From a3fefa6ca6a7feb6581ba45049f805e927053ce1 Mon Sep 17 00:00:00 2001
From: Felix Krueger <fkrueger@altoslabs.com>
Date: Wed, 23 Aug 2023 16:20:22 +0200
Subject: [PATCH] Update bismark

Removed exit 0; statement for runs with multiple input files
---
 bismark | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/bismark b/bismark
index 8026a15..f8f272b 100755
--- a/bismark
+++ b/bismark
@@ -921,7 +921,7 @@ foreach my $filename (@filenames){
 				warn "Nucleotide coverage statistics are currently only available for BAM or CRAM files\n\n";
 			}
 		}
-		exit 0;
+		# exit 0; # will terminate after a single supplied file....
 	}
 	else{
 		# If multiple files were supplied as the command line, like so:
@@ -9994,6 +9994,6 @@ Bismark BAM/SAM OUTPUT (default):
 Each read of paired-end alignments is written out in a separate line in the above format.
 
 
-Last modified on 28 May 2023
+Last modified on 23 August 2023
 HOW_TO
 }