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Script to filter several FIFF files from MEGIN TRIUX MEG machines sequentially with a GUI

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CIMH-Clinical-Psychology/MaxFilter-multifile

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MaxFilter-multifile

Script to filter several FIFF files from MEGIN TRIUX MEG machines sequentially with a GUI.

MaxFilter™ can only filter one FIFF file at a time. That is annoying if you have recordings with several sessions. This simple Python script offers a GUI solution (using easygui) to filter as many FIFF files as you want, given that they all need the same parameters.

You can select between

  • SSS or tSSS
  • Movement compensation or none
  • Head position transformation to initial, default or from another FIFF file
  • Bad channel detection (not recommended for tSSS artefacts such as braces)
  • Optionally it can move the files after filtering to a specific location (customized to our setup, you would need to change the last lines of the script.)

Requirements:**

  • pip install easygui
  • Any Python>=3.5 should work.

Then simply run python maxfilter_multifile.py

You might need to adapt some paths, i.e. the path to the maxfilter binary file and your data storage.

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Script to filter several FIFF files from MEGIN TRIUX MEG machines sequentially with a GUI

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