Fixing bug for metacat #1219
Workflow file for this run
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| name: build | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [ '3.8', '3.9', '3.10', '3.11' ] | |
| max-parallel: 4 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements-dev.txt | |
| - name: Check types | |
| run: | | |
| python -m mypy --follow-imports=normal medcat | |
| - name: Lint | |
| run: | | |
| flake8 medcat | |
| - name: Test | |
| run: | | |
| all_files=$(git ls-files | grep '^tests/.*\.py$' | grep -v '/__init__\.py$' | sed 's/\.py$//' | sed 's/\//./g') | |
| num_files=$(echo "$all_files" | wc -l) | |
| midpoint=$((num_files / 2)) | |
| first_half_nl=$(echo "$all_files" | head -n $midpoint) | |
| second_half_nl=$(echo "$all_files" | tail -n +$(($midpoint + 1))) | |
| timeout 25m python -m unittest ${first_half_nl[@]} | |
| timeout 25m python -m unittest ${second_half_nl[@]} | |
| - name: Get the latest release version | |
| id: get_latest_release | |
| uses: actions/github-script@v6 | |
| with: | |
| script: | | |
| const latestRelease = await github.rest.repos.getLatestRelease({ | |
| owner: context.repo.owner, | |
| repo: context.repo.repo | |
| }); | |
| core.setOutput('latest_version', latestRelease.data.tag_name); | |
| - name: Make sure there's no deprecated methods that should be removed. | |
| # only run this for master -> production PR. I.e just before doing a release. | |
| if: github.event.pull_request.base.ref == 'main' && github.event.pull_request.head.ref == 'production' | |
| env: | |
| VERSION: ${{ steps.get_latest_release.outputs.latest_version }} | |
| run: | | |
| python tests/check_deprecations.py "$VERSION" --next-version --remove-prefix | |
| publish-to-test-pypi: | |
| if: | | |
| github.repository == 'CogStack/MedCAT' && | |
| github.ref == 'refs/heads/master' && | |
| github.event_name == 'push' && | |
| startsWith(github.ref, 'refs/tags') != true | |
| runs-on: ubuntu-20.04 | |
| timeout-minutes: 45 | |
| concurrency: publish-to-test-pypi | |
| needs: [build] | |
| steps: | |
| - name: Checkout master | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: 'master' | |
| fetch-depth: 0 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - name: Install pypa/build | |
| run: >- | |
| python -m | |
| pip install | |
| build | |
| --user | |
| - name: Configure the version | |
| run: >- | |
| sed --in-place | |
| "s/node-and-date/no-local-version/g" | |
| setup.py | |
| - name: Build a binary wheel and a source tarball | |
| run: >- | |
| python -m | |
| build | |
| --sdist | |
| --wheel | |
| --outdir dist/ | |
| . | |
| - name: Publish dev distribution to Test PyPI | |
| uses: pypa/gh-action-pypi-publish@v1.4.2 | |
| with: | |
| password: ${{ secrets.TEST_PYPI_API_TOKEN }} | |
| repository_url: https://test.pypi.org/legacy/ | |
| continue-on-error: true |