From ee32806f1f5aa7c76606591ce2da7b0c64c67809 Mon Sep 17 00:00:00 2001 From: Scott Henderson Date: Tue, 30 Jul 2024 09:45:17 -0700 Subject: [PATCH 1/5] Bumpy many versions --- environment.yml | 47 +++++++++++++++++++++++------------------------ 1 file changed, 23 insertions(+), 24 deletions(-) diff --git a/environment.yml b/environment.yml index 6c4acb0..e462503 100644 --- a/environment.yml +++ b/environment.yml @@ -52,14 +52,14 @@ dependencies: - voila~=0.5 # Core scientific python stack - - cython==0.29.32 # optimization, C API access + - cython~=3.0.10 # optimization, C API access - flox~=0.9.7 # optimization, xarray operations - hypothesis==6.58.0 # needed by numpy testing tools - networkx==2.8.8 - - numba~=0.58.1 # high-performance numerics - - numpy==1.23.5 + - numba~=0.60.0 # high-performance numerics + - numpy==1.26.4 - pandas>=2.0.1,<3.0 - - scikit-image==0.19.3 + - scikit-image~=0.24.0 - scikit-learn>=1.2.2,<2.0.0 - scipy>=1.10 - statsmodels==0.13.5 @@ -68,30 +68,29 @@ dependencies: # Visualization packages - bokeh~=3.2.2 - - cartopy~=0.22.0 # geospatial plotting with matplotlib + - cartopy~=0.23.0 # geospatial plotting with matplotlib - geemap~=0.32 - geoviews~=1.10.1 - - hvplot~=0.8.4 - - ipyleaflet~=0.17.3 + - hvplot~=0.10.0 + - ipyleaflet~=0.19.2 - ipympl~=0.9.3 # This enables matplotlib interaction with jupyter widgets - - leafmap~=0.31 + - leafmap~=0.36 - lonboard~=0.9 - - matplotlib~=3.8.0 + - matplotlib~=3.9.0 - plotly~=5.18.0 - - seaborn==0.12.1 # statistical plotting with matplotlib + - seaborn~=0.13.2 # statistical plotting with matplotlib # Geospatial data packages - - geopandas~=0.13.2 + - geopandas>=1.0 - pygmt~=0.10.0 - rasterio~=1.3 - - rioxarray~=0.15.5 + - rioxarray~=0.17.0 # File formats and file management, download, dataset caching - - h5py~=3.8 - - hdf5~=1.14 + - h5py~=3.11 - h5netcdf~=1.3.0 - nco~=5.1.6 - - pooch==1.6.0 + - pooch~=1.8.0 - zarr~=2.18 - kerchunk~=0.2 @@ -101,9 +100,9 @@ dependencies: - s3fs>=2023.6.0 # handle login and similar details for accessing earthdata protected data # https://github.com/nsidc/earthaccess - - earthaccess~=0.9.0 + - earthaccess~=0.10.0 # Access datasets exposed via STAC - - pystac-client==0.5.1 + - pystac-client~=0.8.3 # Access datasets exposed via intake catalogs - intake==0.6.6 - intake-esm>=2023.7.7 @@ -114,15 +113,15 @@ dependencies: # Distributed computing - dask>=2023.12.1 - dask-labextension~=7.0.0 - - dask-geopandas~=0.3.1 + - dask-geopandas~=0.4.1 # Other useful generic python packages - pillow~=10.2.0 # Python imaging library, useful for many image-related tasks - - pytest==7.2.0 - - pytest-cov==4.0.0 - - pep8==1.7.1 - - flake8==5.0.4 - - tqdm==4.64.1 # progress bars, with notebook support + - pytest~=8.3 + - pytest-cov~=5.0 + - pep8~=1.7 + - flake8~=7.1 + - tqdm~=4.66 # progress bars, with notebook support # Packages specific to climate work - esmpy~=8.4.2 @@ -133,7 +132,7 @@ dependencies: - icepyx~=1.1.0 - itslive~=0.3.2 - is2view~=0.0.8 - - sliderule~=4.0.0 + - sliderule~=4.5 - snowexsql~=0.4 # Desktop tools whose versions are more recent on conda-forge than ubuntu From 6b0f6941d2e30d499d4cdca3390991cf3b2a270f Mon Sep 17 00:00:00 2001 From: Scott Henderson Date: Thu, 1 Aug 2024 11:50:39 -0700 Subject: [PATCH 2/5] Apply suggestions from code review Co-authored-by: Wei Ji <23487320+weiji14@users.noreply.github.com> --- environment.