Merge pull request #582 from EpistasisLab/dependabot/npm_and_yarn/lab… #469
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| name: Aliro CI/CD | |
| # Controls when the action will run. | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| build_int_test: | |
| name: Integration Tests | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v2 | |
| # Runs a single command using the runners shell | |
| - name: Build Docker Images | |
| run: docker-compose -f ./docker-compose-int-test.yml build -m 8g | |
| # Runs a set of commands using the runners shell | |
| - name: Run Integration Tests | |
| run: | | |
| docker-compose -f ./docker-compose-int-test.yml run tester bash -c "sh /root/wait_pennai.sh && npm test" | |
| docker-compose -f ./docker-compose-int-test.yml down | |
| build_web_app: | |
| name: Unit Tests for Webapp | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.7' | |
| # Runs a single command using the runners shell | |
| - name: Build Docker Images | |
| run: | | |
| docker-compose -f ./docker-compose-unit-test.yml build -m 8g | |
| # Runs a set of commands using the runners shell | |
| - name: Run Unit Tests | |
| run: | | |
| git lfs fetch --all | |
| docker-compose -f ./docker-compose-unit-test.yml up --abort-on-container-exit -V | |
| - name: Coveralls | |
| uses: AndreMiras/coveralls-python-action@develop | |
| with: | |
| parallel: true | |
| flag-name: Unit Test for webapp | |
| build_pypkg: | |
| name: Unit Tests for scikit-learn API | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.7' | |
| - name: Build Docker Images | |
| run: | | |
| pip install coveralls | |
| docker-compose -f ./docker-compose-unit-test.yml build -m 8g | |
| # Runs a set of commands using the runners shell | |
| - name: Run Unit Tests | |
| run: | | |
| git lfs fetch --all | |
| git lfs pull | |
| docker run -v $(pwd):/appsrc -w /appsrc aliro_unit_tester coverage run -m nose -s -v ai/tests/test_sklearn_api.py | |
| coverage combine | |
| - name: Coveralls | |
| uses: AndreMiras/coveralls-python-action@develop | |
| with: | |
| parallel: true | |
| flag-name: Unit Test for scikit-learn api | |
| coveralls_finish: | |
| name: Publish Coveralls | |
| needs: [build_web_app, build_pypkg] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Coveralls Finished | |
| uses: AndreMiras/coveralls-python-action@develop | |
| with: | |
| parallel-finished: true | |
| deploy_pypkg: | |
| if: ${{ github.event_name == 'release' && github.event.action == 'published' }} | |
| name: Deploy python package | |
| needs: build_pypkg | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.7' | |
| - name: Install dependencies | |
| if: ${{ github.event_name == 'release' && github.event.action == 'published' }} | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install setuptools wheel twine | |
| - name: Build and publish | |
| if: ${{ github.event_name == 'release' && github.event.action == 'published' && success()}} | |
| env: | |
| TWINE_USERNAME: "__token__" | |
| TWINE_PASSWORD: ${{ secrets.PENNAI_TOKEN }} | |
| run: | | |
| python setup.py sdist bdist_wheel | |
| twine upload dist/* | |
| build_docs: | |
| # Only publish docs on master branch | |
| if: github.ref == 'refs/heads/master' | |
| name: Publish Docs | |
| needs: [build_int_test, build_web_app, build_pypkg] | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.7' | |
| - name: Build Docker Images | |
| run: | | |
| docker-compose -f ./docker-compose-doc-builder.yml build -m 8g | |
| # Building docs # Tell GitHub not to use jekyll to compile the docs | |
| - name: Building Docs | |
| run: | | |
| docker-compose -f ./docker-compose-doc-builder.yml up --abort-on-container-exit --force-recreate | |
| sudo touch target/ai_docs/html/.nojekyll | |
| - name: Deploy | |
| uses: JamesIves/github-pages-deploy-action@3.7.1 | |
| with: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| BRANCH: gh-pages | |
| FOLDER: target/ai_docs/html/ | |
| CLEAN: false # Automatically remove deleted files from the deploy branch |