diff --git a/versions/cesm2.1/doctrees/cesm_configurations.doctree b/versions/cesm2.1/doctrees/cesm_configurations.doctree index 567825ddcf..0f5a203f16 100644 Binary files a/versions/cesm2.1/doctrees/cesm_configurations.doctree and b/versions/cesm2.1/doctrees/cesm_configurations.doctree differ diff --git a/versions/cesm2.1/doctrees/downloading_cesm.doctree b/versions/cesm2.1/doctrees/downloading_cesm.doctree index 5267ff6caa..f4bbfd6534 100644 Binary files a/versions/cesm2.1/doctrees/downloading_cesm.doctree and b/versions/cesm2.1/doctrees/downloading_cesm.doctree differ diff --git a/versions/cesm2.1/doctrees/environment.pickle b/versions/cesm2.1/doctrees/environment.pickle index 27efc2500d..a1f5c0a0fc 100644 Binary files a/versions/cesm2.1/doctrees/environment.pickle and b/versions/cesm2.1/doctrees/environment.pickle differ diff --git a/versions/cesm2.1/doctrees/index.doctree b/versions/cesm2.1/doctrees/index.doctree index ae3a6c4286..41b9922ec8 100644 Binary files a/versions/cesm2.1/doctrees/index.doctree and b/versions/cesm2.1/doctrees/index.doctree differ diff --git a/versions/cesm2.1/doctrees/introduction.doctree b/versions/cesm2.1/doctrees/introduction.doctree index 8bfe34328f..42809c6a56 100644 Binary files a/versions/cesm2.1/doctrees/introduction.doctree and b/versions/cesm2.1/doctrees/introduction.doctree differ diff --git a/versions/cesm2.1/doctrees/quickstart.doctree b/versions/cesm2.1/doctrees/quickstart.doctree index 88ea21bab2..209ffc5288 100644 Binary files a/versions/cesm2.1/doctrees/quickstart.doctree and b/versions/cesm2.1/doctrees/quickstart.doctree differ diff --git a/versions/cesm2.1/html/_sources/cesm_configurations.rst.txt b/versions/cesm2.1/html/_sources/cesm_configurations.rst.txt index 608846b31a..d584305992 100644 --- a/versions/cesm2.1/html/_sources/cesm_configurations.rst.txt +++ b/versions/cesm2.1/html/_sources/cesm_configurations.rst.txt @@ -108,13 +108,62 @@ The CESM2 components can be combined in numerous ways to carry out various scientific or software experiments. A particular mix of components, *along with* component-specific configuration and/or namelist settings is called a `component set or compset -`_. CESM -has a shorthand naming convention for component sets that are -supported out-of-the-box. - -The compset name usually has a well defined first letter followed by -some characters that are indicative of the configuration setup. Each -compset name has a corresponding short name. +`_. CESM has a +shorthand naming convention (known as an alias) for component sets that +are supported out-of-the-box. The compset alias usually has a +well-defined first letter followed by some characters that are +indicative of the configuration setup. + +The first letter in a compset alias generally indicates which of the +components are fully active (prognostic), which are data components, and +which are completely absent (or stub). For the most part, this first +letter refers only to the atmosphere (atm), land (lnd), sea ice (ice) +and ocean (ocn) components. The type of component used for river (rof), +land ice (glc) and ocean wave (wav) is either specified in some other +way in the alias or is not specified explicitly. For example, an +evolving land ice (glc) model is denoted by a capital G near the end of +the compset alias (e.g., B1850G is similar to B1850 but with an evolving +Greenland ice sheet). In some cases, the distinction between prognostic +and data components is not clear-cut -- for example, when using a data +ocean model in slab ocean model (SOM) mode, or when using a prognostic +sea ice model (CICE) in prescribed mode. + +The following table summarizes these first-letter designations in +compset aliases: + +.. table:: + + +-------------+--------------------+-----------------+--------------------------------------------------------------------------+ + | Designation | Active Components | Data Components | Notes | + +=============+====================+=================+==========================================================================+ + | A | -- | various | All data components; used for software testing | + +-------------+--------------------+-----------------+--------------------------------------------------------------------------+ + | B | atm, lnd, ice, ocn | -- | Fully active components | + +-------------+--------------------+-----------------+--------------------------------------------------------------------------+ + | C | ocn | atm, ice, rof | \ | + +-------------+--------------------+-----------------+--------------------------------------------------------------------------+ + | D | ice | atm, ocn, rof | Slab ocean model (SOM) | + +-------------+--------------------+-----------------+--------------------------------------------------------------------------+ + | E | atm, lnd, ice | ocn | Slab ocean model (SOM) | + +-------------+--------------------+-----------------+--------------------------------------------------------------------------+ + | F | atm, lnd | ice, ocn | Sea ice in prescribed mode; some F compsets use fewer surface components | + +-------------+--------------------+-----------------+--------------------------------------------------------------------------+ + | G | ice, ocn | atm, rof | \ | + +-------------+--------------------+-----------------+--------------------------------------------------------------------------+ + | I | lnd | atm | \ | + +-------------+--------------------+-----------------+--------------------------------------------------------------------------+ + | J | lnd, ice, ocn | atm | Can be used to spin up the surface components | + +-------------+--------------------+-----------------+--------------------------------------------------------------------------+ + | P | atm | -- | CAM PORT compsets | + +-------------+--------------------+-----------------+--------------------------------------------------------------------------+ + | Q | atm | ocn | Aquaplanet compsets | + +-------------+--------------------+-----------------+--------------------------------------------------------------------------+ + | S | -- | -- | No components present; used for software testing | + +-------------+--------------------+-----------------+--------------------------------------------------------------------------+ + | T | glc | lnd | \ | + +-------------+--------------------+-----------------+--------------------------------------------------------------------------+ + | X | -- | -- | Coupler-test components; used for software testing | + +-------------+--------------------+-----------------+--------------------------------------------------------------------------+ See `supported component sets `_ for a diff --git a/versions/cesm2.1/html/_static/basic.css b/versions/cesm2.1/html/_static/basic.css index 24bc73e7f5..be19270e4a 100644 --- a/versions/cesm2.1/html/_static/basic.css +++ b/versions/cesm2.1/html/_static/basic.css @@ -4,7 +4,7 @@ * * Sphinx stylesheet -- basic theme. * - * :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2021 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ @@ -764,6 +764,7 @@ div.code-block-caption code { } table.highlighttable td.linenos, +span.linenos, div.doctest > div.highlight span.gp { /* gp: Generic.Prompt */ user-select: none; } diff --git a/versions/cesm2.1/html/_static/doctools.js b/versions/cesm2.1/html/_static/doctools.js index daccd209da..144884ea65 100644 --- a/versions/cesm2.1/html/_static/doctools.js +++ b/versions/cesm2.1/html/_static/doctools.js @@ -4,7 +4,7 @@ * * Sphinx JavaScript utilities for all documentation. * - * :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2021 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ @@ -285,9 +285,10 @@ var Documentation = { initOnKeyListeners: function() { $(document).keydown(function(event) { var activeElementType = document.activeElement.tagName; - // don't navigate when in search box or textarea + // don't navigate when in search box, textarea, dropdown or button if (activeElementType !== 'TEXTAREA' && activeElementType !== 'INPUT' && activeElementType !== 'SELECT' - && !event.altKey && !event.ctrlKey && !event.metaKey && !event.shiftKey) { + && activeElementType !== 'BUTTON' && !event.altKey && !event.ctrlKey && !event.metaKey + && !event.shiftKey) { switch (event.keyCode) { case 37: // left var prevHref = $('link[rel="prev"]').prop('href'); diff --git a/versions/cesm2.1/html/_static/language_data.js b/versions/cesm2.1/html/_static/language_data.js index d2b4ee91b0..0e7dc7e9ef 100644 --- a/versions/cesm2.1/html/_static/language_data.js +++ b/versions/cesm2.1/html/_static/language_data.js @@ -5,7 +5,7 @@ * This script contains the language-specific data used by searchtools.js, * namely the list of stopwords, stemmer, scorer and splitter. * - * :copyright: Copyright 2007-2020 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2021 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ diff --git a/versions/cesm2.1/html/_static/pygments.css b/versions/cesm2.1/html/_static/pygments.css index d14395efc3..de7af262ff 100644 --- a/versions/cesm2.1/html/_static/pygments.css +++ b/versions/cesm2.1/html/_static/pygments.css @@ -1,8 +1,8 @@ -pre { line-height: 125%; margin: 0; } -td.linenos pre { color: #000000; background-color: #f0f0f0; padding: 0 5px 0 5px; } -span.linenos { color: #000000; background-color: #f0f0f0; 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- htmlElement.innerHTML = htmlString; - $(htmlElement).find('.headerlink').remove(); - docContent = $(htmlElement).find('[role=main]')[0]; + var virtualDocument = document.implementation.createHTMLDocument('virtual'); + var htmlElement = $(htmlString, virtualDocument); + htmlElement.find('.headerlink').remove(); + docContent = htmlElement.find('[role=main]')[0]; if(docContent === undefined) { console.warn("Content block not found. Sphinx search tries to obtain it " + "via '[role=main]'. Could you check your theme or template."); diff --git a/versions/cesm2.1/html/cesm_configurations.html b/versions/cesm2.1/html/cesm_configurations.html index b8570b53e4..201277c714 100644 --- a/versions/cesm2.1/html/cesm_configurations.html +++ b/versions/cesm2.1/html/cesm_configurations.html @@ -420,12 +420,113 @@