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/environment.yml b/environment.yml index e462503..5c0af18 100644 --- a/environment.yml +++ b/environment.yml @@ -81,8 +81,8 @@ dependencies: - seaborn~=0.13.2 # statistical plotting with matplotlib # Geospatial data packages - - geopandas>=1.0 - - pygmt~=0.10.0 + - geopandas>=0.14.4 + - pygmt~=0.12.0 - rasterio~=1.3 - rioxarray~=0.17.0 From dea7aaa1c33fc9d7bea3946882524a748ca9a22c Mon Sep 17 00:00:00 2001 From: Scott Henderson Date: Thu, 1 Aug 2024 11:51:52 -0700 Subject: [PATCH 3/5] Update QGIS --- environment.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/environment.yml b/environment.yml index 5c0af18..2dc421a 100644 --- a/environment.yml +++ b/environment.yml @@ -136,7 +136,7 @@ dependencies: - snowexsql~=0.4 # Desktop tools whose versions are more recent on conda-forge than ubuntu - - qgis~=3.34.0 + - qgis~=3.38.0 # Maybe needed for qgis? https://github.com/conda-forge/qgis-feedstock/issues/263 - pyopencl # Resolves warning "No ICDs were found": https://github.com/CryoInTheCloud/hub-image/issues/50 From 1617ad7f9df193c75aa4e59c081efc5cb603c92e Mon Sep 17 00:00:00 2001 From: Scott Henderson Date: Thu, 1 Aug 2024 12:06:19 -0700 Subject: [PATCH 4/5] bump jupyter-ai --- environment.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/environment.yml b/environment.yml index 2dc421a..567a051 100644 --- a/environment.yml +++ b/environment.yml @@ -33,7 +33,7 @@ dependencies: # Jupyter tools - ipython~=8.20.0 - ipywidgets~=8.1.1 - - jupyter-ai~=2.9.1 + - jupyter-ai~=2.20 - jupyter-book~=1.0.0 # - jupyter-offlinenotebook~=0.2.2 # Outdated according to jupyterlab # - jupyter-collaboration~=2.0.1 From 865509d2b6ce880b203d9d75901b52a9cff8c908 Mon Sep 17 00:00:00 2001 From: actions-bot <58130806+actions-bot@users.noreply.github.com> Date: Thu, 1 Aug 2024 19:07:58 +0000 Subject: [PATCH 5/5] [condalock-command] autogenerated conda-lock files --- conda-linux-64.lock | 319 +++++++++++++++++++++++--------------------- 1 file changed, 170 insertions(+), 149 deletions(-) diff --git a/conda-linux-64.lock b/conda-linux-64.lock index 1882960..1e5b0b4 100644 --- a/conda-linux-64.lock +++ b/conda-linux-64.lock @@ -1,6 +1,6 @@ # Generated by conda-lock. # platform: linux-64 -# input_hash: f11b22f0a07fbc53b8bab613ae7b74d6f7ca86c7fa7ac9ed8ef53126c0f0050e +# input_hash: 837afbca98e4b06f88d0c67449c76f65d6d6e9ca743590a6b3caea375ed38809 @EXPLICIT https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81 https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.7.4-hbcca054_0.conda#23ab7665c5f63cfb9f1f6195256daac6 @@ -12,7 +12,7 @@ https://conda.anaconda.org/conda-forge/noarch/font-ttf-ubuntu-0.83-h77eed37_2.co https://conda.anaconda.org/conda-forge/linux-64/gh-2.32.1-ha8f183a_0.conda#220ab331a2770ab9fbe7302751d6eafd https://conda.anaconda.org/conda-forge/linux-64/gshhg-gmt-2.3.7-ha770c72_1003.tar.bz2#64505e3a020e1927b453a0da59df2267 https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.40-hf3520f5_7.conda#b80f2f396ca2c28b8c14c437a4ed1e74 -https://conda.anaconda.org/conda-forge/linux-64/libboost-headers-1.85.0-ha770c72_3.conda#7bb7851133645b428320393dcaf53909 +https://conda.anaconda.org/conda-forge/linux-64/mpi-1.0-openmpi.tar.bz2#1dcc49e16749ff79ba2194fa5d4ca5e7 https://conda.anaconda.org/conda-forge/linux-64/pandoc-3.3-ha770c72_0.conda#0a3af8b93ba501c6ba020deacc9df841 https://conda.anaconda.org/conda-forge/noarch/poppler-data-0.4.12-hd8ed1ab_0.conda#d8d7293c5b37f39b2ac32940621c6592 https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.11-4_cp311.conda#d786502c97404c94d7d58d258a445a65 @@ -25,7 +25,7 @@ https://conda.anaconda.org/conda-forge/noarch/fonts-conda-ecosystem-1-0.tar.bz2# https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-14.1.0-h77fa898_0.conda#ca0fad6a41ddaef54a153b78eccb5037 https://conda.anaconda.org/conda-forge/linux-64/alsa-lib-1.2.12-h4ab18f5_0.conda#7ed427f0871fd41cb1d9c17727c17589 https://conda.anaconda.org/conda-forge/linux-64/attr-2.5.1-h166bdaf_1.tar.bz2#d9c69a24ad678ffce24c6543a0176b00 -https://conda.anaconda.org/conda-forge/linux-64/aws-c-common-0.9.19-h4ab18f5_0.conda#c6dedd5eab2236f4abb59ade9fb7fd44 +https://conda.anaconda.org/conda-forge/linux-64/aws-c-common-0.9.23-h4ab18f5_0.conda#94d61ae2b2b701008a9d52ce6bbead27 https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h4bc722e_7.conda#62ee74e96c5ebb0af99386de58cf9553 https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.32.3-h4bc722e_0.conda#7624e34ee6baebfc80d67bac76cc9d9d https://conda.anaconda.org/conda-forge/linux-64/dav1d-1.2.1-hd590300_0.conda#418c6ca5929a611cbd69204907a83995 @@ -45,6 +45,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libgettextpo-0.22.5-h59595ed_2.c https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-14.1.0-hc5f4f2c_0.conda#6456c2620c990cd8dde2428a27ba0bc5 https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.17-hd590300_2.conda#d66573916ffcf376178462f1b61c941e https://conda.anaconda.org/conda-forge/linux-64/libjpeg-turbo-3.0.0-hd590300_1.conda#ea25936bb4080d843790b586850f82b8 +https://conda.anaconda.org/conda-forge/linux-64/libnl-3.10.0-h4bc722e_0.conda#6221e705f55cf0533f0777ae54ad86c6 https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.1-hd590300_0.conda#30fd6e37fe21f86f4bd26d6ee73eeec7 https://conda.anaconda.org/conda-forge/linux-64/libogg-1.3.5-h4ab18f5_0.conda#601bfb4b3c6f0b844443bb81a56651e0 https://conda.anaconda.org/conda-forge/linux-64/libopus-1.3.1-h7f98852_1.tar.bz2#15345e56d527b330e1cacbdf58676e8f @@ -58,7 +59,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.38.1-h0b41bf4_0.conda# https://conda.anaconda.org/conda-forge/linux-64/libuv-1.46.0-hd590300_0.conda#d23c76f7e6dcd6243d1b6ef5e62d17d2 