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Merge branch 'NOAA-EMC:develop' into develop #2

Merge branch 'NOAA-EMC:develop' into develop

Merge branch 'NOAA-EMC:develop' into develop #2

Workflow file for this run

# This is a CI workflow for the fv3atm project.
#
# This workflow builds and tests the fv3atm library using GCC, and it tests
# different CMake build options.
#
# Alex Richert, 6 Dec 2023
name: GCC
on:
push:
branches:
- develop
pull_request:
branches:
- develop
jobs:
GCC:
runs-on: ubuntu-latest
strategy:
matrix:
cmake_opts: ["-D32BIT=ON", "-D32BIT=OFF"]
gcc_ver: ["11"]
mpi: ["mpich"]
steps:
- name: install-doxygen
run: |
sudo apt-get install doxygen graphviz
- name: checkout-fv3atm
uses: actions/checkout@v3
with:
path: ${{ github.workspace }}/fv3atm
submodules: recursive
- name: cache-spack
id: cache-spack
uses: actions/cache@v3
with:
path: ${{ github.workspace }}/spack-develop
key: spack-${{ hashFiles('fv3atm/ci/spack.yaml') }}-gcc${{ matrix.gcc_ver }}-2-${{ matrix.cmake_opts }}-${{ matrix.mpich }}
# Building dependencies takes 40+ min
- name: spack-install
if: steps.cache-spack.outputs.cache-hit != 'true'
run: |
wget --no-verbose https://github.com/spack/spack/archive/refs/heads/develop.zip
unzip develop.zip -d ${GITHUB_WORKSPACE}/ &> unzip.out
. ${GITHUB_WORKSPACE}/spack-develop/share/spack/setup-env.sh
spack env create gcc${{ matrix.gcc_ver }} ${GITHUB_WORKSPACE}/fv3atm/ci/spack.yaml
spack env activate gcc${{ matrix.gcc_ver }}
spack compiler find | grep gcc@${{ matrix.gcc_ver }}
spack external find gmake cmake git git-lfs perl python ${{ matrix.mpi }}
spack config add "packages:all:require:['%gcc@${{ matrix.gcc_ver }}']"
spack config add "packages:mpi:require:'${{ matrix.mpi }}'"
spack concretize |& tee ${SPACK_ENV}/log.concretize
spack install -j2 --fail-fast
- name: build-fv3atm
run: |
. ${GITHUB_WORKSPACE}/spack-develop/share/spack/setup-env.sh
spack env activate gcc${{ matrix.gcc_ver }}
spack load $(spack find --format "{name}")
cd ${GITHUB_WORKSPACE}/fv3atm
git clone https://github.com/NOAA-EMC/CMakeModules
git clone --recurse-submodules https://github.com/NOAA-PSL/stochastic_physics stochastic_physics_repo
mkdir ${GITHUB_WORKSPACE}/build
sed -i 's/doc /upp_doc /' upp/docs/CMakeLists.txt
cd ${GITHUB_WORKSPACE}/build
cmake ${GITHUB_WORKSPACE}/fv3atm -DBUILD_TESTING=ON ${{ matrix.cmake_opts }} -DENABLE_DOCS=ON
make -j2
ls -l /home/runner/work/fv3atm/fv3atm/fv3atm/io
- uses: actions/upload-artifact@v3
with:
name: docs
path: |
build/docs/html
- name: debug-artifacts
uses: actions/upload-artifact@v3
if: ${{ failure() }}
with:
name: ccpp_prebuild_logs
path: ${{ github.workspace }}/build/ccpp/ccpp_prebuild.*