From 8082f786701b4b9dfee842bb3890dc26c80c8c3b Mon Sep 17 00:00:00 2001
From: Sebastian Luna Valero <sebastian.luna.valero@gmail.com>
Date: Mon, 27 Nov 2017 15:53:42 +0000
Subject: [PATCH] allow multi-threaded sqlite3 operations

---
 CGAT/CSV2DB.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/CGAT/CSV2DB.py b/CGAT/CSV2DB.py
index 93ff6ce3..3b1ebb75 100644
--- a/CGAT/CSV2DB.py
+++ b/CGAT/CSV2DB.py
@@ -300,7 +300,7 @@ def run(infile, options, report_step=10000):
 
     elif options.backend == "sqlite":
         import sqlite3
-        dbhandle = sqlite3.connect(options.database_name)
+        dbhandle = sqlite3.connect(options.database_name, check_same_thread=False)
         try:
             os.chmod(options.database_name, 0o664)
         except OSError as msg: