Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Remove redundant symbolic alt to so term hash #1643

Open
wants to merge 17 commits into
base: main
Choose a base branch
from

Accept undef in get_SO_term

5af414a
Select commit
Loading
Failed to load commit list.
Open

Remove redundant symbolic alt to so term hash #1643

Accept undef in get_SO_term
5af414a
Select commit
Loading
Failed to load commit list.
Travis CI / Travis CI - Pull Request failed Sep 26, 2024 in 19m 48s

Build Failed

The build failed, just like the previous build.

Details

This is a pull request build.

It is running a build against the merge commit, after merging #1643 Remove redundant symbolic alt to so term hash.
Any changes that have been made to the main branch before the build ran are also included.

Jobs and Stages

This build has six jobs, running in two sequential stages.

Stage 1: test

This stage failed.

Job Perl ENV OS State
3883.1 5.10 [One of the secure variables in your .travis.yml has an invalid format.] Linux failed
3883.2 5.14 [One of the secure variables in your .travis.yml has an invalid format.] Linux failed
3883.3 5.18 [One of the secure variables in your .travis.yml has an invalid format.] Linux failed
3883.4 5.22 [One of the secure variables in your .travis.yml has an invalid format.] Linux failed
3883.5 5.26 [One of the secure variables in your .travis.yml has an invalid format.] Linux failed

Stage 2: trigger_dependent_builds

This stage canceled.

Job Perl ENV OS State
3883.6 5.14 [One of the secure variables in your .travis.yml has an invalid format.] Linux canceled

Build Configuration

Build Option Setting
Language Perl
Operating System Linux (Trusty)
Perl Versions 5.10, 5.14, 5.18, 5.22, 5.26
Build Configuration
{
  "language": "perl",
  "os": [
    "linux"
  ],
  "dist": "trusty",
  "perl": [
    "5.10",
    "5.14",
    "5.18",
    "5.22",
    "5.26"
  ],
  "env": [
    "jobs={:COVERALLS=>\"true\", :DB=>\"mysql\"} global=[One of the secure variables in your .travis.yml has an invalid format.]"
  ],
  "group": "deprecated",
  "addons": {
    "apt": {
      "packages": [
        "unzip",
        "mysql-server-5.6",
        "apache2",
        "libmysqlclient-dev",
        "libpng12-dev",
        "libssl-dev",
        "openssl",
        "mysql-client-5.6",
        "mysql-client-core-5.6"
      ]
    }
  },
  "before_install": [
    "export ENSEMBL_BRANCH=main",
    "git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl-test.git",
    "git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl.git",
    "git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl-io.git",
    "git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl-funcgen.git",
    "git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl-variation.git",
    "export CWD=$PWD",
    "export DEPS=$HOME/dependencies",
    "mkdir -p $DEPS",
    "cd $DEPS",
    "$CWD/travisci/get_dependencies.sh",
    "cd $CWD"
  ],
  "install": [
    "export CWD=$PWD",
    "export DEPS=$HOME/dependencies",
    "export KENT_SRC=\"$DEPS/kent-335_base/src\"",
    "export HTSLIB_DIR=\"$DEPS/htslib\"",
    "export MACHTYPE=$(uname -m)",
    "export CFLAGS=\"-fPIC\"",
    "export PERL5LIB=$DEPS/bioperl-live:$PERL5LIB",
    "cd $DEPS",
    "$CWD/travisci/build_c.sh",
    "cd $CWD",
    "$CWD/travisci/install_dependencies.sh",
    "cp travisci/MultiTestDB.conf.travisci  t/MultiTestDB.conf"
  ],
  "script": [
    "./travisci/harness.sh"
  ],
  "jobs": {
    "include": [
      {
        "stage": "trigger_dependent_builds",
        "script": [
          "./travisci/trigger-dependent-build.sh"
        ],
        "perl": "5.14"
      }
    ]
  },
  "notifications": {
    "email": [
      {
        "on_success": "always",
        "on_failure": "always"
      }
    ]
  }
}