From f1962f99e5c2bdc1ca55308e1669e3367e166ab7 Mon Sep 17 00:00:00 2001
From: Jennifer Medina <jmedina@stsci.edu>
Date: Mon, 12 Oct 2020 12:57:31 -0400
Subject: [PATCH 1/3] updating links from rtd to jdox

---
 exoctk/exoctk_app/templates/contam_visibility.html         | 2 +-
 exoctk/exoctk_app/templates/contam_visibility_results.html | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/exoctk/exoctk_app/templates/contam_visibility.html b/exoctk/exoctk_app/templates/contam_visibility.html
index e8689527..c4804864 100644
--- a/exoctk/exoctk_app/templates/contam_visibility.html
+++ b/exoctk/exoctk_app/templates/contam_visibility.html
@@ -30,7 +30,7 @@ <h1>Contamination & Visibility Calculator</h1>
       <b>NIRCam and MIRI options</b>: Users can calculate contamination levels for NIRCam Grism Time Series (F322W2, F444W) and MIRI Low Resolution
       Spectroscopy mode by calling this tool locally on a terminal. Please keep in mind that the calculation for the
       NIRCam and MIRI modes can take anywhere from 1-3 hours due to the complexity of their algorithms. For instructions on how to
-      generate the contamination plots for NIRCam and MIRI, please refer to our Contam Visibility <a href="https://exoctk.readthedocs.io/en/latest/source/exoctk.contam_visibility.html">ReadTheDocs page</a>.
+      generate the contamination plots for NIRCam and MIRI, please refer to our Contam Visibility <a href="https://jwst-docs.stsci.edu/display/JDOX/.Contamination+Overlap+Tool+v1.1#id-.ContaminationOverlapToolv1.1-PCCContaminationCalculatorforNIRCamandMIRImodes(AvailableLocally)">JWST-Docs page</a>.
     	</p>
       <p>Potential caveats:</p>
       <ul>
diff --git a/exoctk/exoctk_app/templates/contam_visibility_results.html b/exoctk/exoctk_app/templates/contam_visibility_results.html
index 2230ef69..2fc111ff 100644
--- a/exoctk/exoctk_app/templates/contam_visibility_results.html
+++ b/exoctk/exoctk_app/templates/contam_visibility_results.html
@@ -26,7 +26,7 @@ <h1>Contamination & Visibility Calculator</h1>
           <b>NIRCam and MIRI options</b>: Users can calculate contamination levels for NIRCam Grism Time Series (F322W2, F444W) and MIRI Low Resolution
           Spectroscopy mode by calling this tool locally on a terminal. Please keep in mind that the calculation for the
           NIRCam and MIRI modes can take anywhere from 1-3 hours due to the complexity of their algorithms. For instructions on how to
-          generate the contamination plots for NIRCam and MIRI, please refer to our Contam Visibility <a href="https://exoctk.readthedocs.io/en/latest/source/exoctk.contam_visibility.html">ReadTheDocs page</a>.
+          generate the contamination plots for NIRCam and MIRI, please refer to our Contam Visibility <a href="https://jwst-docs.stsci.edu/display/JDOX/.Contamination+Overlap+Tool+v1.1#id-.ContaminationOverlapToolv1.1-PCCContaminationCalculatorforNIRCamandMIRImodes(AvailableLocally)">JWST-Docs page</a>.
         	</p>
         <p>Potential caveats:</p>
         <ul>

From 3472ab2fc816cfb03fc5e94b3b67fdc6168233c9 Mon Sep 17 00:00:00 2001
From: Jennifer Medina <jmedina@stsci.edu>
Date: Thu, 22 Oct 2020 10:19:39 -0400
Subject: [PATCH 2/3] updated the jwst-docs links

