Microbial interactions shape cheese flavor formation 1.1.1

Updated README.md (#3) and created CITATION.bib file (#4)

Microbial interactions shape cheese flavor formation

Updated code and data accompanying the manuscript Microbial interactions shape cheese flavor formation

Data

• Replace old models (gapfilled on milk) with updated models sets gapfilled on each media variation + no gapfilling (699c122)

├── data
│   ├── Models
│   │   ├── LC.xml
│   │   ├── LLm1.xml
│   │   ├── LLm2.xml
│   │   ├── ST.xml

Code

• Add helper scripts (935dfb7):

  • model_summary_generate.py to read models and produce individual summaries
  • model_summary_compile.sh script to compile individual summary files into model_summary.tsv file
  • gf_rxns_compile.sh to read through models and extract gapfilled reaction information into gf_rxns.tsv file

Code and data accompanying the manuscript 'Microbial interactions shape cheese flavor formation'

1

update code