CESM2 Component SetsThe CESM2 components can be combined in numerous ways to carry out various scientific or software experiments. A particular mix of components, along with component-specific configuration and/or -namelist settings is called a component set or compset. CESM -has a shorthand naming convention for component sets that are -supported out-of-the-box.

-

The compset name usually has a well defined first letter followed by -some characters that are indicative of the configuration setup. Each -compset name has a corresponding short name.

+namelist settings is called a component set or compset. CESM has a +shorthand naming convention (known as an alias) for component sets that +are supported out-of-the-box. The compset alias usually has a +well-defined first letter followed by some characters that are +indicative of the configuration setup.

+

The first letter in a compset alias generally indicates which of the +components are fully active (prognostic), which are data components, and +which are completely absent (or stub). For the most part, this first +letter refers only to the atmosphere (atm), land (lnd), sea ice (ice) +and ocean (ocn) components. The type of component used for river (rof), +land ice (glc) and ocean wave (wav) is either specified in some other +way in the alias or is not specified explicitly. For example, an +evolving land ice (glc) model is denoted by a capital G near the end of +the compset alias (e.g., B1850G is similar to B1850 but with an evolving +Greenland ice sheet). In some cases, the distinction between prognostic +and data components is not clear-cut – for example, when using a data +ocean model in slab ocean model (SOM) mode, or when using a prognostic +sea ice model (CICE) in prescribed mode.

+

The following table summarizes these first-letter designations in +compset aliases:

+ ++++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

Designation

Active Components

Data Components

Notes

A

–

various

All data components; used for software testing

B

atm, lnd, ice, ocn

–

Fully active components

C

ocn

atm, ice, rof

D

ice

atm, ocn, rof

Slab ocean model (SOM)

E

atm, lnd, ice

ocn

Slab ocean model (SOM)

F

atm, lnd

ice, ocn

Sea ice in prescribed mode; some F compsets use fewer surface components

G

ice, ocn

atm, rof

I

lnd

atm

J

lnd, ice, ocn

atm

Can be used to spin up the surface components

P

atm

–

CAM PORT compsets

Q

atm

ocn

Aquaplanet compsets

S

–

–

No components present; used for software testing

T

glc

lnd

X

–

–

Coupler-test components; used for software testing

See supported component sets for a complete list of supported compset options. Running query_config with the --compsets option will also provide a listing of the @@ -555,7 +656,6 @@

CESM2 Validation - diff --git a/versions/cesm2.1/html/downloading_cesm.html b/versions/cesm2.1/html/downloading_cesm.html index 83fcd51ac1..53b06e2f87 100644 --- a/versions/cesm2.1/html/downloading_cesm.html +++ b/versions/cesm2.1/html/downloading_cesm.html @@ -359,7 +359,6 @@

Downloading input data - diff --git a/versions/cesm2.1/html/genindex.html b/versions/cesm2.1/html/genindex.html index c959b42e66..370748ea5f 100644 --- a/versions/cesm2.1/html/genindex.html +++ b/versions/cesm2.1/html/genindex.html @@ -215,7 +215,6 @@

Index

- diff --git a/versions/cesm2.1/html/index.html b/versions/cesm2.1/html/index.html index cb36a960af..f88aa1e517 100644 --- a/versions/cesm2.1/html/index.html +++ b/versions/cesm2.1/html/index.html @@ -260,7 +260,6 @@

Table of contents - diff --git a/versions/cesm2.1/html/introduction.html b/versions/cesm2.1/html/introduction.html index 726c8a654b..31faef819b 100644 --- a/versions/cesm2.1/html/introduction.html +++ b/versions/cesm2.1/html/introduction.html @@ -328,7 +328,6 @@

CESM2 Software/Operating System Prerequisites - diff --git a/versions/cesm2.1/html/quickstart.html b/versions/cesm2.1/html/quickstart.html index 96ba52089b..5fa24725c4 100644 --- a/versions/cesm2.1/html/quickstart.html +++ b/versions/cesm2.1/html/quickstart.html @@ -401,7 +401,6 @@

Run the case - diff --git a/versions/cesm2.1/html/search.html b/versions/cesm2.1/html/search.html index 5c7ea404fe..6a4ac4bc56 100644 --- a/versions/cesm2.1/html/search.html +++ b/versions/cesm2.1/html/search.html @@ -221,7 +221,6 @@ - diff --git a/versions/cesm2.1/html/searchindex.js b/versions/cesm2.1/html/searchindex.js index d82960051d..7cd9d6f0cc 100644 --- a/versions/cesm2.1/html/searchindex.js +++ b/versions/cesm2.1/html/searchindex.js @@ -1 +1 @@ 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