Update SpliceAI GPU #983
Open
Update SpliceAI GPU #983
Travis CI / Travis CI - Pull Request
succeeded
Aug 30, 2024 in 9m 58s
Build Passed
The build passed, just like the previous build.
Details
This is a pull request build.
It is running a build against the merge commit, after merging #983 Update SpliceAI GPU.
Any changes that have been made to the main branch before the build ran are also included.
Jobs and Stages
This build has two jobs, running in parallel.
Job | Perl | ENV | OS | State |
---|---|---|---|---|
6155.1 | 5.14 | AUTH_TOKEN=[secure] | Linux | passed |
6155.2 | 5.26 | AUTH_TOKEN=[secure] | Linux | passed |
Build Configuration
Build Option | Setting |
---|---|
Language | Perl |
Operating System | Linux (Trusty) |
Perl Versions | 5.14, 5.26 |
Build Configuration
{
"language": "perl",
"os": [
"linux"
],
"dist": "trusty",
"perl": [
"5.14",
"5.26"
],
"env": [
"global=AUTH_TOKEN=[secure] jobs={:COVERALLS=>\"true\", :DB=>\"mysql\"}={:COVERALLS=>\"false\", :DB=>\"mysql\"}"
],
"sudo": false,
"addons": {
"apt": {
"packages": [
"unzip"
]
}
},
"services": [
"mysql"
],
"before_install": [
"export ENSEMBL_BRANCH=main",
"git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl-test.git",
"git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl.git",
"git clone --branch main --depth 1 https://github.com/Ensembl/ensembl-hive.git",
"git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl-io.git",
"git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl-funcgen.git",
"git clone --branch release-1-6-924 --depth 1 https://github.com/bioperl/bioperl-live.git",
"git clone --branch 1.9 --depth 1 https://github.com/samtools/htslib.git",
"cd htslib",
"make",
"cd ..",
"export HTSLIB_DIR=$PWD/htslib",
"cd C_code/",
"make",
"cd ../",
"export CWD=$PWD",
"export DEPS=$HOME/dependencies",
"mkdir -p $DEPS",
"cd $DEPS",
"$CWD/travisci/get_dependencies.sh",
"cd $CWD"
],
"install": [
"export CWD=$PWD",
"export PERL5LIB=$PWD/bioperl-live:$PERL5LIB",
"export DEPS=$HOME/dependencies",
"export KENT_SRC=\"$DEPS/kent-335_base/src\"",
"export MACHTYPE=$(uname -m)",
"export CFLAGS=\"-fPIC\"",
"cd $DEPS",
"$CWD/travisci/build_c.sh",
"cd $CWD",
"cpanm --quiet --installdeps --with-recommends --notest --cpanfile ensembl/cpanfile .",
"cpanm --quiet --installdeps --with-recommends --notest .",
"cpanm --quiet -n Devel::Cover::Report::Coveralls",
"cp travisci/MultiTestDB.conf.travisci modules/t/MultiTestDB.conf"
],
"script": [
"./travisci/harness.sh"
],
"jobs": {
"exclude": [
{
"perl": "5.14",
"env": [
{
"COVERALLS": "false",
"DB": "mysql"
}
]
},
{
"perl": "5.26",
"env": [
{
"COVERALLS": "true",
"DB": "mysql"
}
]
}
]
},
"notifications": {
"email": [
{
"on_success": "always",
"on_failure": "always"
}
],
"slack": [
{
"rooms": [
{
"secure": "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"
}
]
}
]
}
}
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