---
 exoctk/exoctk_app/templates/contam_visibility.html         | 2 +-
 exoctk/exoctk_app/templates/contam_visibility_results.html | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/exoctk/exoctk_app/templates/contam_visibility.html b/exoctk/exoctk_app/templates/contam_visibility.html
index c4804864..262ed184 100644
--- a/exoctk/exoctk_app/templates/contam_visibility.html
+++ b/exoctk/exoctk_app/templates/contam_visibility.html
@@ -30,7 +30,7 @@ <h1>Contamination & Visibility Calculator</h1>
       <b>NIRCam and MIRI options</b>: Users can calculate contamination levels for NIRCam Grism Time Series (F322W2, F444W) and MIRI Low Resolution
       Spectroscopy mode by calling this tool locally on a terminal. Please keep in mind that the calculation for the
       NIRCam and MIRI modes can take anywhere from 1-3 hours due to the complexity of their algorithms. For instructions on how to
-      generate the contamination plots for NIRCam and MIRI, please refer to our Contam Visibility <a href="https://jwst-docs.stsci.edu/display/JDOX/.Contamination+Overlap+Tool+v1.1#id-.ContaminationOverlapToolv1.1-PCCContaminationCalculatorforNIRCamandMIRImodes(AvailableLocally)">JWST-Docs page</a>.
+      generate the contamination plots for NIRCam and MIRI, please refer to our Contam Visibility <a href="https://jwst-docs.stsci.edu/jwst-other-tools/exoplanet-observations-proposal-tools/contamination-overlap-tool#ContaminationOverlapTool-Contam_nircam_miriContaminationCalculatorforNIRCamandMIRImodes(availablelocally)">JWST-Docs page</a>.
     	</p>
       <p>Potential caveats:</p>
       <ul>
diff --git a/exoctk/exoctk_app/templates/contam_visibility_results.html b/exoctk/exoctk_app/templates/contam_visibility_results.html
index 2fc111ff..232c871f 100644
--- a/exoctk/exoctk_app/templates/contam_visibility_results.html
+++ b/exoctk/exoctk_app/templates/contam_visibility_results.html
@@ -26,7 +26,7 @@ <h1>Contamination & Visibility Calculator</h1>
           <b>NIRCam and MIRI options</b>: Users can calculate contamination levels for NIRCam Grism Time Series (F322W2, F444W) and MIRI Low Resolution
           Spectroscopy mode by calling this tool locally on a terminal. Please keep in mind that the calculation for the
           NIRCam and MIRI modes can take anywhere from 1-3 hours due to the complexity of their algorithms. For instructions on how to
-          generate the contamination plots for NIRCam and MIRI, please refer to our Contam Visibility <a href="https://jwst-docs.stsci.edu/display/JDOX/.Contamination+Overlap+Tool+v1.1#id-.ContaminationOverlapToolv1.1-PCCContaminationCalculatorforNIRCamandMIRImodes(AvailableLocally)">JWST-Docs page</a>.
+          generate the contamination plots for NIRCam and MIRI, please refer to our Contam Visibility <a href="https://jwst-docs.stsci.edu/jwst-other-tools/exoplanet-observations-proposal-tools/contamination-overlap-tool#ContaminationOverlapTool-Contam_nircam_miriContaminationCalculatorforNIRCamandMIRImodes(availablelocally)">JWST-Docs page</a>.
         	</p>
         <p>Potential caveats:</p>
         <ul>

From 006d376b77708554b74193b8192c6ae4505812d4 Mon Sep 17 00:00:00 2001
From: Jennifer Medina <jmedina@stsci.edu>
Date: Mon, 26 Oct 2020 10:48:03 -0400
Subject: [PATCH 3/3] .

---
 exoctk/contam_visibility/miniTools.py | 1 +
 1 file changed, 1 insertion(+)

diff --git a/exoctk/contam_visibility/miniTools.py b/exoctk/contam_visibility/miniTools.py
index 323e72f1..f155675b 100644
--- a/exoctk/contam_visibility/miniTools.py
+++ b/exoctk/contam_visibility/miniTools.py
@@ -11,6 +11,7 @@
 Author(s)
 ---------
 Jennifer V. Medina, 2020
+
 """
 import astropy.coordinates as crd
 import astropy.units as u