diff --git a/Manifest.toml b/Manifest.toml index d99df18c7..976a940fb 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -137,15 +137,15 @@ version = "0.6.0" [[ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "b9de8dc6106e09c79f3f776c27c62360d30e5eb8" +git-tree-sha1 = "7b62b728a5f3dd6ee3b23910303ccf27e82fad5e" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.9.1" +version = "0.8.1" [[Colors]] deps = ["ColorTypes", "FixedPointNumbers", "InteractiveUtils", "Printf", "Reexport"] -git-tree-sha1 = "177d8b959d3c103a6d57574c38ee79c81059c31b" +git-tree-sha1 = "f465c8fb261367b2b6b01f9f30357df6bd658460" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.11.2" +version = "0.10.2" [[CommonSubexpressions]] deps = ["Test"] @@ -226,9 +226,9 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" [[DiffEqBase]] deps = ["ArrayInterface", "ChainRulesCore", "Compat", "DataStructures", "Distributed", "DocStringExtensions", "FunctionWrappers", "IterativeSolvers", "IteratorInterfaceExtensions", "LinearAlgebra", "MuladdMacro", "Parameters", "Printf", "RecipesBase", "RecursiveArrayTools", "RecursiveFactorization", "Requires", "Roots", "SparseArrays", "StaticArrays", "Statistics", "SuiteSparse", "TableTraits", "TreeViews", "ZygoteRules"] -git-tree-sha1 = "d84f56013dcd658ac725252d24847114c9077f79" +git-tree-sha1 = "8560ec7e0e869a99406380ffb959d15cf7814f97" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.13.2" +version = "6.13.3" [[DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "NLsolve", "OrdinaryDiffEq", "RecipesBase", "RecursiveArrayTools", "StaticArrays"] @@ -302,9 +302,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[Distributions]] deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "71a3f1ae1fca9ed876edfbc2079d7b7c27e2e3d5" +git-tree-sha1 = "e063d0b5d27180b98edacd2b1cb90ecfbc171385" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.22.3" +version = "0.21.12" [[DocStringExtensions]] deps = ["LibGit2", "Markdown", "Pkg", "Test"] @@ -395,14 +395,14 @@ version = "0.8.4" [[FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays"] -git-tree-sha1 = "109cca539ac87b1b95538f539ed8eb7e3f35eee5" +git-tree-sha1 = "eb90294af97b564e6036b49296479d7f667763c0" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.1.0" +version = "2.2.0" [[FixedPointNumbers]] -git-tree-sha1 = "4aaea64dd0c30ad79037084f8ca2b94348e65eaa" +git-tree-sha1 = "d14a6fa5890ea3a7e5dcab6811114f132fec2b4b" uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.7.1" +version = "0.6.1" [[ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "NaNMath", "Random", "SpecialFunctions", "StaticArrays"] @@ -422,9 +422,9 @@ uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[GR]] deps = ["Base64", "DelimitedFiles", "LinearAlgebra", "Printf", "Random", "Serialization", "Sockets", "Test"] -git-tree-sha1 = "10633436bc2fc836347bda5073b7b6f06dcdc5e6" +git-tree-sha1 = "c690c2ab22ac9ee323d9966deae61a089362b25c" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.46.0" +version = "0.44.0" [[GaussianMixtures]] deps = ["Clustering", "Compat", "DelimitedFiles", "Distributed", "Distributions", "FileIO", "JLD", "LinearAlgebra", "Logging", "PDMats", "Printf", "Random", "ScikitLearnBase", "SpecialFunctions", "Statistics", "StatsBase"] @@ -581,9 +581,9 @@ version = "2019.0.117+2" [[MacroTools]] deps = ["DataStructures", "Markdown", "Random"] -git-tree-sha1 = "e2fc7a55bb2224e203bbd8b59f72b91323233458" +git-tree-sha1 = "07ee65e03e28ca88bc9a338a3726ae0c3efaa94b" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.3" +version = "0.5.4" [[Markdown]] deps = ["Base64"] @@ -620,6 +620,12 @@ git-tree-sha1 = "c69e4a0db8d482a825c7ac76a433759ade2a5af2" uuid = "f9640e96-87f6-5992-9c3b-0743c6a49ffa" version = "1.6.0" +[[MultivariateStats]] +deps = ["Arpack", "LinearAlgebra", "SparseArrays", "Statistics", "StatsBase"] +git-tree-sha1 = "352fae519b447bf52e6de627b89f448bcd469e4e" +uuid = "6f286f6a-111f-5878-ab1e-185364afe411" +version = "0.7.0" + [[NBInclude]] deps = ["Compat", "JSON", "SoftGlobalScope"] git-tree-sha1 = "9881dd75c83eba704798dfd7185770c29ac720f8" @@ -738,9 +744,9 @@ version = "0.6.2" [[Plots]] deps = ["Base64", "Contour", "Dates", "FFMPEG", "FixedPointNumbers", "GR", "GeometryTypes", "JSON", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Printf", "REPL", "Random", "RecipesBase", "Reexport", "Requires", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs"] -git-tree-sha1 = "11c75a31269c1c64790e7cb910346f64cd4440c1" +git-tree-sha1 = "efbe466a790d7e8a5c4b5ee1601c0c8edc99780b" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "0.27.1" +version = "0.28.4" [[PoissonRandom]] deps = ["Random", "Statistics", "Test"] @@ -827,9 +833,9 @@ version = "0.7.0" [[RecursiveArrayTools]] deps = ["ArrayInterface", "RecipesBase", "Requires", "StaticArrays", "Statistics", "ZygoteRules"] -git-tree-sha1 = "275cb9be63cbb8a1e9d5737dac45ecff5840ad48" +git-tree-sha1 = "09db65bcec111b12d1418787aeed7dd876e27707" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.0.4" +version = "2.0.5" [[RecursiveFactorization]] deps = ["LinearAlgebra"] @@ -955,10 +961,10 @@ uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" version = "0.9.3" [[StatsPlots]] -deps = ["Clustering", "DataStructures", "DataValues", "Distributions", "Interpolations", "KernelDensity", "Observables", "Plots", "RecipesBase", "Reexport", "StatsBase", "Tables", "Widgets"] -git-tree-sha1 = "9f3f096a310f25debaca9dbe6b4e0df7bb428fd0" +deps = ["Clustering", "DataStructures", "DataValues", "Distributions", "Interpolations", "KernelDensity", "MultivariateStats", "Observables", "Plots", "RecipesBase", "Reexport", "StatsBase", "Tables", "Widgets"] +git-tree-sha1 = "e08a7645b9315a523087d5f5b3db7c6c7f8ec96b" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" -version = "0.12.0" +version = "0.13.0" [[SteadyStateDiffEq]] deps = ["DiffEqBase", "DiffEqCallbacks", "LinearAlgebra", "NLsolve", "Reexport"] @@ -978,9 +984,9 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[Sundials]] deps = ["BinaryProvider", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "Logging", "Reexport", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a4d1e71b4fcfe655e0f96e935d173d1cefeaacc7" +git-tree-sha1 = "d170564815dafe201568a84884d2c9bd52dc4eb6" uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" -version = "3.8.1" +version = "3.8.2" [[TableTraits]] deps = ["IteratorInterfaceExtensions"] diff --git a/docs/Manifest.toml b/docs/Manifest.toml index 7e6f0bf28..63e5c971c 100644 --- a/docs/Manifest.toml +++ b/docs/Manifest.toml @@ -48,6 +48,12 @@ git-tree-sha1 = "bc779df8d73be70e4e05a63727d3a4dfb4c52b1f" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" version = "0.1.5" +[[AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "a4d07a1c313392a77042855df46c5f534076fab9" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.0.0" + [[BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"] git-tree-sha1 = "03b21fb83f9e0b13f99c407810cd3b6cac293a1d" @@ -105,6 +111,12 @@ git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" version = "0.5.1" +[[CalibrateEmulateSample]] +deps = ["ArgParse", "Conda", "ConfParser", "DifferentialEquations", "Distributions", "DocStringExtensions", "EllipsisNotation", "GaussianProcesses", "JLD2", "LinearAlgebra", "NPZ", "Optim", "Parameters", "Pkg", "PyCall", "PyPlot", "Random", "ScikitLearn", "Statistics", "StatsBase", "StatsPlots", "Sundials", "Test"] +path = ".." +uuid = "95e48a1f-0bec-4818-9538-3db4340308e3" +version = "0.1.0" + [[CategoricalArrays]] deps = ["Compat", "DataAPI", "Future", "JSON", "Missings", "Printf", "Reexport", "Statistics", "Unicode"] git-tree-sha1 = "23d7324164c89638c18f6d7f90d972fa9c4fa9fb" @@ -164,6 +176,12 @@ git-tree-sha1 = "c7559d68defb3708c0e46df1158e21be86e04312" uuid = "88353bc9-fd38-507d-a820-d3b43837d6b9" version = "0.1.1" +[[Contour]] +deps = ["LinearAlgebra", "StaticArrays", "Test"] +git-tree-sha1 = "b974e164358fea753ef853ce7bad97afec15bb80" +uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" +version = "0.5.1" + [[DataAPI]] git-tree-sha1 = "674b67f344687a88310213ddfa8a2b3c76cc4252" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" @@ -186,6 +204,12 @@ git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" version = "1.0.0" +[[DataValues]] +deps = ["DataValueInterfaces", "Dates"] +git-tree-sha1 = "d88a19299eba280a6d062e135a43f00323ae70bf" +uuid = "e7dc6d0d-1eca-5fa6-8ad6-5aecde8b7ea5" +version = "0.4.13" + [[Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" @@ -208,9 +232,9 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" [[DiffEqBase]] deps = ["ArrayInterface", "ChainRulesCore", "Compat", "DataStructures", "Distributed", "DocStringExtensions", "FunctionWrappers", "IterativeSolvers", "IteratorInterfaceExtensions", "LinearAlgebra", "MuladdMacro", "Parameters", "Printf", "RecipesBase", "RecursiveArrayTools", "RecursiveFactorization", "Requires", "Roots", "SparseArrays", "StaticArrays", "Statistics", "SuiteSparse", "TableTraits", "TreeViews", "ZygoteRules"] -git-tree-sha1 = "d84f56013dcd658ac725252d24847114c9077f79" +git-tree-sha1 = "8560ec7e0e869a99406380ffb959d15cf7814f97" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.13.2" +version = "6.13.3" [[DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "NLsolve", "OrdinaryDiffEq", "RecipesBase", "RecursiveArrayTools", "StaticArrays"] @@ -296,9 +320,9 @@ version = "0.8.1" [[Documenter]] deps = ["Base64", "Dates", "DocStringExtensions", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"] -git-tree-sha1 = "51f0c7df46abb9c07d80e529718951e634670afb" +git-tree-sha1 = "d497bcc45bb98a1fbe19445a774cfafeabc6c6df" uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4" -version = "0.24.4" +version = "0.24.5" [[ElasticArrays]] git-tree-sha1 = "5b5b7cb8cba44bcf337b8af0a1f3e57c89468660" @@ -333,6 +357,12 @@ git-tree-sha1 = "0fa3b52a04a4e210aeb1626def9c90df3ae65268" uuid = "8f5d6c58-4d21-5cfd-889c-e3ad7ee6a615" version = "1.1.0" +[[FFMPEG]] +deps = ["BinaryProvider", "Libdl"] +git-tree-sha1 = "9143266ba77d3313a4cf61d8333a1970e8c5d8b6" +uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" +version = "0.2.4" + [[FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "IntelOpenMP_jll", "Libdl", "LinearAlgebra", "MKL_jll", "Reexport"] git-tree-sha1 = "109d82fa4b00429f9afcce873e9f746f11f018d3" @@ -371,9 +401,9 @@ version = "0.8.4" [[FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays"] -git-tree-sha1 = "109cca539ac87b1b95538f539ed8eb7e3f35eee5" +git-tree-sha1 = "eb90294af97b564e6036b49296479d7f667763c0" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.1.0" +version = "2.2.0" [[FixedPointNumbers]] git-tree-sha1 = "4aaea64dd0c30ad79037084f8ca2b94348e65eaa" @@ -396,6 +426,12 @@ version = "1.0.0" deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +[[GR]] +deps = ["Base64", "DelimitedFiles", "LinearAlgebra", "Printf", "Random", "Serialization", "Sockets", "Test"] +git-tree-sha1 = "10633436bc2fc836347bda5073b7b6f06dcdc5e6" +uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" +version = "0.46.0" + [[GaussianMixtures]] deps = ["Clustering", "Compat", "DelimitedFiles", "Distributed", "Distributions", "FileIO", "JLD", "LinearAlgebra", "Logging", "PDMats", "Printf", "Random", "ScikitLearnBase", "SpecialFunctions", "Statistics", "StatsBase"] git-tree-sha1 = "9b892cfc95da04ca9eff2387bc66f6baddeed606" @@ -414,6 +450,12 @@ git-tree-sha1 = "c59a30ef95fa4b5e0567c1911652e0c70a5d055c" uuid = "01680d73-4ee2-5a08-a1aa-533608c188bb" version = "0.2.2" +[[GeometryTypes]] +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "a96baa00f5ac755689c82c29bc3395e161337c69" +uuid = "4d00f742-c7ba-57c2-abde-4428a4b178cb" +version = "0.7.7" + [[HDF5]] deps = ["BinaryProvider", "Blosc", "CMakeWrapper", "Libdl", "Mmap"] git-tree-sha1 = "d3ea5532668bf9bdd5e8d5f16571e0b520cbbb9f" @@ -442,6 +484,12 @@ version = "2018.0.3+0" deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +[[Interpolations]] +deps = ["AxisAlgorithms", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "c7579b2617b513d8e6eb9f4b91837eefe7080af8" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.12.8" + [[InvertedIndices]] deps = ["Test"] git-tree-sha1 = "15732c475062348b0165684ffe28e85ea8396afc" @@ -470,12 +518,24 @@ git-tree-sha1 = "c8c7a9ca4c17a519961a8ec27e508b07ffc9c1a9" uuid = "4138dd39-2aa7-5051-a626-17a0bb65d9c8" version = "0.9.2" +[[JLD2]] +deps = ["CodecZlib", "DataStructures", "FileIO", "Mmap", "Pkg", "Printf", "UUIDs"] +git-tree-sha1 = "5deae9f0745ef505ed155a0029629cf08502ccab" +uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" +version = "0.1.11" + [[JSON]] deps = ["Dates", "Mmap", "Parsers", "Unicode"] git-tree-sha1 = "b34d7cef7b337321e97d22242c3c2b91f476748e" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.0" +[[KernelDensity]] +deps = ["Distributions", "FFTW", "Interpolations", "Optim", "StatsBase", "Test"] +git-tree-sha1 = "c1048817fe5711f699abc8fabd47b1ac6ba4db04" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.5.1" + [[LaTeXStrings]] deps = ["Compat"] git-tree-sha1 = "7ab9b8788cfab2bdde22adf9004bda7ad9954b6c" @@ -527,14 +587,19 @@ version = "2019.0.117+2" [[MacroTools]] deps = ["DataStructures", "Markdown", "Random"] -git-tree-sha1 = "e2fc7a55bb2224e203bbd8b59f72b91323233458" +git-tree-sha1 = "07ee65e03e28ca88bc9a338a3726ae0c3efaa94b" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.3" +version = "0.5.4" [[Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +[[Measures]] +git-tree-sha1 = "e498ddeee6f9fdb4551ce855a46f54dbd900245f" +uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" +version = "0.3.1" + [[Missings]] deps = ["DataAPI"] git-tree-sha1 = "de0a5ce9e5289f27df672ffabef4d1e5861247d5" @@ -602,6 +667,17 @@ git-tree-sha1 = "8bc6180f328f3c0ea2663935db880d34c57d6eae" uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce" version = "0.4.4" +[[Observables]] +deps = ["Test"] +git-tree-sha1 = "dc02cec22747d1d10d9f70d8a1c03432b5bfbcd0" +uuid = "510215fc-4207-5dde-b226-833fc4488ee2" +version = "0.2.3" + +[[OffsetArrays]] +git-tree-sha1 = "707e34562700b81e8aa13548eb6b23b18112e49b" +uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" +version = "1.0.2" + [[OpenBLAS_jll]] deps = ["Libdl", "Pkg"] git-tree-sha1 = "e2551d7c25d52f35b76d86a50917a3ba8988f519" @@ -654,6 +730,24 @@ version = "0.3.11" deps = ["Dates", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Test", "UUIDs"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +[[PlotThemes]] +deps = ["PlotUtils", "Requires", "Statistics"] +git-tree-sha1 = "df772cc7c78862da96af1ee85cd0111c6640e44e" +uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" +version = "1.0.1" + +[[PlotUtils]] +deps = ["Colors", "Dates", "Printf", "Random", "Reexport"] +git-tree-sha1 = "22bd7d0a1f4665d66317d6c89a57f6bba9f2560d" +uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" +version = "0.6.2" + +[[Plots]] +deps = ["Base64", "Contour", "Dates", "FFMPEG", "FixedPointNumbers", "GR", "GeometryTypes", "JSON", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Printf", "REPL", "Random", "RecipesBase", "Reexport", "Requires", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs"] +git-tree-sha1 = "11c75a31269c1c64790e7cb910346f64cd4440c1" +uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" +version = "0.27.1" + [[PoissonRandom]] deps = ["Random", "Statistics", "Test"] git-tree-sha1 = "44d018211a56626288b5d3f8c6497d28c26dc850" @@ -726,6 +820,12 @@ git-tree-sha1 = "441e6fc35597524ada7f85e13df1f4e10137d16f" uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" version = "1.4.0" +[[Ratios]] +deps = ["Compat"] +git-tree-sha1 = "cdbbe0f350581296f3a2e3e7a91b214121934407" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.3.1" + [[RecipesBase]] git-tree-sha1 = "7bdce29bc9b2f5660a6e5e64d64d91ec941f6aa2" uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" @@ -733,9 +833,9 @@ version = "0.7.0" [[RecursiveArrayTools]] deps = ["ArrayInterface", "RecipesBase", "Requires", "StaticArrays", "Statistics", "ZygoteRules"] -git-tree-sha1 = "275cb9be63cbb8a1e9d5737dac45ecff5840ad48" +git-tree-sha1 = "09db65bcec111b12d1418787aeed7dd876e27707" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.0.4" +version = "2.0.5" [[RecursiveFactorization]] deps = ["LinearAlgebra"] @@ -795,6 +895,12 @@ uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" +[[Showoff]] +deps = ["Dates"] +git-tree-sha1 = "e032c9df551fb23c9f98ae1064de074111b7bc39" +uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" +version = "0.3.1" + [[SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] git-tree-sha1 = "2bdf3b6300a9d66fe29ee8bb51ba100c4df9ecbc" @@ -854,6 +960,12 @@ git-tree-sha1 = "79982835d2ff3970685cb704500909c94189bde9" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" version = "0.9.3" +[[StatsPlots]] +deps = ["Clustering", "DataStructures", "DataValues", "Distributions", "Interpolations", "KernelDensity", "Observables", "Plots", "RecipesBase", "Reexport", "StatsBase", "Tables", "Widgets"] +git-tree-sha1 = "9f3f096a310f25debaca9dbe6b4e0df7bb428fd0" +uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" +version = "0.12.0" + [[SteadyStateDiffEq]] deps = ["DiffEqBase", "DiffEqCallbacks", "LinearAlgebra", "NLsolve", "Reexport"] git-tree-sha1 = "9a2de84a1618e1702dbb95ebdbb84dbf7f24d1ab" @@ -872,9 +984,9 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[Sundials]] deps = ["BinaryProvider", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "Logging", "Reexport", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "a4d1e71b4fcfe655e0f96e935d173d1cefeaacc7" +git-tree-sha1 = "d170564815dafe201568a84884d2c9bd52dc4eb6" uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" -version = "3.8.1" +version = "3.8.2" [[TableTraits]] deps = ["IteratorInterfaceExtensions"] @@ -946,6 +1058,18 @@ git-tree-sha1 = "28807f85197eaad3cbd2330386fac1dcb9e7e11d" uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" version = "0.6.2" +[[Widgets]] +deps = ["Colors", "Dates", "Observables", "OrderedCollections"] +git-tree-sha1 = "fc0feda91b3fef7fe6948ee09bb628f882b49ca4" +uuid = "cc8bc4a8-27d6-5769-a93b-9d913e69aa62" +version = "0.6.2" + +[[WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "bbb9f7fd6fbdd9582e77c0b698312c543de5eb71" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "0.5.0" + [[XML2_jll]] deps = ["Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"] git-tree-sha1 = "ed5603a695aefe3e9e404fc7b052e02cc72cfab6" diff --git a/docs/Project.toml b/docs/Project.toml index 6c2cd50b1..274e9fc77 100644 --- a/docs/Project.toml +++ b/docs/Project.toml @@ -1,5 +1,6 @@ [deps] ArgParse = "c7e460c6-2fb9-53a9-8c5b-16f535851c63" +CalibrateEmulateSample = "95e48a1f-0bec-4818-9538-3db4340308e3" Conda = "8f4d0f93-b110-5947-807f-2305c1781a2d" ConfParser = "88353bc9-fd38-507d-a820-d3b43837d6b9" DifferentialEquations = "0c46a032-eb83-5123-abaf-570d42b7fbaa"