Upgrade SpaCy dependencies

[Zethson]

When trying to add MedCAT as a dependency to my project I run into:

Using version ^1.1.3 for medcat

Updating dependencies
Resolving dependencies... (29.8s)

  SolverProblemError

      Because no versions of spacy match >3.0.1,<3.0.2 || >3.0.2,<3.0.3 || >3.0.3,<3.0.4 || >3.0.4,<3.0.5 || >3.0.5,<3.0.6 || >3.0.6,<3.0.7 || >3.0.7,<3.1.0
   and spacy (3.0.1) depends on typer (>=0.3.0,<0.4.0), spacy (>=3.0.1,<3.0.2 || >3.0.2,<3.0.3 || >3.0.3,<3.0.4 || >3.0.4,<3.0.5 || >3.0.5,<3.0.6 || >3.0.6,<3.0.7 || >3.0.7,<3.1.0) requires typer (>=0.3.0,<0.4.0).
      And because spacy (3.0.2) depends on typer (>=0.3.0,<0.4.0), spacy (>=3.0.1,<3.0.3 || >3.0.3,<3.0.4 || >3.0.4,<3.0.5 || >3.0.5,<3.0.6 || >3.0.6,<3.0.7 || >3.0.7,<3.1.0) requires typer (>=0.3.0,<0.4.0).
      And because spacy (3.0.3) depends on typer (>=0.3.0,<0.4.0)
   and spacy (3.0.4) depends on typer (>=0.3.0,<0.4.0), spacy (>=3.0.1,<3.0.5 || >3.0.5,<3.0.6 || >3.0.6,<3.0.7 || >3.0.7,<3.1.0) requires typer (>=0.3.0,<0.4.0).
      And because spacy (3.0.5) depends on typer (>=0.3.0,<0.4.0)
   and spacy (3.0.6) depends on typer (>=0.3.0,<0.4.0), spacy (>=3.0.1,<3.0.7 || >3.0.7,<3.1.0) requires typer (>=0.3.0,<0.4.0).
      Because no versions of medcat match >1.1.3,<2.0.0
   and medcat (1.1.3) depends on spacy (>=3.0.1,<3.1.0), medcat (>=1.1.3,<2.0.0) requires spacy (>=3.0.1,<3.1.0).
      Thus, medcat (>=1.1.3,<2.0.0) requires typer (>=0.3.0,<0.4.0) or spacy (3.0.7).
  (1) So, because spacy (3.0.7) depends on typer (>=0.3.0,<0.4.0), medcat (>=1.1.3,<2.0.0) requires typer (>=0.3.0,<0.4.0).
  
      Because no versions of typer match >0.3.0,<0.3.1 || >0.3.1,<0.3.2 || >0.3.2,<0.4.0
   and typer (0.3.0) depends on click (>=7.1.1,<7.2.0), typer (>=0.3.0,<0.3.1 || >0.3.1,<0.3.2 || >0.3.2,<0.4.0) requires click (>=7.1.1,<7.2.0).
      And because typer (0.3.1) depends on click (>=7.1.1,<7.2.0)
   and typer (0.3.2) depends on click (>=7.1.1,<7.2.0), typer (>=0.3.0,<0.4.0) requires click (>=7.1.1,<7.2.0).
      And because medcat (>=1.1.3,<2.0.0) requires typer (>=0.3.0,<0.4.0) (1), medcat (>=1.1.3,<2.0.0) requires click (>=7.1.1,<7.2.0)
      So, because ehrapy depends on both click (^8.0.2) and medcat (^1.1.3), version solving failed.

From what I can see you are pinning a version of spaCy which requires typer <=0.4.0
The latest spaCy allows for typer dependencies up to 0.5.0. This version has added support for click 8.x : fastapi/typer@b972981

Could you please upgrade the spaCy version, (test whether it works with Click 8.x) and release a new version?

This would be highly appreciated. Happy to provide more detailed if required. I urgently need this to work with my environment.

Thanks!

[w-is-h]

Hi @Zethson happy to review/approve the PR if your tests go through.