diff --git a/tests/gtf2gtf.py/hg19.small.sort_gene_rename_transcript.gtf.gz b/tests/gtf2gtf.py/hg19.small.sort_gene_rename_transcript.gtf.gz deleted file mode 100644 index 05419731..00000000 Binary files a/tests/gtf2gtf.py/hg19.small.sort_gene_rename_transcript.gtf.gz and /dev/null differ diff --git a/tests/gtf2gtf.py/hg19.small.sort_gene_rename_transcripts.gtf.gz b/tests/gtf2gtf.py/hg19.small.sort_gene_rename_transcripts.gtf.gz new file mode 100644 index 00000000..00384f3d Binary files /dev/null and b/tests/gtf2gtf.py/hg19.small.sort_gene_rename_transcripts.gtf.gz differ diff --git a/tests/gtf2gtf.py/tests.yaml b/tests/gtf2gtf.py/tests.yaml index 3f72b2c9..19bca486 100644 --- a/tests/gtf2gtf.py/tests.yaml +++ b/tests/gtf2gtf.py/tests.yaml @@ -181,11 +181,11 @@ rename_gene: references: [hg19.small.sort_gene_rename.gtf.gz] options: --method=rename-genes --map-tsv-file=/hg19.small.gene_map.tsv -rename_transcript: +rename_transcripts: stdin: hg19.small.sort_gene.gtf.gz outputs: [stdout] - references: [hg19.small.sort_gene_rename_transcript.gtf.gz] - options: --method=rename-genes --map-tsv-file=/hg19.small.transcript_map.tsv + references: [hg19.small.sort_gene_rename_transcripts.gtf.gz] + options: --method=rename-transcripts --map-tsv-file=/hg19.small.transcript_map.tsv add_protein_id: stdin: hg19.small.sort_gene.gtf.gz