diff --git a/chanjo/__init__.py b/chanjo/__init__.py
index be52b4fb..74313a5d 100644
--- a/chanjo/__init__.py
+++ b/chanjo/__init__.py
@@ -1,9 +1,9 @@
 from __future__ import print_function
 
 
-__title__ = 'chanjo'
-__version__ = 'v0.0.4'
-__author__ = 'Robin Andeer'
-__license__ = 'MIT'
-__copyright__ = 'Copyright 2013 Robin Andeer'
-__docformat__ = 'restructuredtext'
\ No newline at end of file
+__title__ = "chanjo"
+__version__ = "0.1.0"
+__author__ = "Robin Andeer"
+__license__ = "MIT"
+__copyright__ = "Copyright 2013 Robin Andeer"
+__docformat__ = "restructuredtext"
\ No newline at end of file
diff --git a/chanjo/ccds2sql.py.REMOVED.git-id b/chanjo/ccds2sql.py.REMOVED.git-id
index b198bb72..3382f555 100644
--- a/chanjo/ccds2sql.py.REMOVED.git-id
+++ b/chanjo/ccds2sql.py.REMOVED.git-id
@@ -1 +1 @@
-47981fda39bd8e1437c812451fcdeaba54b30e43
\ No newline at end of file
+e058654e075a1120420eeaadc5b887727e055423
\ No newline at end of file
diff --git a/chanjo/core.py.REMOVED.git-id b/chanjo/core.py.REMOVED.git-id
index d3198797..63582135 100644
--- a/chanjo/core.py.REMOVED.git-id
+++ b/chanjo/core.py.REMOVED.git-id
@@ -1 +1 @@
-0b40908f907115677fbfd37c11e2e4e899c937f8
\ No newline at end of file
+7a21bdcfbee2bac5411590e12bc71bcb4b24abb5
\ No newline at end of file
diff --git a/chanjo/sql.py.REMOVED.git-id b/chanjo/sql.py.REMOVED.git-id
index 95b1f5b6..28f13dcf 100644
--- a/chanjo/sql.py.REMOVED.git-id
+++ b/chanjo/sql.py.REMOVED.git-id
@@ -1 +1 @@
-cc0d95f2abe35f39934d69b019a5a649403d34b5
\ No newline at end of file
+51721c2e9bbc723b67a7463b70ece116b02bd1fc
\ No newline at end of file
diff --git a/docs/_static/chanjo-focus.001.png.REMOVED.git-id b/docs/_static/chanjo-focus.001.png.REMOVED.git-id
new file mode 100644
index 00000000..531b0456
--- /dev/null
+++ b/docs/_static/chanjo-focus.001.png.REMOVED.git-id
@@ -0,0 +1 @@
+f2828d7c5b4a0952c78b4514accc131c48d42a09
\ No newline at end of file
diff --git a/scripts/chanjo-autopilot.REMOVED.git-id b/scripts/chanjo-autopilot.REMOVED.git-id
new file mode 100644
index 00000000..9ee24e4b
--- /dev/null
+++ b/scripts/chanjo-autopilot.REMOVED.git-id
@@ -0,0 +1 @@
+0b0397687e12a519fdc6394f6c2d4210ff1f4748
\ No newline at end of file
diff --git a/scripts/chanjo-autopilot.py.REMOVED.git-id b/scripts/chanjo-autopilot.py.REMOVED.git-id
deleted file mode 100644
index 1461df2b..00000000
--- a/scripts/chanjo-autopilot.py.REMOVED.git-id
+++ /dev/null
@@ -1 +0,0 @@
-582d9169e28bb495711f77e787ff6847a70b022f
\ No newline at end of file
diff --git a/scripts/chanjo-clones.py.REMOVED.git-id b/scripts/chanjo-clones.py.REMOVED.git-id
deleted file mode 100644
index 2da24a75..00000000
--- a/scripts/chanjo-clones.py.REMOVED.git-id
+++ /dev/null
@@ -1 +0,0 @@
-ceffe0fbb4d81e65f874fb5943dbebca6a7f03ad
\ No newline at end of file
diff --git a/scripts/chanjo-processing.py b/scripts/chanjo-processing.py
deleted file mode 100644
index 5472fb97..00000000
--- a/scripts/chanjo-processing.py
+++ /dev/null
@@ -1,35 +0,0 @@
-#!/usr/bin/env python
-# Simple processing example
-
-import time
-import sys
-from processing import Process
-sys.path.append("/Users/robinandeer/SciLife/modules/chanjo2")
-from chanjo import chanjo, sqlite, bam
-
-
-class Clone(object):
-  """docstring for Thread"""
-  def __init__(self, covPath, elemPath, genes, cutoff):
-    super(Clone, self).__init__()
-    self.chanjo = chanjo.Core()
-    self.chanjo.setAdapters(bam.CoverageAdapter(covPath),
-                            sqlite.ElementAdapter(elemPath))
-
-  def run(self, gene):
-    for gene in self.genes:
-      self.chanjo.annotate(gene, 10, True)
-
-if __name__ == '__main__':
-  start = time.time()
-  print "Let's get started!"
-
-  bam_path = "/Users/robinandeer/mountpoint/test_data/10-7053/mosaik/10-7053.110713_AD035EACXX.1_sorted_pmd.bam"
-  elem_path = "tests/data/CCDS.db"
-  worker = Clone(bam_path, elem_path)
-
-  q = Queue()
-
-  p = Process(target=worker.run, args=[gene])
-  p.start()
-  p.join()
\ No newline at end of file
diff --git a/scripts/chanjo-workerpool.py.REMOVED.git-id b/scripts/chanjo-workerpool.py.REMOVED.git-id
deleted file mode 100644
index 15a64b8e..00000000
--- a/scripts/chanjo-workerpool.py.REMOVED.git-id
+++ /dev/null
@@ -1 +0,0 @@
-96a63fbe5f5990e0e76ae093b047c26d5f5f6f25
\ No newline at end of file
diff --git a/setup.py b/setup.py
deleted file mode 100644
index a95f66e8..00000000
--- a/setup.py
+++ /dev/null
@@ -1,30 +0,0 @@
-#!/usr/bin/env python
-# -*- coding: utf-8 -*-
-
-import chanjo
-
-try:
-    from setuptools import setup
-except ImportError:
-    from distutils.core import setup
-
-setup(
-    name="chanjo",
-    description="A coverage analysis package for clinical sequencing.",
-    author="Robin Andeer",
-    author_email="robin.andeer@gmail.com",
-    url="http://chanjo.readthedocs.org/",
-    download_url="https://github.com/robinandeer/chanjo",
-    version=chanjo.__version__,
-    long_description="",
-    install_requires=[
-        "nose",
-        "pysam",
-        "numpy",
-        "sqlalchemy",
-        "interval",
-        "docopt"
-    ],
-    packages=["chanjo"],
-    scripts=["scripts/chanjo-autopilot.py"]
-)
\ No newline at end of file
diff --git a/setup.py.REMOVED.git-id b/setup.py.REMOVED.git-id
new file mode 100644
index 00000000..d2be12d1
--- /dev/null
+++ b/setup.py.REMOVED.git-id
@@ -0,0 +1 @@
+426e24237ea750dee9317bb4489ccbc7b2e3fdbf
\ No newline at end of file