From 5fca6bb90e7e4403f72e10cd3627cce1f17aa668 Mon Sep 17 00:00:00 2001 From: dvvanessastoiber Date: Mon, 21 Mar 2022 11:55:47 +0100 Subject: [PATCH 1/2] config changes --- jest.config.js | 1 + package.json | 12 ++++++------ typedoc.json | 12 ++---------- 3 files changed, 9 insertions(+), 16 deletions(-) diff --git a/jest.config.js b/jest.config.js index a5d8e51..81a457d 100644 --- a/jest.config.js +++ b/jest.config.js @@ -16,6 +16,7 @@ if(pluginsToTransform.length > 0) { * see also https://jestjs.io/docs/en/webpack#mocking-css-modules */ module.exports = { + testEnvironment: 'jsdom', transform: { "^.+\\.(js|ts|tsx)$": "ts-jest", "\\.xml$": "jest-raw-loader" diff --git a/package.json b/package.json index b65374c..8594938 100644 --- a/package.json +++ b/package.json @@ -54,7 +54,6 @@ }, "devDependencies": { "@types/d3": "~3.5.36", - "@types/jest": "~26.0.20", "@types/jquery": "~3.5.5", "@typescript-eslint/eslint-plugin": "^5.9.0", "@typescript-eslint/parser": "^5.9.0", @@ -69,15 +68,16 @@ "eslint-plugin-react": "^7.28.0", "eslint-plugin-react-hooks": "^4.3.0", "identity-obj-proxy": "~3.0.0", - "jest": "~26.6.3", "jest-raw-loader": "~1.0.1", "prettier": "^2.5.1", "rimraf": "~3.0.2", "shx": "~0.3.3", - "ts-jest": "~26.4.4", - "tslib": "~2.0.3", - "typedoc": "~0.19.2", - "typescript": "~3.9.7" + "@types/jest": "~27.4.1", + "jest": "~27.5.1", + "ts-jest": "~27.1.3", + "tslib": "~2.3.1", + "typedoc": "~0.22.13", + "typescript": "~4.6.2" }, "dependencies": { "d3": "~3.5.17", diff --git a/typedoc.json b/typedoc.json index b2e2c18..38246e0 100644 --- a/typedoc.json +++ b/typedoc.json @@ -1,15 +1,7 @@ { - "mode": "modules", "out": "./build/docs", - "theme": "minimal", - "ignoreCompilerErrors": true, - "experimentalDecorators": true, - "emitDecoratorMetadata": true, - "preserveConstEnums": true, - "stripInternal": true, - "suppressExcessPropertyErrors": true, - "suppressImplicitAnyIndexErrors": true, + "theme": "default", "exclude": "tests/**/*.ts", "excludePrivate": true, "excludeExternals": true -} +} \ No newline at end of file From b5cb981bbeccdb46835baebaff036b95dfbaa57e Mon Sep 17 00:00:00 2001 From: dvvanessastoiber Date: Mon, 21 Mar 2022 11:55:49 +0100 Subject: [PATCH 2/2] update dist --- dist/common/Categories.js | 4 ++++ dist/common/Categories.js.map | 2 +- dist/common/common.js.map | 2 +- dist/phovea.js | 5 +++++ dist/phovea.js.map | 2 +- dist/views/AOncoPrint.js | 2 +- dist/views/AOncoPrint.js.map | 2 +- 7 files changed, 14 insertions(+), 5 deletions(-) diff --git a/dist/common/Categories.js b/dist/common/Categories.js index 64869b8..3a2bb8f 100644 --- a/dist/common/Categories.js +++ b/dist/common/Categories.js @@ -10,11 +10,15 @@ export var Categories; { value: -2, name: 'Deep Deletion', color: '#92c5de', border: 'transparent' }, // {value: -1, name: 'Heterozygous deletion', color: '#92c5de'}, { value: 0, name: 'NORMAL', color: '#dcdcdc', border: 'transparent' }, + // {value: 1, name: 'Low level amplification', color: '#f4a582'}, + // {value: 2, name: 'High level amplification', color: '#ca0020'}, + // {value: 'null', name: 'Unknown', color: '#FCFCFC', border: '#dcdcdc'} ]; Categories.unknownCopyNumberValue = NaN; Categories.mutationCat = [ { value: 'true', name: 'Mutated', color: '#1BA64E', border: 'transparent' }, { value: 'false', name: 'Non Mutated', color: '#aaa', border: 'transparent' }, + // {value: 'null', name: 'Unknown', color: 'transparent', border: '#999'} ]; Categories.unknownMutationValue = NaN; Categories.GENE_IDTYPE = 'Ensembl'; diff --git a/dist/common/Categories.js.map b/dist/common/Categories.js.map index 00bcc7f..0be29b4 100644 --- a/dist/common/Categories.js.map +++ b/dist/common/Categories.js.map @@ -1 +1 @@ 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\ No newline at end of file diff --git a/dist/phovea.js b/dist/phovea.js index 255f90d..9b5d261 100644 --- a/dist/phovea.js +++ b/dist/phovea.js @@ -18,6 +18,7 @@ export default function (registry) { preview: () => import('./assets/previews/ensembl.jpg'), group: { name: 'External Resources', + // 'order: 0 }, description: 'Show information on your search from Ensembl.org', topics: ['external'], @@ -51,6 +52,7 @@ export default function (registry) { preview: () => import('./assets/previews/uniprot.jpg'), group: { name: 'External Resources', + // 'order: 70 }, description: 'Show information on your search from UniProt', topics: ['uniprot', 'external'], @@ -65,6 +67,7 @@ export default function (registry) { preview: () => import('./assets/previews/open_targets.jpg'), group: { name: 'External Resources', + // 'order: 40 }, filter: { species: 'human', @@ -83,6 +86,7 @@ export default function (registry) { preview: () => import('./assets/previews/human_protein_atlas.jpg'), group: { name: 'External Resources', + // 'order: 50 }, filter: { species: 'human', @@ -97,6 +101,7 @@ export default function (registry) { selection: 'chooser', group: { name: 'External Resources', + // 'order: 60 }, filter: { species: 'human', diff --git a/dist/phovea.js.map b/dist/phovea.js.map index c38c396..ed1d6f1 100644 --- a/dist/phovea.js.map +++ b/dist/phovea.js.map @@ -1 +1 @@ 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\ No newline at end of file diff --git a/dist/views/AOncoPrint.js b/dist/views/AOncoPrint.js index e5e320b..b3fd6aa 100644 --- a/dist/views/AOncoPrint.js +++ b/dist/views/AOncoPrint.js @@ -12,7 +12,7 @@ function unknownSample(sample, sampleId) { sampleId, cn: Categories.unknownCopyNumberValue, expr: 0, - aa_mutated: Categories.unknownMutationValue, + aa_mutated: Categories.unknownMutationValue, // unknown }; } function isMissingMutation(v) { diff --git a/dist/views/AOncoPrint.js.map b/dist/views/AOncoPrint.js.map index e581b66..9fba4be 100644 --- a/dist/views/AOncoPrint.js.map +++ b/dist/views/AOncoPrint.js.map @@ -1 +1 @@ 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\ No newline at end of file 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