diff --git a/SNPsplit b/SNPsplit index 91ceedf..05060ec 100755 --- a/SNPsplit +++ b/SNPsplit @@ -25,7 +25,7 @@ use Cwd; ## Reading in a BAM or SAM file -my $pipeline_version = '0.3.1_dev'; +my $pipeline_version = '0.3.2'; my $parent_dir = getcwd(); my ($snp_file,$no_sort,$verbose,$samtools_path,$bam,$paired,$hic,$conflict,$output_dir,$singletons,$bisulfite) = process_commandline (); my %snps; # storing SNP position and sequence information for all SNPs diff --git a/SNPsplit_User_Guide.pdf b/SNPsplit_User_Guide.pdf index 9cd55c9..8ba2a38 100644 Binary files a/SNPsplit_User_Guide.pdf and b/SNPsplit_User_Guide.pdf differ diff --git a/SNPsplit_genome_preparation b/SNPsplit_genome_preparation index e853587..6aa03cc 100755 --- a/SNPsplit_genome_preparation +++ b/SNPsplit_genome_preparation @@ -27,7 +27,7 @@ use Cwd; ### it will work with any other supplied VCF file. ## Reading in a BAM or SAM file -my $pipeline_version = '0.3.1_dev'; +my $pipeline_version = '0.3.2'; my $parent_dir = getcwd(); my ($vcf_file,$strain,$strain2,$strain_index,$strain2_index,$genome_folder,$skip_filtering,$nmasking,$full_sequence,$dual_hybrid,$genome_build) = process_commandline (); @@ -1509,7 +1509,7 @@ the current working directory, so move there before invoking SNPsplit_genome_pre --version Displays version information and exits. - Last modified: 03 November 2016 + Last modified: 1 March 2017 EOF ; diff --git a/tag2sort b/tag2sort index ae2f81c..458f202 100755 --- a/tag2sort +++ b/tag2sort @@ -7,7 +7,7 @@ use Cwd; use FindBin qw($Bin); use lib "$Bin/../lib"; -## This program is Copyright (C) 2014-16, Felix Krueger (felix.krueger@babraham.ac.uk) +## This program is Copyright (C) 2014-17, Felix Krueger (felix.krueger@babraham.ac.uk) ## This program is free software: you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by @@ -27,7 +27,7 @@ my %counting; my %fhs; my $parent_dir = getcwd(); -my $SNPsplit_version = '0.3.dev'; +my $SNPsplit_version = '0.3.2'; my ($paired,$hic,$verbose,$samtools_path,$bam,$output_dir,$conflict,$singletons) = process_commandline();