Fix Github Actions for macos system update #764
Workflow file for this run
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| name: GHActions | |
| # This workflow is triggered on pushes, pull-requeust, and releases | |
| # ghactions* branch names will trigger this to support development testing | |
| # To Do: get it working with bash and ubuntu | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - 'CICE*' | |
| - 'ghactions*' | |
| pull_request: | |
| release: | |
| types: | |
| - created | |
| defaults: | |
| run: | |
| shell: /bin/csh -e {0} | |
| jobs: | |
| build: | |
| name: "CICETesting" | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| # os: [macos-latest, ubuntu-latest] | |
| os: [macos-latest] | |
| # os: [macos-13] | |
| # os: [ubuntu-latest] | |
| include: | |
| # - os: macos-13 | |
| # envdef: macos | |
| # minicond: Miniconda3-latest-MacOSX-x86_64.sh | |
| - os: macos-latest | |
| envdef: macos | |
| minicond: Miniconda3-latest-MacOSX-x86_64.sh | |
| # - os: ubuntu-latest | |
| # envdef: linux | |
| # minicond: Miniconda3-latest-Linux-x86_64.sh | |
| steps: | |
| - name: reset macos toolchain to commandlinetools | |
| shell: /bin/bash {0} | |
| if: contains( matrix.envdef, 'macos') | |
| run: | | |
| sudo xcode-select -r | |
| sudo xcode-select -s /Library/Developer/CommandLineTools | |
| sudo ln -s /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/* /usr/local/include/ | |
| echo "xcrun --show-sdk-path: $(xcrun --show-sdk-path)" | |
| echo "xcode-select -p: $(xcode-select -p)" | |
| - name: system info | |
| shell: /bin/bash {0} | |
| run: | | |
| type wget | |
| type curl | |
| type csh | |
| echo "readlink \$(which csh): $(python -c 'import os, sys; print os.path.realpath(sys.argv[1])' $(which csh))" | |
| echo "csh --version: $(csh --version)" | |
| echo "uname -a: $(uname -a)" | |
| echo "sw_vers: $(sw_vers)" | |
| echo "HOME: $HOME" | |
| echo "GITHUB_WORKSPACE: $GITHUB_WORKSPACE" | |
| echo "OS: ${{ matrix.os }}" | |
| echo "ENVDEF: ${{ matrix.envdef }}" | |
| echo "MINICOND: ${{ matrix.minicond }}" | |
| - name : install miniconda | |
| shell: /bin/bash {0} | |
| run: | | |
| wget https://repo.anaconda.com/miniconda/${{ matrix.minicond }} -O ~/miniconda.sh | |
| bash ~/miniconda.sh -b -p $HOME/miniconda | |
| - name: clone | |
| uses: actions/checkout@v2 | |
| with: | |
| submodules: 'recursive' | |
| - name: link | |
| run: | | |
| ln -s ${GITHUB_WORKSPACE}/../CICE ${HOME}/cice | |
| # ls -al ${HOME}/ | |
| # ls -al ${GITHUB_WORKSPACE}/ | |
| - name: check for tabs | |
| run: | | |
| cd $HOME/cice/cicecore | |
| set cnt = 0 | |
| set ffiles = `find -P . -iname "*.f*"` | |
| set cfiles = `find -P . -iname "*.c*"` | |
| foreach file ($ffiles $cfiles) | |
| set fcnt = `sed -n '/\t/p' $file | wc -l` | |
| @ cnt = $cnt + $fcnt | |
| if ($fcnt > 0) then | |
| echo "TAB found: $fcnt $file" | |
| endif | |
| end | |
| exit $cnt | |
| - name: setup conda env | |
| shell: /bin/bash {0} | |
| run: | | |
| cd $HOME && mkdir -p cice-dirs/runs cice-dirs/baseline cice-dirs/input | |
| source $HOME/miniconda/bin/activate | |
| conda init tcsh | |
| cd $HOME/cice | |
| conda env create -f configuration/scripts/machines/environment.yml | |
| - name: check conda env | |
| run: | | |
| conda activate cice && which clang && which gfortran && which mpicc && which mpifort && which make | |
| clang --version | |
| gfortran --version | |
| mpifort --version | |
| mpicc --version | |
| make --version | |
| # echo "mpifort -v:" | |
| # mpifort -v | |
| # echo "mpifort --showme:compile:" | |
| # mpifort --showme:compile | |
| # echo "mpifort --showme:link:" | |
| # mpifort --showme:link | |
| # echo "mpifort --showme:command:" | |
| # mpifort --showme:command | |
| # echo "mpifort --showme:libdirs:" | |
| # mpifort --showme:libdirs | |
| # echo "mpifort --showme:libs:" | |
| # mpifort --showme:libs | |
| # echo "mpifort --showme:incdirs:" | |
| # mpifort --showme:incdirs | |
| - name: check setup case | |
| run: | | |
| cd $HOME/cice | |
| ./cice.setup -m conda -e ${{ matrix.envdef }} -c case0 --pes 1x1 -s diag1 | |
| - name: check setup test | |
| run: | | |
| cd $HOME/cice | |
| ./cice.setup -m conda -e ${{ matrix.envdef }} --test smoke --testid c0 | |
| - name: run hello world unit test | |
| run: | | |
| cd $HOME/cice | |
| ./cice.setup -m conda -e ${{ matrix.envdef }} --test unittest --pes 2x1 -s helloworld --testid hw01 | |
| cd *helloworld*hw01 | |
| ./cice.build | |
| ./cice.run | |
| - name: check cice compile | |
| run: | | |
| cd $HOME/cice | |
| ./cice.setup -m conda -e ${{ matrix.envdef }} -c case1 --pes 2x2 -s diag1 | |
| cd case1 | |
| ./cice.build | |
| - name: download input data | |
| run: | | |
| cd $HOME/cice-dirs/input | |
| wget --progress=dot:giga https://zenodo.org/record/3728358/files/CICE_data_gx3_grid_ic-20200320.tar.gz && tar xvfz CICE_data_gx3_grid_ic-20200320.tar.gz | |
| wget --progress=dot:giga https://zenodo.org/records/10419929/files/CICE_data_gx3_forcing_JRA55_200501_20231220.tar.gz && tar xvfz CICE_data_gx3_forcing_JRA55_200501_20231220.tar.gz | |
| pwd | |
| cd CICE_data/forcing/gx3/JRA55/8XDAILY | |
| ln -s JRA55_gx3_03hr_forcing_200501.nc JRA55_gx3_03hr_forcing_2005.nc | |
| cd $HOME/cice-dirs/input | |
| ls -alR | |
| # - name: run case | |
| # run: | | |
| # cd $HOME/cice | |
| # cd case1 | |
| # ./cice.run | |
| - name: run suite | |
| run: | | |
| cd $HOME/cice | |
| ./cice.setup -m conda -e ${{ matrix.envdef }} --suite travis_suite --testid ${{ matrix.os }} | |
| - name: write output | |
| run: | | |
| cd $HOME/cice | |
| ./.github/workflows/write_logfiles.csh | |
| cd testsuite.${{ matrix.os }} | |
| ./results.csh | |
| - name: successful run | |
| if: ${{ success() }} | |
| run: | | |
| echo "${{ job.name }} PASSED" | |
| - name: trap failure | |
| if: ${{ failure() }} | |
| run: | | |
| echo "${{ job.name }} FAILED" | |
| exit 99 |