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Bugfixes/merge fixes 110 #833

Merged
merged 10 commits into from
Oct 16, 2023
Merged

Bugfixes/merge fixes 110 #833

merged 10 commits into from
Oct 16, 2023

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marcoooo
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Description

Missing updates from release 110 to main

Use case

Usual merging / branching.

Benefits

All code up to date

Possible Drawbacks

Well...

Testing

  • Have you added/modified unit tests to test the changes?
  • If so, do the tests pass?
  • Have you run the entire test suite and no regression was detected?
  • TravisCI passed on your branch

Dependencies

If applicable, define what code dependencies were added and/or updated.

marcoooo and others added 10 commits June 9, 2023 09:05
Recompiled dependencies to use hive default branch.
* Added a failure if gzip fails to complete properly

* Switched backtick gzip to perl package in mysqldump and dumpfile

* bugfix

* revert and fixed the compress calls

* revert and fixed the compress calls

* unpack the arrayref to array

* fixed flat file to pass array reference.

* Removed automatic flow for tsvs

* Readded flow to tsvs and fixed bug with a conditional

* Readded param_required and added optional flow

* Swapped array is empty test for a better one

* removed array test as the files should alwalys be generated

* Swapped array is empty test for a better one and fixed flow

* Modified array ref

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Co-authored-by: vinay-ebi <vinay@ebi.ac.uk>
fix data_files path removig the vertebrates folder
…-fixes-110

# Conflicts:
#	scripts/py/regulation_ftp_symlinks.py
@marcoooo marcoooo marked this pull request as ready for review October 16, 2023 13:57
@marcoooo marcoooo self-assigned this Oct 16, 2023
@marcoooo marcoooo merged commit b0bd310 into main Oct 16, 2023
2 checks passed
@marcoooo marcoooo deleted the bugfixes/merge-fixes-110 branch October 17, 2023 15:05
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3 participants