From 92879d705f683dd2eecddb566612093b714e7f09 Mon Sep 17 00:00:00 2001
From: Haider Iqbal <haideri@ebi.ac.uk>
Date: Mon, 13 May 2024 13:20:55 +0100
Subject: [PATCH] - update PHI and PECO ontology paths (#659)

---
 ebi_ontologies.json | 47 ++++++++++++++++++++++++++++++++++++++++++++-
 1 file changed, 46 insertions(+), 1 deletion(-)

diff --git a/ebi_ontologies.json b/ebi_ontologies.json
index f00541203..602c94cfe 100644
--- a/ebi_ontologies.json
+++ b/ebi_ontologies.json
@@ -112,7 +112,52 @@
       "base_uri": [
         "http://purl.obolibrary.org/obo/PHI_"
       ],
-      "ontology_purl": "file:///nfs/production/parkinso/spot/ols4/prod/local_ontologies/phi.obo"
+      "ontology_purl": "file:///nfs/production/parkinso/spot/ols4/prod/local_ontologies/phi.owl"
+    },
+    {
+      "activity_status": "active",
+      "contact": {
+        "email": "jaiswalp@science.oregonstate.edu",
+        "github": "jaiswalp",
+        "label": "Pankaj Jaiswal",
+        "orcid": "0000-0002-1005-8383"
+      },
+      "depicted_by": "http://planteome.org/sites/default/files/garland_logo.PNG",
+      "description": "A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experiments.",
+      "domain": "investigations",
+      "homepage": "http://planteome.org/",
+      "id": "peco",
+      "layout": "ontology_detail",
+      "license": {
+        "label": "CC BY 4.0",
+        "logo": "http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png",
+        "url": "https://creativecommons.org/licenses/by/4.0/"
+      },
+      "ontology_purl": "file:///nfs/production/parkinso/spot/ols4/prod/local_ontologies/peco.owl",
+      "page": "http://browser.planteome.org/amigo/term/PECO:0007359",
+      "preferredPrefix": "PECO",
+      "products": [
+        {
+          "id": "peco.owl",
+          "ontology_purl": "file:///nfs/production/parkinso/spot/ols4/prod/local_ontologies/peco.owl"
+        },
+        {
+          "id": "peco.obo",
+          "ontology_purl": "file:///nfs/production/parkinso/spot/ols4/prod/local_ontologies/peco.obo"
+        }
+      ],
+      "publications": [
+        {
+          "id": "https://www.ncbi.nlm.nih.gov/pubmed/29186578",
+          "title": "The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics."
+        }
+      ],
+      "repository": "https://github.com/Planteome/plant-experimental-conditions-ontology",
+      "tags": [
+        "experimental conditions"
+      ],
+      "title": "Plant Experimental Conditions Ontology",
+      "tracker": "https://github.com/Planteome/plant-experimental-conditions-ontology/issues"
     },
     {
       "id": "msio",