loc>https://ccbr.github.io/nf-modules/docs/index.html</loc>
-    <lastmod>2024-12-30T22:22:20.107Z</lastmod>
+    <lastmod>2024-12-30T23:45:54.108Z</lastmod>
+  </url>
+  <url>
+    <loc>https://ccbr.github.io/nf-modules/docs/cite.html</loc>
+    <lastmod>2024-12-30T23:45:54.108Z</lastmod>
+  </url>
+  <url>
+    <loc>https://ccbr.github.io/nf-modules/docs/contributors.html</loc>
+    <lastmod>2024-12-30T23:45:54.108Z</lastmod>
   </url>
   <url>
     <loc>https://ccbr.github.io/nf-modules/docs/modules.html</loc>
-    <lastmod>2024-12-30T22:22:20.107Z</lastmod>
+    <lastmod>2024-12-30T23:45:54.108Z</lastmod>
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     <loc>https://ccbr.github.io/nf-modules/docs/modules/bedtools_map.html</loc>
-    <lastmod>2024-12-30T22:29:30.226Z</lastmod>
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     <loc>https://ccbr.github.io/nf-modules/docs/modules/bedtools_sort.html</loc>
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+    <lastmod>2024-12-30T23:47:21.356Z</lastmod>
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-    <lastmod>2024-12-30T22:29:30.392Z</lastmod>
+    <lastmod>2024-12-30T23:47:21.393Z</lastmod>
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     <loc>https://ccbr.github.io/nf-modules/docs/modules/custom_bam2fastq.html</loc>
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   <url>
     <loc>https://ccbr.github.io/nf-modules/docs/modules/cutadapt.html</loc>
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+    <lastmod>2024-12-30T23:47:21.346Z</lastmod>
   </url>
   <url>
     <loc>https://ccbr.github.io/nf-modules/docs/modules/samtools_flagstat.html</loc>
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+    <lastmod>2024-12-30T23:47:21.412Z</lastmod>
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     <loc>https://ccbr.github.io/nf-modules/docs/modules/sort_bed.html</loc>
-    <lastmod>2024-12-30T22:29:30.383Z</lastmod>
+    <lastmod>2024-12-30T23:47:21.384Z</lastmod>
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   <url>
     <loc>https://ccbr.github.io/nf-modules/docs/subworkflows/consensus_peaks.html</loc>
-    <lastmod>2024-12-30T22:29:30.458Z</lastmod>
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   </url>
   <url>
     <loc>https://ccbr.github.io/nf-modules/CHANGELOG.html</loc>
-    <lastmod>2024-12-30T22:22:20.070Z</lastmod>
+    <lastmod>2024-12-30T23:45:54.070Z</lastmod>
   </url>
   <url>
     <loc>https://ccbr.github.io/nf-modules/.github/CONTRIBUTING.html</loc>
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