From 35388610cce373f0330e2466e358b32cdf659dea Mon Sep 17 00:00:00 2001 From: jemten Date: Tue, 5 Dec 2023 14:30:25 +0100 Subject: [PATCH] updating download config --- CHANGELOG.md | 2 +- .../mip_download_rd_dna_config_-1.0-.yaml | 34 +++++++++++++------ 2 files changed, 25 insertions(+), 11 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index bb3480a98..1c996d1b8 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -5,7 +5,7 @@ This project adheres to [Semantic Versioning](http://semver.org/). ## [12.0.3] -- updates genmod to version 3.8.2 to introduce normalized rankscore, [#2055](https://github.com/Clinical-Genomics/MIP/issues/2055) +- Updates genmod to version 3.8.2 to introduce normalized rankscore, [#2055](https://github.com/Clinical-Genomics/MIP/issues/2055) ### Tools diff --git a/templates/mip_download_rd_dna_config_-1.0-.yaml b/templates/mip_download_rd_dna_config_-1.0-.yaml index 2b00bbd30..f83418d4c 100644 --- a/templates/mip_download_rd_dna_config_-1.0-.yaml +++ b/templates/mip_download_rd_dna_config_-1.0-.yaml @@ -111,8 +111,8 @@ reference: - gold_standard_indels rank_model: - v0.2 - - v1.34 - v1.35 + - v1.36 reduced_penetrance: - 2017 scout_exons: @@ -124,15 +124,15 @@ reference: - v1.4 svrank_model: - v0.1 - - v1.9 - v1.10 + - v1.11 vcf2cytosure_blacklist_regions: - 1.0 - 200520 vcfanno_config: - v0.2 - - v1.18 - v1.19 + - v1.20 vcfanno_functions: - v1.0 reference_feature: @@ -900,13 +900,6 @@ reference_feature: url_prefix: https://storage.googleapis.com/genomics-public-data/resources/broad/hg38/v0/ rank_model: grch37: - v1.34: - file: rank_model_-v1.34-.ini - file_check: rank_model_-v1.34-.ini.md5 - outfile: rank_model_-v1.34-.ini - outfile_check: rank_model_-v1.34-.ini.md5 - outfile_check_method: md5sum - url_prefix: https://raw.githubusercontent.com/Clinical-Genomics/reference-files/master/rare-disease/rank_model/ v1.35: file: rank_model_-v1.35-.ini file_check: rank_model_-v1.35-.ini.md5 @@ -914,6 +907,13 @@ reference_feature: outfile_check: rank_model_-v1.35-.ini.md5 outfile_check_method: md5sum url_prefix: https://raw.githubusercontent.com/Clinical-Genomics/reference-files/master/rare-disease/rank_model/ + v1.36: + file: rank_model_-v1.36-.ini + file_check: rank_model_-v1.36-.ini.md5 + outfile: rank_model_-v1.36-.ini + outfile_check: rank_model_-v1.36-.ini.md5 + outfile_check_method: md5sum + url_prefix: https://raw.githubusercontent.com/Clinical-Genomics/reference-files/master/rare-disease/rank_model/ grch38: v0.2: file: grch38_rank_model_-v0.2-.ini @@ -985,6 +985,13 @@ reference_feature: outfile_check: svrank_model_-v1.10-.ini.md5 outfile_check_method: md5sum url_prefix: https://raw.githubusercontent.com/Clinical-Genomics/reference-files/master/rare-disease/rank_model/ + v1.11: + file: svrank_model_-v1.11-.ini + file_check: svrank_model_-v1.11-.ini.md5 + outfile: svrank_model_-v1.11-.ini + outfile_check: svrank_model_-v1.11-.ini.md5 + outfile_check_method: md5sum + url_prefix: https://raw.githubusercontent.com/Clinical-Genomics/reference-files/master/rare-disease/rank_model/ grch38: v0.1: file: grch38_sv_rank_model_-v0.1-.ini @@ -1024,6 +1031,13 @@ reference_feature: outfile_check: grch37_vcfanno_config_-v1.19-.toml.md5 outfile_check_method: md5sum url_prefix: https://raw.githubusercontent.com/Clinical-Genomics/reference-files/master/rare-disease/annotation/ + v1.20: + file: grch37_vcfanno_config_-v1.20-.toml + file_check: grch37_vcfanno_config_-v1.20-.toml.md5 + outfile: grch37_vcfanno_config_-v1.20-.toml + outfile_check: grch37_vcfanno_config_-v1.20-.toml.md5 + outfile_check_method: md5sum + url_prefix: https://raw.githubusercontent.com/Clinical-Genomics/reference-files/master/rare-disease/annotation/ grch38: v0.2: file: grch38_vcfanno_config_-v0.2-.toml