https://conda.anaconda.org/conda-forge/linux-64/libwebp-base-1.4.0-hd590300_0.conda#b26e8aa824079e1be0294e7152ca4559 https://conda.anaconda.org/conda-forge/linux-64/libxcrypt-4.4.36-hd590300_1.conda#5aa797f8787fe7a17d1b0821485b5adc -https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.13-h4ab18f5_6.conda#27329162c0dc732bcf67a4e0cd488125 +https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.1-h4ab18f5_1.conda#57d7dc60e9325e3de37ff8dffd18e814 https://conda.anaconda.org/conda-forge/linux-64/lzo-2.10-hd590300_1001.conda#ec7398d21e2651e0dcb0044d03b9a339 https://conda.anaconda.org/conda-forge/linux-64/metis-5.1.0-h59595ed_1007.conda#40ccb8318df2500f83bd868dd8fcd201 https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.5-h59595ed_0.conda#fcea371545eda051b6deafb24889fc69 @@ -79,18 +80,17 @@ https://conda.anaconda.org/conda-forge/linux-64/xorg-xf86vidmodeproto-2.3.1-h7f9 https://conda.anaconda.org/conda-forge/linux-64/xorg-xproto-7.0.31-h7f98852_1007.tar.bz2#b4a4381d54784606820704f7b5f05a15 https://conda.anaconda.org/conda-forge/linux-64/xz-5.2.6-h166bdaf_0.tar.bz2#2161070d867d1b1204ea749c8eec4ef0 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-https://conda.anaconda.org/conda-forge/linux-64/geos-3.12.1-h59595ed_0.conda#8c0f4f71f5a59ceb0c6fa9f51501066d +https://conda.anaconda.org/conda-forge/linux-64/fmt-11.0.1-h434a139_0.conda#0568852d3fc5d4854bbfa530cf2a38ab +https://conda.anaconda.org/conda-forge/linux-64/geos-3.12.2-he02047a_1.conda#aab9195bc018b82dc77a84584b36cce9 https://conda.anaconda.org/conda-forge/linux-64/gflags-2.2.2-he1b5a44_1004.tar.bz2#cddaf2c63ea4a5901cf09524c490ecdc https://conda.anaconda.org/conda-forge/linux-64/ghostscript-10.03.1-h59595ed_0.conda#be973b4541601270b77232bc46249a3a https://conda.anaconda.org/conda-forge/linux-64/gmp-6.3.0-hac33072_2.conda#c94a5994ef49749880a8139cf9afcbe1 @@ -115,7 +115,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libhwy-1.1.0-h00ab1b0_0.conda#88 https://conda.anaconda.org/conda-forge/linux-64/libllvm14-14.0.6-hcd5def8_4.conda#73301c133ded2bf71906aa2104edae8b https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.58.0-h47da74e_1.conda#700ac6ea6d53d5510591c4344d5c989a https://conda.anaconda.org/conda-forge/linux-64/libpng-1.6.43-h2797004_0.conda#009981dd9cfcaa4dbfa25ffaed86bcae -https://conda.anaconda.org/conda-forge/linux-64/libspatialindex-1.9.3-he02047a_5.conda#659e6a5c5c7a811bd99e26375cb798b9 +https://conda.anaconda.org/conda-forge/linux-64/libspatialindex-2.0.0-he02047a_0.conda#e7d2dcd1a058149ff9731a8dca39566e https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.46.0-hde9e2c9_0.conda#18aa975d2094c34aef978060ae7da7d8 https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.11.0-h0841786_0.conda#1f5a58e686b13bcfde88b93f547d23fe https://conda.anaconda.org/conda-forge/linux-64/libudunits2-2.2.28-h40f5838_3.conda#4bdace082e911a3e1f1f0b721bed5b56 @@ -126,19 +126,20 @@ https://conda.anaconda.org/conda-forge/linux-64/libzip-1.10.1-h2629f0a_3.conda#a 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