From e809d53468c7fd41a3d2bdf44422d27e380e4ede Mon Sep 17 00:00:00 2001 From: Clare72 Date: Tue, 26 Nov 2019 08:53:42 +0000 Subject: [PATCH] release files 2019-11-26 --- fbdv-base.json | 148 ++--- fbdv-base.obo | 12 +- fbdv-base.owl | 32 +- fbdv-full.json | 512 +++++++++--------- fbdv-full.obo | 14 +- fbdv-full.owl | 32 +- fbdv-non-classified.json | 452 ++++++++-------- fbdv-non-classified.obo | 14 +- fbdv-non-classified.owl | 32 +- fbdv-simple.json | 180 +++--- fbdv-simple.obo | 14 +- fbdv-simple.owl | 13 +- fbdv.json | 308 ++++++----- fbdv.obo | 14 +- fbdv.owl | 32 +- fly_development.obo | 6 +- imports/go_import.json | 94 ++-- imports/go_import.obo | 2 +- imports/go_import.owl | 4 +- imports/ro_import.json | 112 ++-- imports/ro_import.obo | 2 +- imports/ro_import.owl | 8 +- reports/fbdv-edit-release.owl-obo-report.tsv | 3 - reports/robot_simple_diff.txt | 20 +- src/ontology/fbdv-non-classified.json | 452 ++++++++-------- src/ontology/fbdv-non-classified.obo | 14 +- src/ontology/fbdv-non-classified.owl | 32 +- src/ontology/fly_development.obo | 6 +- src/ontology/imports/go_import.json | 94 ++-- src/ontology/imports/go_import.obo | 2 +- src/ontology/imports/go_import.owl | 4 +- src/ontology/imports/ro_import.json | 112 ++-- src/ontology/imports/ro_import.obo | 2 +- src/ontology/imports/ro_import.owl | 8 +- src/ontology/merged-fbdv-edit-release.owl | 28 +- src/ontology/ontologyterms.txt | 298 +++++----- .../fbdv-edit-release.owl-obo-report.tsv | 3 - src/ontology/reports/robot_simple_diff.txt | 20 +- 38 files changed, 1726 insertions(+), 1409 deletions(-) diff --git a/fbdv-base.json b/fbdv-base.json index 2d6f92f..e911f47 100644 --- a/fbdv-base.json +++ b/fbdv-base.json @@ -4396,14 +4396,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007104", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007014" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005294", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00007011" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005299", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005293" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005294", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00007011" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005345", "pred" : "is_a", @@ -4508,14 +4508,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005352", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005350" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007085", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00007014" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007007", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005339" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007085", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00007014" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005265", "pred" : "is_a", @@ -4764,14 +4764,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007007", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005340" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005361", - "pred" : "http://purl.obolibrary.org/obo/RO_0002087", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005358" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005294", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005293" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005361", + "pred" : "http://purl.obolibrary.org/obo/RO_0002087", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005358" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007123", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -4832,14 +4832,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005352", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005351" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007088", - "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005369" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005299", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007011" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007088", + "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005369" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005344", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -5092,14 +5092,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005307", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007011" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007091", - "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005369" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005331", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007091", + "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005369" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005369", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -5233,11 +5233,11 @@ "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005369" }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007105", + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007095", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005369" }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007095", + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007105", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005369" }, { @@ -5289,11 +5289,11 @@ "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005342" }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007096", + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007106", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005369" }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007106", + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007096", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005369" }, { @@ -5608,14 +5608,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005289", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007012" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007026", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00007012" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005301", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007026", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00007012" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007115", "pred" : "is_a", @@ -5836,14 +5836,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007126", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005369" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005350", - "pred" : "http://purl.obolibrary.org/obo/RO_0002087", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005348" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005352", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005350", + "pred" : "http://purl.obolibrary.org/obo/RO_0002087", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005348" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007117", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -5912,14 +5912,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007109", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007108" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007002", - "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005273" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005334", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005333" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007002", + "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005273" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005277", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", @@ -6048,14 +6048,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007016", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007015" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007011", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00007024" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005351", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005346" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007011", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00007024" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007101", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -6140,26 +6140,26 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005289", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005288" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005281", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005354", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005353" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005281", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007123", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007014" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005277", - "pred" : "http://purl.obolibrary.org/obo/RO_0002087", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005276" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005266", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00004886" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005277", + "pred" : "http://purl.obolibrary.org/obo/RO_0002087", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005276" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005357", "pred" : "is_a", @@ -6276,14 +6276,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007021", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005341" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005359", - "pred" : "http://purl.obolibrary.org/obo/RO_0002087", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005357" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005342", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007001" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005359", + "pred" : "http://purl.obolibrary.org/obo/RO_0002087", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005357" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005263", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", @@ -6316,14 +6316,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007082", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007014" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005359", - "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005358" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007127", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007014" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005359", + "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005358" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007134", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", @@ -6692,14 +6692,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007124", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007123" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00004450", - "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005321" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007091", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007090" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00004450", + "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005321" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005298", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -6830,22 +6830,40 @@ "subsets" : [ ], "xrefs" : [ ], "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0002-1373-1705" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0002-7073-9172" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "https://orcid.org/0000-0001-5948-3092" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "https://orcid.org/0000-0002-0027-0858" + }, { + "pred" : "http://purl.org/dc/elements/1.1/description", + "val" : "An ontology of Drosophila melanogaster developmental stages." + }, { + "pred" : "http://purl.org/dc/elements/1.1/title", + "val" : "FlyBase Developmental Ontology (FBdv)" + }, { + "pred" : "http://purl.org/dc/terms/license", + "val" : "https://creativecommons.org/licenses/by/3.0/" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#NamespaceIdRule", "val" : "* FBdv:$sequence(8,7000,10000)$" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#date", - "val" : "11:11:2019 10:21" + "val" : "26:11:2019 08:43" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#default-namespace", "val" : "FlyBase_development_CV" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", "val" : "1.2" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Drosophila temporal ontology." } ], - "version" : "http://purl.obolibrary.org/obo/fbdv/releases/2019-11-11/fbdv-base.json" + "version" : "http://purl.obolibrary.org/obo/fbdv/releases/2019-11-26/fbdv-base.json" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ { diff --git a/fbdv-base.obo b/fbdv-base.obo index 0d09649..6877053 100644 --- a/fbdv-base.obo +++ b/fbdv-base.obo @@ -1,6 +1,6 @@ format-version: 1.2 -data-version: fbdv/releases/2019-11-11/fbdv-base.owl -date: 11:11:2019 10:21 +data-version: fbdv/releases/2019-11-26/fbdv-base.owl +date: 26:11:2019 08:43 subsetdef: gocheck_do_not_annotate "Term not to be used for direct annotation" subsetdef: gocheck_do_not_manually_annotate "Term not to be used for direct manual annotation" subsetdef: goslim_aspergillus "Aspergillus GO slim" @@ -17,8 +17,14 @@ subsetdef: gosubset_prok "Prokaryotic GO subset" synonymtypedef: systematic_synonym "Systematic synonym" EXACT default-namespace: FlyBase_development_CV namespace-id-rule: * FBdv:$sequence(8,7000,10000)$ -remark: Drosophila temporal ontology. ontology: fbdv/fbdv-base +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-1373-1705 xsd:string +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-7073-9172 xsd:string +property_value: http://purl.org/dc/elements/1.1/creator https://orcid.org/0000-0001-5948-3092 xsd:string +property_value: http://purl.org/dc/elements/1.1/creator https://orcid.org/0000-0002-0027-0858 xsd:string +property_value: http://purl.org/dc/elements/1.1/description "An ontology of Drosophila melanogaster developmental stages." xsd:string +property_value: http://purl.org/dc/elements/1.1/title "FlyBase Developmental Ontology (FBdv)" xsd:string +property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/3.0/ xsd:string [Term] id: FBdv:00000000 diff --git a/fbdv-base.owl b/fbdv-base.owl index f3b9152..1b11f81 100644 --- a/fbdv-base.owl +++ b/fbdv-base.owl @@ -1,6 +1,7 @@ - + + http://orcid.org/0000-0002-1373-1705 + http://orcid.org/0000-0002-7073-9172 + https://orcid.org/0000-0001-5948-3092 + https://orcid.org/0000-0002-0027-0858 + An ontology of Drosophila melanogaster developmental stages. + FlyBase Developmental Ontology (FBdv) + https://creativecommons.org/licenses/by/3.0/ * FBdv:$sequence(8,7000,10000)$ - 11:11:2019 10:21 + 26:11:2019 08:43 FlyBase_development_CV 1.2 - Drosophila temporal ontology. @@ -180,6 +188,24 @@ + + + + + + + + + + + + + + + + + + diff --git a/fbdv-full.json b/fbdv-full.json index a70de92..5f0bcc2 100644 --- a/fbdv-full.json +++ b/fbdv-full.json @@ -11694,14 +11694,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005291", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005288" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0009893", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0019222" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0065009", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0003674" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009893", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0019222" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1903047", "pred" : "is_a", @@ -11730,14 +11730,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00004450", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005324" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0051100", - "pred" : "http://purl.obolibrary.org/obo/RO_0002212", - "obj" : "http://purl.obolibrary.org/obo/GO_0005488" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0044237", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0009987" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051100", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0005488" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004007", "pred" : "subPropertyOf", @@ -11874,14 +11874,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005306", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002418", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002427" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0042326", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0016310" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002418", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002427" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0010648", "pred" : "is_a", @@ -11938,14 +11938,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0045977", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0040019" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002255", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002286" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007115", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007114" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002255", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002286" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007007", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -12150,14 +12150,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005369", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005366" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002088", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002222" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005318", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005304" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002088", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002222" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0010564", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", @@ -12182,14 +12182,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005357", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005356" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007015", - "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005335" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0007275", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0032501" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007015", + "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005335" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005309", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", @@ -12230,14 +12230,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005307", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007011" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002023", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002630" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007091", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005369" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002023", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002630" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005369", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -12294,22 +12294,22 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0045937", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", "obj" : "http://purl.obolibrary.org/obo/GO_0006796" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005277", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0045976", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0045448" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0042326", + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005277", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0045936" + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005270", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00004886" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042326", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0045936" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007011", "pred" : "is_a", @@ -12342,14 +12342,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002598", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002596" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0023057", - "pred" : "http://purl.obolibrary.org/obo/RO_0002212", - "obj" : "http://purl.obolibrary.org/obo/GO_0023052" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0023056", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", "obj" : "http://purl.obolibrary.org/obo/GO_0023052" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0023057", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0023052" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002015", "pred" : "subPropertyOf", @@ -12366,14 +12366,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00018001", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002012" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002523", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002514" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00018001", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002012" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051099", "pred" : "is_a", @@ -12474,14 +12474,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007021", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007020" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002333", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0000057" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0010647", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0010646" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002333", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000057" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007114", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -12578,14 +12578,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005264", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005263" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005333", - "pred" : "http://purl.obolibrary.org/obo/RO_0002087", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005332" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0031324", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048523" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005333", + "pred" : "http://purl.obolibrary.org/obo/RO_0002087", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005332" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005278", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", @@ -12638,14 +12638,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005361", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005360" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002012", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002418" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000015", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002012", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002418" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0033043", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", @@ -12690,14 +12690,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0004033", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002264" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0009966", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0048583" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007122", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005369" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009966", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048583" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0032091", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", @@ -12778,14 +12778,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0051726", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0007049" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005334", - "pred" : "http://purl.obolibrary.org/obo/RO_0002087", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005331" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048018", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0007165" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005334", + "pred" : "http://purl.obolibrary.org/obo/RO_0002087", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005331" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002414", "pred" : "subPropertyOf", @@ -12810,26 +12810,26 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005302", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007011" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0000056", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0000057" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00014201", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0000056", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0000057" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005341", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007007" - 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}, { - "sub" : "http://purl.obolibrary.org/obo/GO_0045937", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0010562" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0045839", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0007088" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0045937", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0010562" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005359", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", @@ -15927,17 +15927,17 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007012" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0016301", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/GO_0016310" + "sub" : "http://purl.obolibrary.org/obo/GO_0010647", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0007154" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0010648", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0007154" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0010647", - "pred" : "http://purl.obolibrary.org/obo/RO_0002213", - "obj" : "http://purl.obolibrary.org/obo/GO_0007154" + "sub" : "http://purl.obolibrary.org/obo/GO_0016301", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/GO_0016310" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007026", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -16058,14 +16058,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0031323", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0019222" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002596", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002500" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005355", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005354" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002596", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002500" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007135", "pred" : "is_a", @@ -16148,22 +16148,40 @@ "subsets" : [ ], "xrefs" : [ ], "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0002-1373-1705" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0002-7073-9172" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "https://orcid.org/0000-0001-5948-3092" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "https://orcid.org/0000-0002-0027-0858" + }, { + "pred" : "http://purl.org/dc/elements/1.1/description", + "val" : "An ontology of Drosophila melanogaster developmental stages." + }, { + "pred" : "http://purl.org/dc/elements/1.1/title", + "val" : "FlyBase Developmental Ontology (FBdv)" + }, { + "pred" : "http://purl.org/dc/terms/license", + "val" : "https://creativecommons.org/licenses/by/3.0/" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#NamespaceIdRule", "val" : "* FBdv:$sequence(8,7000,10000)$" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#date", - "val" : "11:11:2019 10:21" + "val" : "26:11:2019 08:43" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#default-namespace", "val" : "FlyBase_development_CV" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", "val" : "1.2" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Drosophila temporal ontology." } ], - "version" : "http://purl.obolibrary.org/obo/fbdv/releases/2019-11-11/fbdv-full.json" + "version" : "http://purl.obolibrary.org/obo/fbdv/releases/2019-11-26/fbdv-full.json" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ { @@ -16258,18 +16276,18 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0016043" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0045931", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0050789", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", - "fillerId" : "http://purl.obolibrary.org/obo/GO_0000278" + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0008150" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0050789", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0045931", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", - "fillerId" : "http://purl.obolibrary.org/obo/GO_0008150" + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0000278" } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051174", @@ -16699,17 +16717,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0005488" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048518", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048519", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0008150" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048519", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048518", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0008150" } ] }, { @@ -16853,17 +16871,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0044237" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023056", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023057", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023057", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023056", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" } ] } ], @@ -16906,29 +16924,29 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000050", "allValuesFromEdges" : [ { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" + }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000031", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000031" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000017", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000017" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000031", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000031" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000019" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000017", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000017" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", diff --git a/fbdv-full.obo b/fbdv-full.obo index 80d7454..aaba1d6 100644 --- a/fbdv-full.obo +++ b/fbdv-full.obo @@ -1,6 +1,6 @@ format-version: 1.2 -data-version: fbdv/releases/2019-11-11/fbdv-full.owl -date: 11:11:2019 10:21 +data-version: fbdv/releases/2019-11-26/fbdv-full.owl +date: 26:11:2019 08:43 subsetdef: gocheck_do_not_annotate "Term not to be used for direct annotation" subsetdef: gocheck_do_not_manually_annotate "Term not to be used for direct manual annotation" subsetdef: goslim_agr "AGR slim" @@ -23,8 +23,14 @@ subsetdef: RO:0002259 "" synonymtypedef: systematic_synonym "Systematic synonym" EXACT default-namespace: FlyBase_development_CV namespace-id-rule: * FBdv:$sequence(8,7000,10000)$ -remark: Drosophila temporal ontology. ontology: fbdv/fbdv-full +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-1373-1705 xsd:string +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-7073-9172 xsd:string +property_value: http://purl.org/dc/elements/1.1/creator https://orcid.org/0000-0001-5948-3092 xsd:string +property_value: http://purl.org/dc/elements/1.1/creator https://orcid.org/0000-0002-0027-0858 xsd:string +property_value: http://purl.org/dc/elements/1.1/description "An ontology of Drosophila melanogaster developmental stages." xsd:string +property_value: http://purl.org/dc/elements/1.1/title "FlyBase Developmental Ontology (FBdv)" xsd:string +property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/3.0/ xsd:string [Term] id: BFO:0000002 @@ -5521,5 +5527,5 @@ comment: Creating this relation as a temporary fix, pending adding the axiom occ xref: FBdv:00018001 is_transitive: true is_a: happens_during ! happens during -is_a: occurent_part_of ! occurent part of +is_a: occurent_part_of ! occurent_part_of diff --git a/fbdv-full.owl b/fbdv-full.owl index 2cfb7ac..1bd60cf 100644 --- a/fbdv-full.owl +++ b/fbdv-full.owl @@ -19,12 +19,18 @@ xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + + http://orcid.org/0000-0002-1373-1705 + http://orcid.org/0000-0002-7073-9172 + https://orcid.org/0000-0001-5948-3092 + https://orcid.org/0000-0002-0027-0858 + An ontology of Drosophila melanogaster developmental stages. + FlyBase Developmental Ontology (FBdv) + https://creativecommons.org/licenses/by/3.0/ * FBdv:$sequence(8,7000,10000)$ - 11:11:2019 10:21 + 26:11:2019 08:43 FlyBase_development_CV 1.2 - Drosophila temporal ontology. @@ -534,18 +540,36 @@ Where we have an annotation assertion + + + + + + + + + + + + + + + + + + @@ -13752,7 +13776,7 @@ Each of these 3 primitives can be composed to yield a cross-product of different The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome. GOC:mtg_15jun06 - GO_REF:0000021 + GO_REF:0000021 diff --git a/fbdv-non-classified.json b/fbdv-non-classified.json index fcb6355..c2d2ecb 100644 --- a/fbdv-non-classified.json +++ b/fbdv-non-classified.json @@ -11586,14 +11586,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005356", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005355" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0051784", - "pred" : "http://purl.obolibrary.org/obo/RO_0002212", - "obj" : "http://purl.obolibrary.org/obo/GO_0000280" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0019220", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0051174" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051784", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0000280" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000066", "pred" : "inverseOf", @@ -11938,14 +11938,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0045977", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0040019" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007115", - "pred" : "http://purl.obolibrary.org/obo/RO_0002087", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00007114" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002255", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002286" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007115", + "pred" : "http://purl.obolibrary.org/obo/RO_0002087", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00007114" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007007", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -12026,14 +12026,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005344", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005343" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0140014", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0000280" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007112", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007014" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0140014", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0000280" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005332", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -12142,14 +12142,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005369", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005366" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005318", - "pred" : "http://purl.obolibrary.org/obo/RO_0002087", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005304" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002088", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002222" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005318", + "pred" : "http://purl.obolibrary.org/obo/RO_0002087", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005304" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0010564", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", @@ -12174,14 +12174,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005357", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005356" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007015", - "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005335" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0007275", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0032501" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007015", + "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005335" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005309", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", @@ -12286,22 +12286,22 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0045937", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", "obj" : "http://purl.obolibrary.org/obo/GO_0006796" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0045976", - "pred" : "http://purl.obolibrary.org/obo/RO_0002212", - "obj" : "http://purl.obolibrary.org/obo/GO_0045448" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005277", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0042326", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0045936" + "sub" : "http://purl.obolibrary.org/obo/GO_0045976", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0045448" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005270", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00004886" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042326", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0045936" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007011", "pred" : "is_a", @@ -12322,14 +12322,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005292", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005288" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005312", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00007011" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1900120", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0043393" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005312", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00007011" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002598", "pred" : "subPropertyOf", @@ -12358,14 +12358,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002523", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002514" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00018001", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002012" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002523", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002514" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051099", "pred" : "is_a", @@ -12458,22 +12458,22 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0010647", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048522" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007021", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007020" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0010647", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0010646" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002333", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000057" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010647", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0010646" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007114", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -12630,14 +12630,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005361", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005360" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000015", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002012", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002418" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000015", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0033043", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", @@ -12810,14 +12810,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005341", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007007" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002331", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002217" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002630", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002212" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002331", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002217" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051783", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", @@ -12842,14 +12842,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002525", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/BFO_0000050" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005285", - "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005283" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004034", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004032" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005285", + "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005283" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005350", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -12982,22 +12982,22 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007121", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007120" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0000278", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0007049" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005272", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0009967", - "pred" : "http://purl.obolibrary.org/obo/RO_0002213", - "obj" : "http://purl.obolibrary.org/obo/GO_0007165" + "sub" : "http://purl.obolibrary.org/obo/GO_0000278", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0007049" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0007165" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009967", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0007165" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007088", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -13082,14 +13082,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0004035", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004033" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007011", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00007024" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005351", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005346" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007011", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00007024" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043085", "pred" : "is_a", @@ -13266,14 +13266,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0044092", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0003674" - 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}, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005277", - "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005274" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051099", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0051098" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005277", + "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005274" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051094", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -15354,14 +15354,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0050896", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0008150" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000063", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002222" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002014", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002013" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000063", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002222" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002428", "pred" : "subPropertyOf", @@ -15370,14 +15370,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007125", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007124" - 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}, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005355", - "pred" : "http://purl.obolibrary.org/obo/RO_0002087", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005354" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002596", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002500" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005355", + "pred" : "http://purl.obolibrary.org/obo/RO_0002087", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005354" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007135", "pred" : "is_a", @@ -16076,22 +16076,40 @@ "subsets" : [ ], "xrefs" : [ ], "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0002-1373-1705" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0002-7073-9172" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "https://orcid.org/0000-0001-5948-3092" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "https://orcid.org/0000-0002-0027-0858" + }, { + "pred" : "http://purl.org/dc/elements/1.1/description", + "val" : "An ontology of Drosophila melanogaster developmental stages." + }, { + "pred" : "http://purl.org/dc/elements/1.1/title", + "val" : "FlyBase Developmental Ontology (FBdv)" + }, { + "pred" : "http://purl.org/dc/terms/license", + "val" : "https://creativecommons.org/licenses/by/3.0/" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#NamespaceIdRule", "val" : "* FBdv:$sequence(8,7000,10000)$" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#date", - "val" : "11:11:2019 10:22" + "val" : "26:11:2019 08:44" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#default-namespace", "val" : "FlyBase_development_CV" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", "val" : "1.2" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Drosophila temporal ontology." } ], - "version" : "http://purl.obolibrary.org/obo/fbdv/releases/2019-11-11/fbdv-non-classified.json" + "version" : "http://purl.obolibrary.org/obo/fbdv/releases/2019-11-26/fbdv-non-classified.json" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ { @@ -16186,18 +16204,18 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0016043" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0045931", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0050789", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", - 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"propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0007165" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009967", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009968", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0007165" } ] }, { @@ -16438,17 +16456,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0008152" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048585", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048584", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0050896" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048584", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048585", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0050896" } ] }, { @@ -16627,17 +16645,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0005488" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048519", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048518", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0008150" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048518", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048519", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0008150" } ] }, { @@ -16662,17 +16680,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0000278" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010648", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010647", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0007154" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010647", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010648", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0007154" } ] }, { @@ -16690,17 +16708,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0003824" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043086", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043085", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0003824" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043085", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043086", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0003824" } ] }, { @@ -16781,17 +16799,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0044237" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023057", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023056", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023056", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023057", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" } ] } ], @@ -16834,9 +16852,13 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000050", "allValuesFromEdges" : [ { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000017", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000017" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", @@ -16846,17 +16868,13 @@ "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000017", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000017" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000031", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000031" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", diff --git a/fbdv-non-classified.obo b/fbdv-non-classified.obo index 0ae8567..6632599 100644 --- a/fbdv-non-classified.obo +++ b/fbdv-non-classified.obo @@ -1,6 +1,6 @@ format-version: 1.2 -data-version: fbdv/releases/2019-11-11/fbdv-non-classified.owl -date: 11:11:2019 10:22 +data-version: fbdv/releases/2019-11-26/fbdv-non-classified.owl +date: 26:11:2019 08:44 subsetdef: gocheck_do_not_annotate "Term not to be used for direct annotation" subsetdef: gocheck_do_not_manually_annotate "Term not to be used for direct manual annotation" subsetdef: goslim_agr "AGR slim" @@ -23,8 +23,14 @@ subsetdef: RO:0002259 "" synonymtypedef: systematic_synonym "Systematic synonym" EXACT default-namespace: FlyBase_development_CV namespace-id-rule: * FBdv:$sequence(8,7000,10000)$ -remark: Drosophila temporal ontology. ontology: fbdv/fbdv-non-classified +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-1373-1705 xsd:string +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-7073-9172 xsd:string +property_value: http://purl.org/dc/elements/1.1/creator https://orcid.org/0000-0001-5948-3092 xsd:string +property_value: http://purl.org/dc/elements/1.1/creator https://orcid.org/0000-0002-0027-0858 xsd:string +property_value: http://purl.org/dc/elements/1.1/description "An ontology of Drosophila melanogaster developmental stages." xsd:string +property_value: http://purl.org/dc/elements/1.1/title "FlyBase Developmental Ontology (FBdv)" xsd:string +property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/3.0/ xsd:string [Term] id: BFO:0000002 @@ -5517,5 +5523,5 @@ comment: Creating this relation as a temporary fix, pending adding the axiom occ xref: FBdv:00018001 is_transitive: true is_a: happens_during ! happens during -is_a: occurent_part_of ! occurent part of +is_a: occurent_part_of ! occurent_part_of diff --git a/fbdv-non-classified.owl b/fbdv-non-classified.owl index 0f454e7..58a422c 100644 --- a/fbdv-non-classified.owl +++ b/fbdv-non-classified.owl @@ -19,12 +19,18 @@ xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + + http://orcid.org/0000-0002-1373-1705 + http://orcid.org/0000-0002-7073-9172 + https://orcid.org/0000-0001-5948-3092 + https://orcid.org/0000-0002-0027-0858 + An ontology of Drosophila melanogaster developmental stages. + FlyBase Developmental Ontology (FBdv) + https://creativecommons.org/licenses/by/3.0/ * FBdv:$sequence(8,7000,10000)$ - 11:11:2019 10:22 + 26:11:2019 08:44 FlyBase_development_CV 1.2 - Drosophila temporal ontology. @@ -534,18 +540,36 @@ Where we have an annotation assertion + + + + + + + + + + + + + + + + + + @@ -13725,7 +13749,7 @@ Each of these 3 primitives can be composed to yield a cross-product of different The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome. GOC:mtg_15jun06 - GO_REF:0000021 + GO_REF:0000021 diff --git a/fbdv-simple.json b/fbdv-simple.json index c80dbc5..567596e 100644 --- a/fbdv-simple.json +++ b/fbdv-simple.json @@ -4295,14 +4295,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005316", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005315" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007081", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00007014" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007133", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005369" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007081", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00007014" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007126", "pred" : "is_a", @@ -4343,14 +4343,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007104", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007014" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005294", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00007011" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005299", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005293" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005294", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00007011" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005345", "pred" : "is_a", @@ -4455,14 +4455,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005352", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005350" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007007", - "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005339" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007085", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007014" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007007", + "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005339" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005265", "pred" : "is_a", @@ -4595,14 +4595,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007004", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007021" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005350", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005279", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005278" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005350", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005300", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -4647,14 +4647,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007025", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00006011" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007111", - "pred" : "http://purl.obolibrary.org/obo/RO_0002087", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00007110" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005261", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007111", + "pred" : "http://purl.obolibrary.org/obo/RO_0002087", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00007110" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007084", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", @@ -4719,14 +4719,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007007", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005340" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005294", - "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005293" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005361", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005358" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005294", + "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005293" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007123", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -4787,14 +4787,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005352", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005351" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007088", - "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005369" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005299", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007011" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007088", + "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005369" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005344", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -4835,14 +4835,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007001", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007012" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007007", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005287", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005285" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007007", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007079", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", @@ -5043,14 +5043,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005307", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007011" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005331", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007091", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005369" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005331", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005369", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -5236,11 +5236,11 @@ "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005342" }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007106", + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007096", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005369" }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007096", + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007106", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005369" }, { @@ -5352,11 +5352,11 @@ "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005282", + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005327", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005327", + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005282", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" }, { @@ -5559,14 +5559,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005289", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007012" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007026", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00007012" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005301", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007026", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00007012" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007115", "pred" : "is_a", @@ -5791,14 +5791,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007126", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005369" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005350", - "pred" : "http://purl.obolibrary.org/obo/RO_0002087", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005348" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005352", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005350", + "pred" : "http://purl.obolibrary.org/obo/RO_0002087", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005348" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007117", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -5975,14 +5975,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00004886", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007009" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007132", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00007014" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005272", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005270" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007132", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00007014" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005351", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -6107,14 +6107,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007123", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007014" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005277", - "pred" : "http://purl.obolibrary.org/obo/RO_0002087", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005276" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005266", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00004886" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005277", + "pred" : "http://purl.obolibrary.org/obo/RO_0002087", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005276" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005357", "pred" : "is_a", @@ -6207,14 +6207,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005339", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005338" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007121", - "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005369" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005324", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00014201" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007121", + "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005369" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005327", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -6231,14 +6231,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007021", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005341" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005342", - "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00007001" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005359", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005357" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005342", + "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00007001" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005263", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", @@ -6283,14 +6283,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005365", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00006011" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007095", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00007014" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005335", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005334" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007095", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00007014" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005367", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -6647,24 +6647,24 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007124", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007123" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007091", - "pred" : "http://purl.obolibrary.org/obo/RO_0002087", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00007090" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00004450", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005321" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007091", + "pred" : "http://purl.obolibrary.org/obo/RO_0002087", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00007090" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005298", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005297" }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005280", + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005325", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005325", + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005280", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" }, { @@ -6688,11 +6688,11 @@ "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005354" }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007135", + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007090", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007014" }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007090", + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007135", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007014" }, { @@ -6785,22 +6785,40 @@ "subsets" : [ ], "xrefs" : [ ], "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0002-1373-1705" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0002-7073-9172" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "https://orcid.org/0000-0001-5948-3092" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "https://orcid.org/0000-0002-0027-0858" + }, { + "pred" : "http://purl.org/dc/elements/1.1/description", + "val" : "An ontology of Drosophila melanogaster developmental stages." + }, { + "pred" : "http://purl.org/dc/elements/1.1/title", + "val" : "FlyBase Developmental Ontology (FBdv)" + }, { + "pred" : "http://purl.org/dc/terms/license", + "val" : "https://creativecommons.org/licenses/by/3.0/" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#NamespaceIdRule", "val" : "* FBdv:$sequence(8,7000,10000)$" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#date", - "val" : "11:11:2019 10:21" + "val" : "26:11:2019 08:43" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#default-namespace", "val" : "FlyBase_development_CV" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", "val" : "1.2" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Drosophila temporal ontology." } ], - "version" : "http://purl.obolibrary.org/obo/fbdv/releases/2019-11-11/fbdv-simple.json" + "version" : "http://purl.obolibrary.org/obo/fbdv/releases/2019-11-26/fbdv-simple.json" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ ], diff --git a/fbdv-simple.obo b/fbdv-simple.obo index 1fd2d74..d808169 100644 --- a/fbdv-simple.obo +++ b/fbdv-simple.obo @@ -1,10 +1,16 @@ format-version: 1.2 -data-version: fbdv/releases/2019-11-11/fbdv-simple.owl -date: 11:11:2019 10:21 +data-version: fbdv/releases/2019-11-26/fbdv-simple.owl +date: 26:11:2019 08:43 default-namespace: FlyBase_development_CV namespace-id-rule: * FBdv:$sequence(8,7000,10000)$ -remark: Drosophila temporal ontology. ontology: fbdv/fbdv-simple +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-1373-1705 xsd:string +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-7073-9172 xsd:string +property_value: http://purl.org/dc/elements/1.1/creator https://orcid.org/0000-0001-5948-3092 xsd:string +property_value: http://purl.org/dc/elements/1.1/creator https://orcid.org/0000-0002-0027-0858 xsd:string +property_value: http://purl.org/dc/elements/1.1/description "An ontology of Drosophila melanogaster developmental stages." xsd:string +property_value: http://purl.org/dc/elements/1.1/title "FlyBase Developmental Ontology (FBdv)" xsd:string +property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/3.0/ xsd:string [Term] id: FBdv:00000000 @@ -2060,5 +2066,5 @@ comment: Creating this relation as a temporary fix, pending adding the axiom occ xref: FBdv:00018001 is_transitive: true is_a: happens_during ! happens during -is_a: occurent_part_of ! occurent_part_of +is_a: occurent_part_of ! occurent part of diff --git a/fbdv-simple.owl b/fbdv-simple.owl index c5dfa8c..fbf042b 100644 --- a/fbdv-simple.owl +++ b/fbdv-simple.owl @@ -8,14 +8,21 @@ xmlns:xml="http://www.w3.org/XML/1998/namespace" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" + xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + + http://orcid.org/0000-0002-1373-1705 + http://orcid.org/0000-0002-7073-9172 + https://orcid.org/0000-0001-5948-3092 + https://orcid.org/0000-0002-0027-0858 + An ontology of Drosophila melanogaster developmental stages. + FlyBase Developmental Ontology (FBdv) + https://creativecommons.org/licenses/by/3.0/ * FBdv:$sequence(8,7000,10000)$ - 11:11:2019 10:21 + 26:11:2019 08:43 FlyBase_development_CV 1.2 - Drosophila temporal ontology. diff --git a/fbdv.json b/fbdv.json index 168ea34..4d1c0e8 100644 --- a/fbdv.json +++ b/fbdv.json @@ -12030,14 +12030,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005344", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005343" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0140014", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0000280" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007112", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007014" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0140014", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0000280" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005332", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -12102,14 +12102,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0010948", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0045786" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0009893", - "pred" : "http://purl.obolibrary.org/obo/RO_0002213", - "obj" : "http://purl.obolibrary.org/obo/GO_0008152" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007020", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005341" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009893", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0008152" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007125", "pred" : "is_a", @@ -12182,14 +12182,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005357", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005356" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0007275", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0032501" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007015", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005335" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0007275", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0032501" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005309", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", @@ -12302,14 +12302,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005277", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0042326", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0045936" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005270", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00004886" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042326", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0045936" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007011", "pred" : "is_a", @@ -12466,14 +12466,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0010647", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048522" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007021", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007020" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0010647", "pred" : "is_a", @@ -12482,14 +12482,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002333", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000057" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007114", - "pred" : "http://purl.obolibrary.org/obo/RO_0002087", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00007113" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007019", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005340" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007114", + "pred" : "http://purl.obolibrary.org/obo/RO_0002087", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00007113" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051338", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", @@ -12578,14 +12578,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005264", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005263" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005333", - "pred" : "http://purl.obolibrary.org/obo/RO_0002087", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005332" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0031324", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048523" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005333", + "pred" : "http://purl.obolibrary.org/obo/RO_0002087", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005332" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005278", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", @@ -12778,14 +12778,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0051726", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0007049" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005334", - "pred" : "http://purl.obolibrary.org/obo/RO_0002087", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005331" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048018", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/GO_0007165" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005334", + "pred" : "http://purl.obolibrary.org/obo/RO_0002087", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005331" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002414", "pred" : "subPropertyOf", @@ -12998,14 +12998,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007121", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007120" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0000278", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0007049" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005272", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0000278", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0007049" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009967", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -13306,14 +13306,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007021", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005341" - 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"sub" : "http://purl.obolibrary.org/obo/FBdv_00007095", + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007105", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005369" }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007105", + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007095", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005369" }, { @@ -14978,14 +14978,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002506", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002410" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_2000272", - "pred" : "http://purl.obolibrary.org/obo/RO_0002212", - "obj" : "http://purl.obolibrary.org/obo/GO_0038023" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005306", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005290" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_2000272", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0038023" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009893", "pred" : "is_a", @@ -15070,14 +15070,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0051240", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048518" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005301", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007026", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007012" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005301", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002012", "pred" : "subPropertyOf", @@ -15086,14 +15086,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0051716", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0050896" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005306", - "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005304" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005318", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005317" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005306", + "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005304" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005338", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -15246,14 +15246,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0032501", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0008150" - 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}, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000063", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002222" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002014", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002013" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000063", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002222" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002428", "pred" : "subPropertyOf", @@ -16148,22 +16148,40 @@ "subsets" : [ ], "xrefs" : [ ], "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0002-1373-1705" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0002-7073-9172" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "https://orcid.org/0000-0001-5948-3092" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "https://orcid.org/0000-0002-0027-0858" + }, { + "pred" : "http://purl.org/dc/elements/1.1/description", + "val" : "An ontology of Drosophila melanogaster developmental stages." + }, { + "pred" : "http://purl.org/dc/elements/1.1/title", + "val" : "FlyBase Developmental Ontology (FBdv)" + }, { + "pred" : "http://purl.org/dc/terms/license", + "val" : "https://creativecommons.org/licenses/by/3.0/" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#NamespaceIdRule", "val" : "* FBdv:$sequence(8,7000,10000)$" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#date", - "val" : "11:11:2019 10:21" + "val" : "26:11:2019 08:43" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#default-namespace", "val" : "FlyBase_development_CV" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", "val" : "1.2" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Drosophila temporal ontology." } ], - "version" : "http://purl.obolibrary.org/obo/fbdv/releases/2019-11-11" + "version" : "http://purl.obolibrary.org/obo/fbdv/releases/2019-11-26" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ { @@ -16209,17 +16227,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0140014" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048523", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048522", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0009987" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048522", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048523", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0009987" } ] }, { @@ -16258,18 +16276,18 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0016043" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0050789", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0045931", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", - "fillerId" : "http://purl.obolibrary.org/obo/GO_0008150" + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0000278" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0045931", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0050789", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", - "fillerId" : "http://purl.obolibrary.org/obo/GO_0000278" + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0008150" } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051174", @@ -16391,17 +16409,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0006793" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009967", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009968", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0007165" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009968", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009967", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0007165" } ] }, { @@ -16468,17 +16486,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0007154" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051241", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051240", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0032501" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051240", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051241", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0032501" } ] }, { @@ -16608,17 +16626,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0005102" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051347", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051348", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0016740" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051348", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051347", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0016740" } ] }, { @@ -16906,29 +16924,29 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000050", "allValuesFromEdges" : [ { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" + }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000031", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000031" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000017", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000017" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000031", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000031" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000019" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000017", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000017" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", diff --git a/fbdv.obo b/fbdv.obo index ae77ed6..66cef77 100644 --- a/fbdv.obo +++ b/fbdv.obo @@ -1,10 +1,16 @@ format-version: 1.2 -data-version: fbdv/releases/2019-11-11 -date: 11:11:2019 10:21 +data-version: fbdv/releases/2019-11-26 +date: 26:11:2019 08:43 default-namespace: FlyBase_development_CV namespace-id-rule: * FBdv:$sequence(8,7000,10000)$ -remark: Drosophila temporal ontology. ontology: fbdv.obo +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-1373-1705 xsd:string +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-7073-9172 xsd:string +property_value: http://purl.org/dc/elements/1.1/creator https://orcid.org/0000-0001-5948-3092 xsd:string +property_value: http://purl.org/dc/elements/1.1/creator https://orcid.org/0000-0002-0027-0858 xsd:string +property_value: http://purl.org/dc/elements/1.1/description "An ontology of Drosophila melanogaster developmental stages." xsd:string +property_value: http://purl.org/dc/elements/1.1/title "FlyBase Developmental Ontology (FBdv)" xsd:string +property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/3.0/ xsd:string [Term] id: FBdv:00000000 @@ -2060,5 +2066,5 @@ comment: Creating this relation as a temporary fix, pending adding the axiom occ xref: FBdv:00018001 is_transitive: true is_a: happens_during ! happens during -is_a: occurent_part_of ! occurent part of +is_a: occurent_part_of ! occurent_part_of diff --git a/fbdv.owl b/fbdv.owl index 918b475..0f434e1 100644 --- a/fbdv.owl +++ b/fbdv.owl @@ -19,12 +19,18 @@ xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + + http://orcid.org/0000-0002-1373-1705 + http://orcid.org/0000-0002-7073-9172 + https://orcid.org/0000-0001-5948-3092 + https://orcid.org/0000-0002-0027-0858 + An ontology of Drosophila melanogaster developmental stages. + FlyBase Developmental Ontology (FBdv) + https://creativecommons.org/licenses/by/3.0/ * FBdv:$sequence(8,7000,10000)$ - 11:11:2019 10:21 + 26:11:2019 08:43 FlyBase_development_CV 1.2 - Drosophila temporal ontology. @@ -534,18 +540,36 @@ Where we have an annotation assertion + + + + + + + + + + + + + + + + + + @@ -13752,7 +13776,7 @@ Each of these 3 primitives can be composed to yield a cross-product of different The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome. GOC:mtg_15jun06 - GO_REF:0000021 + GO_REF:0000021 diff --git a/fly_development.obo b/fly_development.obo index bb702bd..fe4b353 100644 --- a/fly_development.obo +++ b/fly_development.obo @@ -1,9 +1,8 @@ format-version: 1.2 -data-version: 2019-11-11 -date: 11:11:2019 10:22 +data-version: 2019-11-26 +date: 26:11:2019 08:44 default-namespace: FlyBase development CV namespace-id-rule: * FBdv:$sequence(8,7000,10000)$ -remark: Drosophila temporal ontology. ontology: fbdv/fbdv-simple [Term] @@ -2015,6 +2014,7 @@ name: overlaps def: "x overlaps y if and only if there exists some z such that x has part z and z part of y" [] xref: RO:0002131 holds_over_chain: has_part overlaps +is_a: happens_during ! happens_during [Typedef] id: preceded_by diff --git a/imports/go_import.json b/imports/go_import.json index 1860474..90afbb4 100644 --- a/imports/go_import.json +++ b/imports/go_import.json @@ -1700,13 +1700,13 @@ "xrefs" : [ "GOC:ai" ] }, "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "positive regulation of cellular component organization and biogenesis", - "xrefs" : [ "GOC:mah" ] - }, { "pred" : "hasExactSynonym", "val" : "upregulation of cell organization", "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "positive regulation of cellular component organization and biogenesis", + "xrefs" : [ "GOC:mah" ] }, { "pred" : "hasExactSynonym", "val" : "up regulation of cell organization", @@ -4568,14 +4568,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0045936", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0010563" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0009968", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0048585" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0033673", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0043549" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009968", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048585" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0090068", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -5136,14 +5136,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0008152", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0008150" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0051329", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0051325" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0019220", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0006796" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051329", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0051325" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051329", "pred" : "is_a", @@ -5184,14 +5184,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0051100", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0044092" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0023056", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0048518" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051240", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0051239" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0023056", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048518" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0007165", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", @@ -5244,14 +5244,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0051129", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048523" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0048523", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0050794" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051785", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0010638" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048523", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0050794" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009892", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", @@ -5400,14 +5400,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0000278", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0007049" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0009967", - "pred" : "http://purl.obolibrary.org/obo/RO_0002213", - "obj" : "http://purl.obolibrary.org/obo/GO_0007165" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0007165" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009967", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0007165" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048285", "pred" : "is_a", @@ -5870,7 +5870,7 @@ "subsets" : [ ], "xrefs" : [ ], "basicPropertyValues" : [ ], - "version" : "http://purl.obolibrary.org/obo/fbdv/releases/2019-11-11/imports/go_import.owl" + "version" : "http://purl.obolibrary.org/obo/fbdv/releases/2019-11-26/imports/go_import.owl" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ { @@ -5909,18 +5909,18 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0005488" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051784", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0090068", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", - "fillerId" : "http://purl.obolibrary.org/obo/GO_0000280" + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0022402" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0090068", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051784", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", - "fillerId" : "http://purl.obolibrary.org/obo/GO_0022402" + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0000280" } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/GO_0045787", @@ -5944,17 +5944,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0005102" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048522", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048523", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0009987" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048523", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048522", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0009987" } ] }, { @@ -6280,17 +6280,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010563", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010562", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0006793" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010562", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010563", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0006793" } ] }, { @@ -6350,17 +6350,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0000278" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009967", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009968", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0007165" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009968", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009967", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0007165" } ] }, { @@ -6546,17 +6546,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0044237" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023057", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023056", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023056", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023057", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" } ] } ], diff --git a/imports/go_import.obo b/imports/go_import.obo index 8ae6a49..796c78b 100644 --- a/imports/go_import.obo +++ b/imports/go_import.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: fbdv/releases/2019-11-11/imports/go_import.owl +data-version: fbdv/releases/2019-11-26/imports/go_import.owl subsetdef: gocheck_do_not_annotate "Term not to be used for direct annotation" subsetdef: gocheck_do_not_manually_annotate "Term not to be used for direct manual annotation" subsetdef: goslim_agr "AGR slim" diff --git a/imports/go_import.owl b/imports/go_import.owl index 26843c5..2952f16 100644 --- a/imports/go_import.owl +++ b/imports/go_import.owl @@ -11,7 +11,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + @@ -4351,7 +4351,7 @@ The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome. GOC:mtg_15jun06 - GO_REF:0000021 + GO_REF:0000021 diff --git a/imports/ro_import.json b/imports/ro_import.json index 6302c95..3cfc82e 100644 --- a/imports/ro_import.json +++ b/imports/ro_import.json @@ -3005,14 +3005,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002525", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/BFO_0000050" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002088", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002091" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004034", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004032" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002088", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002091" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002525", "pred" : "subPropertyOf", @@ -3045,14 +3045,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002447", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002436" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000040", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002211", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002411" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000040", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002085", "pred" : "inverseOf", @@ -3165,6 +3165,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002216", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002024", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002022" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002014", "pred" : "subPropertyOf", @@ -3173,10 +3177,6 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000063", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002222" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002024", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002022" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002387", "pred" : "subPropertyOf", @@ -3189,14 +3189,14 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000050", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002131" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002431", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002304", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004047" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002431", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002335", "pred" : "subPropertyOf", @@ -3321,14 +3321,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002352", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002212", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002335" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004032", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002264" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002212", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002335" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002432", "pred" : "subPropertyOf", @@ -3405,14 +3405,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002630", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002578" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002234", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002353" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002598", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002596" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002234", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002353" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", "pred" : "is_a", @@ -3429,14 +3429,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002254", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002258" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0016772", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0016740" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002352", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000056" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0016772", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0016740" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002523", "pred" : "subPropertyOf", @@ -3489,26 +3489,26 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002023", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002022" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002258", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002286" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002305", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004046" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002258", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002286" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002608", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002410" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002432", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002017", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002018" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002432", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002388", "pred" : "subPropertyOf", @@ -3637,14 +3637,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002086", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002222" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000015", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002012", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002418" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000015", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000062", "pred" : "subPropertyOf", @@ -3659,7 +3659,7 @@ "subsets" : [ ], "xrefs" : [ ], "basicPropertyValues" : [ ], - "version" : "http://purl.obolibrary.org/obo/fbdv/releases/2019-11-11/imports/ro_import.owl" + "version" : "http://purl.obolibrary.org/obo/fbdv/releases/2019-11-26/imports/ro_import.owl" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ ], @@ -3702,17 +3702,13 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000050", "allValuesFromEdges" : [ { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000019" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000017", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000017" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000019" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", @@ -3721,14 +3717,18 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000031", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000031" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000017", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000017" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" } ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002506", @@ -3808,12 +3808,12 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002086", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002093", "http://purl.obolibrary.org/obo/BFO_0000062" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002329", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/RO_0002215" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000066", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000066", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002329", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/RO_0002215" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0004035", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002305" ] diff --git a/imports/ro_import.obo b/imports/ro_import.obo index 1bf9475..5ae86cd 100644 --- a/imports/ro_import.obo +++ b/imports/ro_import.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: fbdv/releases/2019-11-11/imports/ro_import.owl +data-version: fbdv/releases/2019-11-26/imports/ro_import.owl subsetdef: ro-eco "" subsetdef: RO:0002259 "" ontology: fbdv/imports/ro_import diff --git a/imports/ro_import.owl b/imports/ro_import.owl index 33daf85..6887015 100644 --- a/imports/ro_import.owl +++ b/imports/ro_import.owl @@ -17,7 +17,7 @@ xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + @@ -266,6 +266,12 @@ Where we have an annotation assertion + + + + + + diff --git a/reports/fbdv-edit-release.owl-obo-report.tsv b/reports/fbdv-edit-release.owl-obo-report.tsv index e8ab5b2..c426d08 100644 --- a/reports/fbdv-edit-release.owl-obo-report.tsv +++ b/reports/fbdv-edit-release.owl-obo-report.tsv @@ -1,7 +1,4 @@ Level Rule Name Subject Property Value -ERROR missing_ontology_description fbdv.owl dc11:description -ERROR missing_ontology_license fbdv.owl dc:license -ERROR missing_ontology_title fbdv.owl dc11:title WARN missing_definition BFO:0000051 IAO:0000115 WARN missing_definition BFO:0000062 IAO:0000115 WARN missing_definition FBdv:00004886 IAO:0000115 diff --git a/reports/robot_simple_diff.txt b/reports/robot_simple_diff.txt index 72670dd..2055e1f 100644 --- a/reports/robot_simple_diff.txt +++ b/reports/robot_simple_diff.txt @@ -1,9 +1,15 @@ -3 axioms in Ontology 1 but not in Ontology 2: -- Annotation( "11:11:2019 10:21"^^xsd:string) -- AnnotationAssertion(rdfs:label "substage_of"^^xsd:string) -- OntologyID(OntologyIRI() VersionIRI()) +9 axioms in Ontology 1 but not in Ontology 2: +- Annotation( "http://orcid.org/0000-0002-1373-1705"^^xsd:string) +- Annotation( "http://orcid.org/0000-0002-7073-9172"^^xsd:string) +- Annotation( "https://orcid.org/0000-0001-5948-3092"^^xsd:string) +- Annotation( "https://orcid.org/0000-0002-0027-0858"^^xsd:string) +- Annotation( "An ontology of Drosophila melanogaster developmental stages."^^xsd:string) +- Annotation( "FlyBase Developmental Ontology (FBdv)"^^xsd:string) +- Annotation( "https://creativecommons.org/licenses/by/3.0/"^^xsd:string) +- Annotation( "26:11:2019 08:43"^^xsd:string) +- OntologyID(OntologyIRI() VersionIRI()) 3 axioms in Ontology 2 but not in Ontology 1: -+ Annotation( "21:10:2019 12:48"^^xsd:string) -+ AnnotationAssertion(rdfs:label "substage of"^^xsd:string) -+ OntologyID(OntologyIRI() VersionIRI()) ++ Annotation( "11:11:2019 10:21"^^xsd:string) ++ Annotation(rdfs:comment "Drosophila temporal ontology."^^xsd:string) ++ OntologyID(OntologyIRI() VersionIRI()) diff --git a/src/ontology/fbdv-non-classified.json b/src/ontology/fbdv-non-classified.json index fcb6355..c2d2ecb 100644 --- a/src/ontology/fbdv-non-classified.json +++ b/src/ontology/fbdv-non-classified.json @@ -11586,14 +11586,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005356", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005355" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0051784", - "pred" : "http://purl.obolibrary.org/obo/RO_0002212", - "obj" : "http://purl.obolibrary.org/obo/GO_0000280" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0019220", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0051174" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051784", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0000280" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000066", "pred" : "inverseOf", @@ -11938,14 +11938,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0045977", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0040019" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007115", - "pred" : "http://purl.obolibrary.org/obo/RO_0002087", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00007114" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002255", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002286" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007115", + "pred" : "http://purl.obolibrary.org/obo/RO_0002087", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00007114" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007007", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -12026,14 +12026,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005344", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005343" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0140014", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0000280" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007112", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007014" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0140014", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0000280" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005332", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -12142,14 +12142,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005369", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005366" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005318", - "pred" : "http://purl.obolibrary.org/obo/RO_0002087", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005304" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002088", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002222" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005318", + "pred" : "http://purl.obolibrary.org/obo/RO_0002087", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005304" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0010564", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", @@ -12174,14 +12174,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005357", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005356" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007015", - "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005335" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0007275", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0032501" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007015", + "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005335" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005309", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", @@ -12286,22 +12286,22 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0045937", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", "obj" : "http://purl.obolibrary.org/obo/GO_0006796" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0045976", - "pred" : "http://purl.obolibrary.org/obo/RO_0002212", - "obj" : "http://purl.obolibrary.org/obo/GO_0045448" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005277", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0042326", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0045936" + "sub" : "http://purl.obolibrary.org/obo/GO_0045976", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0045448" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005270", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00004886" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0042326", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0045936" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007011", "pred" : "is_a", @@ -12322,14 +12322,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005292", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005288" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005312", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00007011" }, { "sub" : "http://purl.obolibrary.org/obo/GO_1900120", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0043393" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005312", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00007011" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002598", "pred" : "subPropertyOf", @@ -12358,14 +12358,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007002", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002523", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002514" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00018001", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002012" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002523", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002514" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051099", "pred" : "is_a", @@ -12458,22 +12458,22 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0010647", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048522" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007021", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007020" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0010647", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0010646" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002333", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000057" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010647", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0010646" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007114", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -12630,14 +12630,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005361", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005360" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000015", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002012", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002418" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000015", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0033043", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", @@ -12810,14 +12810,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00005341", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007007" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002331", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002217" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002630", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002212" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002331", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002217" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051783", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", @@ -12842,14 +12842,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002525", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/BFO_0000050" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005285", - "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005283" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004034", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004032" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005285", + "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005283" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005350", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -12982,22 +12982,22 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007121", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007120" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0000278", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0007049" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005272", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0009967", - "pred" : "http://purl.obolibrary.org/obo/RO_0002213", - "obj" : "http://purl.obolibrary.org/obo/GO_0007165" + "sub" : "http://purl.obolibrary.org/obo/GO_0000278", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0007049" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0007165" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009967", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0007165" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007088", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", @@ -13082,14 +13082,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0004035", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004033" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007011", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00007024" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005351", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005346" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007011", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00007024" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043085", "pred" : "is_a", @@ -13266,14 +13266,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0044092", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0003674" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005324", - "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00014201" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007121", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005369" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005324", + "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00014201" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005355", "pred" : "is_a", @@ -13706,14 +13706,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_2000273", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", "obj" : "http://purl.obolibrary.org/obo/GO_0038023" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00004450", - "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005321" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007091", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007090" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00004450", + "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005321" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0010562", "pred" : "is_a", @@ -13994,14 +13994,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0051128", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0016043" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00007075", - "pred" : "http://purl.obolibrary.org/obo/RO_0002087", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005366" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002526", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002514" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00007075", + "pred" : "http://purl.obolibrary.org/obo/RO_0002087", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005366" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007007", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", @@ -14038,14 +14038,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002088", "pred" : "inverseOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002091" - 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}, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005362", - "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005361" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002447", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002436" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005362", + "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005361" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000040", "pred" : "is_a", @@ -15270,14 +15270,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007109", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007108" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005334", - "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005333" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007002", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005273" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005334", + "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005333" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0006793", "pred" : "is_a", @@ -15286,14 +15286,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0048018", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0030546" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005277", - "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005274" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051099", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0051098" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005277", + "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005274" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051094", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -15354,14 +15354,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0050896", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0008150" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000063", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002222" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002014", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002013" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000063", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002222" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002428", "pred" : "subPropertyOf", @@ -15370,14 +15370,14 @@ "sub" : "http://purl.obolibrary.org/obo/FBdv_00007125", "pred" : "http://purl.obolibrary.org/obo/RO_0002087", "obj" : "http://purl.obolibrary.org/obo/FBdv_00007124" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00004886", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00007009" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002431", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00004886", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00007009" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0050790", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", @@ -15418,22 +15418,22 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0000280", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048285" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0043086", - "pred" : "http://purl.obolibrary.org/obo/RO_0002212", - "obj" : "http://purl.obolibrary.org/obo/GO_0003824" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0043085", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", "obj" : "http://purl.obolibrary.org/obo/GO_0003824" }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0010469", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0065009" + "sub" : "http://purl.obolibrary.org/obo/GO_0043086", + "pred" : "http://purl.obolibrary.org/obo/RO_0002212", + "obj" : "http://purl.obolibrary.org/obo/GO_0003824" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002431", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002500" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0010469", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0065009" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007099", "pred" : "http://purl.obolibrary.org/obo/FBdv_00018001", @@ -15498,14 +15498,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0051100", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0051098" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005354", - "pred" : "http://purl.obolibrary.org/obo/RO_0002087", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005353" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00005281", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/FBdv_00005259" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005354", + "pred" : "http://purl.obolibrary.org/obo/RO_0002087", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005353" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002559", "pred" : "inverseOf", @@ -15986,14 +15986,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0031323", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0019222" - }, { - "sub" : "http://purl.obolibrary.org/obo/FBdv_00005355", - "pred" : "http://purl.obolibrary.org/obo/RO_0002087", - "obj" : "http://purl.obolibrary.org/obo/FBdv_00005354" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002596", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002500" + }, { + "sub" : "http://purl.obolibrary.org/obo/FBdv_00005355", + "pred" : "http://purl.obolibrary.org/obo/RO_0002087", + "obj" : "http://purl.obolibrary.org/obo/FBdv_00005354" }, { "sub" : "http://purl.obolibrary.org/obo/FBdv_00007135", "pred" : "is_a", @@ -16076,22 +16076,40 @@ "subsets" : [ ], "xrefs" : [ ], "basicPropertyValues" : [ { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0002-1373-1705" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "http://orcid.org/0000-0002-7073-9172" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "https://orcid.org/0000-0001-5948-3092" + }, { + "pred" : "http://purl.org/dc/elements/1.1/creator", + "val" : "https://orcid.org/0000-0002-0027-0858" + }, { + "pred" : "http://purl.org/dc/elements/1.1/description", + "val" : "An ontology of Drosophila melanogaster developmental stages." + }, { + "pred" : "http://purl.org/dc/elements/1.1/title", + "val" : "FlyBase Developmental Ontology (FBdv)" + }, { + "pred" : "http://purl.org/dc/terms/license", + "val" : "https://creativecommons.org/licenses/by/3.0/" + }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#NamespaceIdRule", "val" : "* FBdv:$sequence(8,7000,10000)$" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#date", - "val" : "11:11:2019 10:22" + "val" : "26:11:2019 08:44" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#default-namespace", "val" : "FlyBase_development_CV" }, { "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion", "val" : "1.2" - }, { - "pred" : "http://www.w3.org/2000/01/rdf-schema#comment", - "val" : "Drosophila temporal ontology." } ], - "version" : "http://purl.obolibrary.org/obo/fbdv/releases/2019-11-11/fbdv-non-classified.json" + "version" : "http://purl.obolibrary.org/obo/fbdv/releases/2019-11-26/fbdv-non-classified.json" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ { @@ -16186,18 +16204,18 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0016043" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0045931", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0050789", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", - "fillerId" : "http://purl.obolibrary.org/obo/GO_0000278" + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0008150" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0050789", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0045931", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002211", - "fillerId" : "http://purl.obolibrary.org/obo/GO_0008150" + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0000278" } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051174", @@ -16319,17 +16337,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0006793" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009968", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009967", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0007165" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009967", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009968", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0007165" } ] }, { @@ -16438,17 +16456,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0008152" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048585", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048584", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0050896" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048584", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048585", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0050896" } ] }, { @@ -16627,17 +16645,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0005488" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048519", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048518", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0008150" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048518", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048519", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0008150" } ] }, { @@ -16662,17 +16680,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0000278" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010648", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010647", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0007154" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010647", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010648", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0007154" } ] }, { @@ -16690,17 +16708,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0003824" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043086", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043085", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0003824" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043085", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0043086", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0003824" } ] }, { @@ -16781,17 +16799,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0044237" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023057", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023056", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023056", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023057", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" } ] } ], @@ -16834,9 +16852,13 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000050", "allValuesFromEdges" : [ { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000017", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000017" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", @@ -16846,17 +16868,13 @@ "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000017", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000017" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000031", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000031" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000002" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", diff --git a/src/ontology/fbdv-non-classified.obo b/src/ontology/fbdv-non-classified.obo index 0ae8567..6632599 100644 --- a/src/ontology/fbdv-non-classified.obo +++ b/src/ontology/fbdv-non-classified.obo @@ -1,6 +1,6 @@ format-version: 1.2 -data-version: fbdv/releases/2019-11-11/fbdv-non-classified.owl -date: 11:11:2019 10:22 +data-version: fbdv/releases/2019-11-26/fbdv-non-classified.owl +date: 26:11:2019 08:44 subsetdef: gocheck_do_not_annotate "Term not to be used for direct annotation" subsetdef: gocheck_do_not_manually_annotate "Term not to be used for direct manual annotation" subsetdef: goslim_agr "AGR slim" @@ -23,8 +23,14 @@ subsetdef: RO:0002259 "" synonymtypedef: systematic_synonym "Systematic synonym" EXACT default-namespace: FlyBase_development_CV namespace-id-rule: * FBdv:$sequence(8,7000,10000)$ -remark: Drosophila temporal ontology. ontology: fbdv/fbdv-non-classified +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-1373-1705 xsd:string +property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-7073-9172 xsd:string +property_value: http://purl.org/dc/elements/1.1/creator https://orcid.org/0000-0001-5948-3092 xsd:string +property_value: http://purl.org/dc/elements/1.1/creator https://orcid.org/0000-0002-0027-0858 xsd:string +property_value: http://purl.org/dc/elements/1.1/description "An ontology of Drosophila melanogaster developmental stages." xsd:string +property_value: http://purl.org/dc/elements/1.1/title "FlyBase Developmental Ontology (FBdv)" xsd:string +property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/3.0/ xsd:string [Term] id: BFO:0000002 @@ -5517,5 +5523,5 @@ comment: Creating this relation as a temporary fix, pending adding the axiom occ xref: FBdv:00018001 is_transitive: true is_a: happens_during ! happens during -is_a: occurent_part_of ! occurent part of +is_a: occurent_part_of ! occurent_part_of diff --git a/src/ontology/fbdv-non-classified.owl b/src/ontology/fbdv-non-classified.owl index 0f454e7..58a422c 100644 --- a/src/ontology/fbdv-non-classified.owl +++ b/src/ontology/fbdv-non-classified.owl @@ -19,12 +19,18 @@ xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + + http://orcid.org/0000-0002-1373-1705 + http://orcid.org/0000-0002-7073-9172 + https://orcid.org/0000-0001-5948-3092 + https://orcid.org/0000-0002-0027-0858 + An ontology of Drosophila melanogaster developmental stages. + FlyBase Developmental Ontology (FBdv) + https://creativecommons.org/licenses/by/3.0/ * FBdv:$sequence(8,7000,10000)$ - 11:11:2019 10:22 + 26:11:2019 08:44 FlyBase_development_CV 1.2 - Drosophila temporal ontology. @@ -534,18 +540,36 @@ Where we have an annotation assertion + + + + + + + + + + + + + + + + + + @@ -13725,7 +13749,7 @@ Each of these 3 primitives can be composed to yield a cross-product of different The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome. GOC:mtg_15jun06 - GO_REF:0000021 + GO_REF:0000021 diff --git a/src/ontology/fly_development.obo b/src/ontology/fly_development.obo index bb702bd..fe4b353 100644 --- a/src/ontology/fly_development.obo +++ b/src/ontology/fly_development.obo @@ -1,9 +1,8 @@ format-version: 1.2 -data-version: 2019-11-11 -date: 11:11:2019 10:22 +data-version: 2019-11-26 +date: 26:11:2019 08:44 default-namespace: FlyBase development CV namespace-id-rule: * FBdv:$sequence(8,7000,10000)$ -remark: Drosophila temporal ontology. ontology: fbdv/fbdv-simple [Term] @@ -2015,6 +2014,7 @@ name: overlaps def: "x overlaps y if and only if there exists some z such that x has part z and z part of y" [] xref: RO:0002131 holds_over_chain: has_part overlaps +is_a: happens_during ! happens_during [Typedef] id: preceded_by diff --git a/src/ontology/imports/go_import.json b/src/ontology/imports/go_import.json index 1860474..90afbb4 100644 --- a/src/ontology/imports/go_import.json +++ b/src/ontology/imports/go_import.json @@ -1700,13 +1700,13 @@ "xrefs" : [ "GOC:ai" ] }, "synonyms" : [ { - "pred" : "hasRelatedSynonym", - "val" : "positive regulation of cellular component organization and biogenesis", - "xrefs" : [ "GOC:mah" ] - }, { "pred" : "hasExactSynonym", "val" : "upregulation of cell organization", "xrefs" : [ ] + }, { + "pred" : "hasRelatedSynonym", + "val" : "positive regulation of cellular component organization and biogenesis", + "xrefs" : [ "GOC:mah" ] }, { "pred" : "hasExactSynonym", "val" : "up regulation of cell organization", @@ -4568,14 +4568,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0045936", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0010563" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0009968", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0048585" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0033673", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0043549" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009968", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048585" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0090068", "pred" : "http://purl.obolibrary.org/obo/RO_0002213", @@ -5136,14 +5136,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0008152", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0008150" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0051329", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0051325" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0019220", "pred" : "http://purl.obolibrary.org/obo/RO_0002211", "obj" : "http://purl.obolibrary.org/obo/GO_0006796" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0051329", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0051325" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051329", "pred" : "is_a", @@ -5184,14 +5184,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0051100", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0044092" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0023056", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0048518" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051240", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0051239" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0023056", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0048518" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0007165", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", @@ -5244,14 +5244,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0051129", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0048523" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0048523", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0050794" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0051785", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0010638" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0048523", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0050794" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009892", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", @@ -5400,14 +5400,14 @@ "sub" : "http://purl.obolibrary.org/obo/GO_0000278", "pred" : "is_a", "obj" : "http://purl.obolibrary.org/obo/GO_0007049" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0009967", - "pred" : "http://purl.obolibrary.org/obo/RO_0002213", - "obj" : "http://purl.obolibrary.org/obo/GO_0007165" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0009968", "pred" : "http://purl.obolibrary.org/obo/RO_0002212", "obj" : "http://purl.obolibrary.org/obo/GO_0007165" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0009967", + "pred" : "http://purl.obolibrary.org/obo/RO_0002213", + "obj" : "http://purl.obolibrary.org/obo/GO_0007165" }, { "sub" : "http://purl.obolibrary.org/obo/GO_0048285", "pred" : "is_a", @@ -5870,7 +5870,7 @@ "subsets" : [ ], "xrefs" : [ ], "basicPropertyValues" : [ ], - "version" : "http://purl.obolibrary.org/obo/fbdv/releases/2019-11-11/imports/go_import.owl" + "version" : "http://purl.obolibrary.org/obo/fbdv/releases/2019-11-26/imports/go_import.owl" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ { @@ -5909,18 +5909,18 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0005488" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051784", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0090068", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", - "fillerId" : "http://purl.obolibrary.org/obo/GO_0000280" + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0022402" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0090068", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0051784", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", - "fillerId" : "http://purl.obolibrary.org/obo/GO_0022402" + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "fillerId" : "http://purl.obolibrary.org/obo/GO_0000280" } ] }, { "definedClassId" : "http://purl.obolibrary.org/obo/GO_0045787", @@ -5944,17 +5944,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0005102" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048522", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048523", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0009987" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048523", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0048522", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0009987" } ] }, { @@ -6280,17 +6280,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010563", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010562", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0006793" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010562", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0010563", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0006793" } ] }, { @@ -6350,17 +6350,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0000278" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009967", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009968", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0007165" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009968", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0009967", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0007165" } ] }, { @@ -6546,17 +6546,17 @@ "fillerId" : "http://purl.obolibrary.org/obo/GO_0044237" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023057", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023056", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" } ] }, { - "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023056", + "definedClassId" : "http://purl.obolibrary.org/obo/GO_0023057", "genusIds" : [ "http://purl.obolibrary.org/obo/GO_0008150" ], "restrictions" : [ { - "propertyId" : "http://purl.obolibrary.org/obo/RO_0002213", + "propertyId" : "http://purl.obolibrary.org/obo/RO_0002212", "fillerId" : "http://purl.obolibrary.org/obo/GO_0023052" } ] } ], diff --git a/src/ontology/imports/go_import.obo b/src/ontology/imports/go_import.obo index 8ae6a49..796c78b 100644 --- a/src/ontology/imports/go_import.obo +++ b/src/ontology/imports/go_import.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: fbdv/releases/2019-11-11/imports/go_import.owl +data-version: fbdv/releases/2019-11-26/imports/go_import.owl subsetdef: gocheck_do_not_annotate "Term not to be used for direct annotation" subsetdef: gocheck_do_not_manually_annotate "Term not to be used for direct manual annotation" subsetdef: goslim_agr "AGR slim" diff --git a/src/ontology/imports/go_import.owl b/src/ontology/imports/go_import.owl index 26843c5..2952f16 100644 --- a/src/ontology/imports/go_import.owl +++ b/src/ontology/imports/go_import.owl @@ -11,7 +11,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + @@ -4351,7 +4351,7 @@ The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome. GOC:mtg_15jun06 - GO_REF:0000021 + GO_REF:0000021 diff --git a/src/ontology/imports/ro_import.json b/src/ontology/imports/ro_import.json index 6302c95..3cfc82e 100644 --- a/src/ontology/imports/ro_import.json +++ b/src/ontology/imports/ro_import.json @@ -3005,14 +3005,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002525", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/BFO_0000050" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002088", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002091" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004034", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004032" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002088", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002091" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002525", "pred" : "subPropertyOf", @@ -3045,14 +3045,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002447", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002436" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000040", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002211", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002411" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000040", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002085", "pred" : "inverseOf", @@ -3165,6 +3165,10 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002216", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002024", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002022" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002014", "pred" : "subPropertyOf", @@ -3173,10 +3177,6 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000063", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002222" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002024", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002022" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002387", "pred" : "subPropertyOf", @@ -3189,14 +3189,14 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000050", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002131" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002431", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002304", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004047" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002431", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002335", "pred" : "subPropertyOf", @@ -3321,14 +3321,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002352", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002328" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002212", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002335" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0004032", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002264" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002212", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002335" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002432", "pred" : "subPropertyOf", @@ -3405,14 +3405,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002630", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002578" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002234", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002353" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002598", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002596" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002234", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002353" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", "pred" : "is_a", @@ -3429,14 +3429,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002254", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002258" - }, { - "sub" : "http://purl.obolibrary.org/obo/GO_0016772", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/GO_0016740" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002352", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0000056" + }, { + "sub" : "http://purl.obolibrary.org/obo/GO_0016772", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/GO_0016740" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002523", "pred" : "subPropertyOf", @@ -3489,26 +3489,26 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002023", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002022" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002258", - "pred" : "inverseOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002286" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002305", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0004046" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002258", + "pred" : "inverseOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002286" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002608", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002410" - }, { - "sub" : "http://purl.obolibrary.org/obo/RO_0002432", - "pred" : "subPropertyOf", - "obj" : "http://purl.obolibrary.org/obo/RO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002017", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002018" + }, { + "sub" : "http://purl.obolibrary.org/obo/RO_0002432", + "pred" : "subPropertyOf", + "obj" : "http://purl.obolibrary.org/obo/RO_0002328" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002388", "pred" : "subPropertyOf", @@ -3637,14 +3637,14 @@ "sub" : "http://purl.obolibrary.org/obo/RO_0002086", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002222" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000015", - "pred" : "is_a", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" }, { "sub" : "http://purl.obolibrary.org/obo/RO_0002012", "pred" : "subPropertyOf", "obj" : "http://purl.obolibrary.org/obo/RO_0002418" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000015", + "pred" : "is_a", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000062", "pred" : "subPropertyOf", @@ -3659,7 +3659,7 @@ "subsets" : [ ], "xrefs" : [ ], "basicPropertyValues" : [ ], - "version" : "http://purl.obolibrary.org/obo/fbdv/releases/2019-11-11/imports/ro_import.owl" + "version" : "http://purl.obolibrary.org/obo/fbdv/releases/2019-11-26/imports/ro_import.owl" }, "equivalentNodesSets" : [ ], "logicalDefinitionAxioms" : [ ], @@ -3702,17 +3702,13 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000050", "allValuesFromEdges" : [ { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000019" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000017", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000017" }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", + "sub" : "http://purl.obolibrary.org/obo/BFO_0000019", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" + "obj" : "http://purl.obolibrary.org/obo/BFO_0000019" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000002", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", @@ -3721,14 +3717,18 @@ "sub" : "http://purl.obolibrary.org/obo/BFO_0000031", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000031" - }, { - "sub" : "http://purl.obolibrary.org/obo/BFO_0000017", - "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", - "obj" : "http://purl.obolibrary.org/obo/BFO_0000017" }, { "sub" : "http://purl.obolibrary.org/obo/BFO_0000020", "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", "obj" : "http://purl.obolibrary.org/obo/BFO_0000020" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000003", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000003" + }, { + "sub" : "http://purl.obolibrary.org/obo/BFO_0000004", + "pred" : "http://purl.obolibrary.org/obo/BFO_0000050", + "obj" : "http://purl.obolibrary.org/obo/BFO_0000004" } ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002506", @@ -3808,12 +3808,12 @@ }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0002086", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002093", "http://purl.obolibrary.org/obo/BFO_0000062" ] - }, { - "predicateId" : "http://purl.obolibrary.org/obo/RO_0002329", - "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/RO_0002215" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/BFO_0000066", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000066", "http://purl.obolibrary.org/obo/BFO_0000050" ] + }, { + "predicateId" : "http://purl.obolibrary.org/obo/RO_0002329", + "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/BFO_0000050", "http://purl.obolibrary.org/obo/RO_0002215" ] }, { "predicateId" : "http://purl.obolibrary.org/obo/RO_0004035", "chainPredicateIds" : [ "http://purl.obolibrary.org/obo/RO_0002327", "http://purl.obolibrary.org/obo/RO_0002305" ] diff --git a/src/ontology/imports/ro_import.obo b/src/ontology/imports/ro_import.obo index 1bf9475..5ae86cd 100644 --- a/src/ontology/imports/ro_import.obo +++ b/src/ontology/imports/ro_import.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: fbdv/releases/2019-11-11/imports/ro_import.owl +data-version: fbdv/releases/2019-11-26/imports/ro_import.owl subsetdef: ro-eco "" subsetdef: RO:0002259 "" ontology: fbdv/imports/ro_import diff --git a/src/ontology/imports/ro_import.owl b/src/ontology/imports/ro_import.owl index 33daf85..6887015 100644 --- a/src/ontology/imports/ro_import.owl +++ b/src/ontology/imports/ro_import.owl @@ -17,7 +17,7 @@ xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + @@ -266,6 +266,12 @@ Where we have an annotation assertion + + + + + + diff --git a/src/ontology/merged-fbdv-edit-release.owl b/src/ontology/merged-fbdv-edit-release.owl index d0eb526..ccfa8fc 100644 --- a/src/ontology/merged-fbdv-edit-release.owl +++ b/src/ontology/merged-fbdv-edit-release.owl @@ -1,6 +1,7 @@ + http://orcid.org/0000-0002-1373-1705 + http://orcid.org/0000-0002-7073-9172 + https://orcid.org/0000-0001-5948-3092 + https://orcid.org/0000-0002-0027-0858 + An ontology of Drosophila melanogaster developmental stages. + FlyBase Developmental Ontology (FBdv) + https://creativecommons.org/licenses/by/3.0/ * FBdv:$sequence(8,7000,10000)$ FlyBase_development_CV 1.2 - Drosophila temporal ontology. @@ -179,6 +187,24 @@ + + + + + + + + + + + + + + + + + + diff --git a/src/ontology/ontologyterms.txt b/src/ontology/ontologyterms.txt index 103988e..c298ad1 100644 --- a/src/ontology/ontologyterms.txt +++ b/src/ontology/ontologyterms.txt @@ -1,204 +1,204 @@ term -http://purl.obolibrary.org/obo/FBdv_00007004 +http://purl.obolibrary.org/obo/FBdv_00005289 +http://purl.obolibrary.org/obo/FBdv_00018001 +http://purl.obolibrary.org/obo/FBdv_00007012 http://purl.obolibrary.org/obo/FBdv_00005259 http://purl.obolibrary.org/obo/FBdv_00005323 http://purl.obolibrary.org/obo/FBdv_00014201 -http://purl.obolibrary.org/obo/FBdv_00018001 -http://purl.obolibrary.org/obo/FBdv_00005357 +http://purl.obolibrary.org/obo/FBdv_00005366 +http://purl.obolibrary.org/obo/FBdv_00007127 http://purl.obolibrary.org/obo/FBdv_00007014 http://purl.obolibrary.org/obo/FBdv_00007093 http://purl.obolibrary.org/obo/FBdv_00005369 http://purl.obolibrary.org/obo/FBdv_00007013 -http://purl.obolibrary.org/obo/FBdv_00005274 -http://purl.obolibrary.org/obo/FBdv_00005332 +http://purl.obolibrary.org/obo/FBdv_00007025 http://purl.obolibrary.org/obo/FBdv_00007001 http://purl.obolibrary.org/obo/FBdv_00006011 -http://purl.obolibrary.org/obo/FBdv_00007025 http://purl.obolibrary.org/obo/FBdv_00005368 -http://purl.obolibrary.org/obo/FBdv_00004450 -http://purl.obolibrary.org/obo/FBdv_00005283 +http://purl.obolibrary.org/obo/FBdv_00005352 http://purl.obolibrary.org/obo/FBdv_00005335 http://purl.obolibrary.org/obo/FBdv_00007015 +http://purl.obolibrary.org/obo/FBdv_00005371 +http://purl.obolibrary.org/obo/FBdv_00007007 +http://purl.obolibrary.org/obo/FBdv_00005370 +http://purl.obolibrary.org/obo/FBdv_00007095 +http://purl.obolibrary.org/obo/FBdv_00007099 +http://purl.obolibrary.org/obo/FBdv_00005278 +http://purl.obolibrary.org/obo/FBdv_00005288 http://purl.obolibrary.org/obo/FBdv_00005333 -http://purl.obolibrary.org/obo/FBdv_00007108 -http://purl.obolibrary.org/obo/FBdv_00005365 -http://purl.obolibrary.org/obo/FBdv_00007119 -http://purl.obolibrary.org/obo/FBdv_00007132 http://purl.obolibrary.org/obo/FBdv_00005267 http://purl.obolibrary.org/obo/FBdv_00004886 -http://purl.obolibrary.org/obo/FBdv_00005351 -http://purl.obolibrary.org/obo/FBdv_00007123 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-http://purl.obolibrary.org/obo/FBdv_00005366 +http://purl.obolibrary.org/obo/FBdv_00005298 +http://purl.obolibrary.org/obo/FBdv_00007125 +http://purl.obolibrary.org/obo/FBdv_00007119 http://purl.obolibrary.org/obo/FBdv_00007130 -http://purl.obolibrary.org/obo/FBdv_00007009 -http://purl.obolibrary.org/obo/FBdv_00005341 -http://purl.obolibrary.org/obo/FBdv_00005289 http://purl.obolibrary.org/obo/FBdv_00007018 -http://purl.obolibrary.org/obo/FBdv_00005345 -http://purl.obolibrary.org/obo/FBdv_00005291 -http://purl.obolibrary.org/obo/FBdv_00005302 -http://purl.obolibrary.org/obo/FBdv_00005339 -http://purl.obolibrary.org/obo/FBdv_00005346 -http://purl.obolibrary.org/obo/FBdv_00005348 +http://purl.obolibrary.org/obo/FBdv_00005336 +http://purl.obolibrary.org/obo/FBdv_00007134 http://purl.obolibrary.org/obo/FBdv_00005350 -http://purl.obolibrary.org/obo/FBdv_00005353 -http://purl.obolibrary.org/obo/FBdv_00007114 -http://purl.obolibrary.org/obo/FBdv_00005288 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-http://purl.obolibrary.org/obo/FBdv_00007085 -http://purl.obolibrary.org/obo/FBdv_00005355 +http://purl.obolibrary.org/obo/FBdv_00007115 +http://purl.obolibrary.org/obo/FBdv_00007002 +http://purl.obolibrary.org/obo/FBdv_00005364 +http://purl.obolibrary.org/obo/FBdv_00007114 +http://purl.obolibrary.org/obo/FBdv_00007103 +http://purl.obolibrary.org/obo/FBdv_00007104 +http://purl.obolibrary.org/obo/FBdv_00007133 +http://purl.obolibrary.org/obo/FBdv_00007123 +http://purl.obolibrary.org/obo/FBdv_00005307 +http://purl.obolibrary.org/obo/FBdv_00005287 +http://purl.obolibrary.org/obo/FBdv_00007108 +http://purl.obolibrary.org/obo/FBdv_00007112 +http://purl.obolibrary.org/obo/FBdv_00007091 +http://purl.obolibrary.org/obo/FBdv_00005356 +http://purl.obolibrary.org/obo/FBdv_00005263 http://purl.obolibrary.org/obo/FBdv_00007094 -http://purl.obolibrary.org/obo/FBdv_00005337 -http://purl.obolibrary.org/obo/FBdv_00007117 +http://purl.obolibrary.org/obo/FBdv_00005318 http://purl.obolibrary.org/obo/FBdv_00007101 -http://purl.obolibrary.org/obo/FBdv_00007077 -http://purl.obolibrary.org/obo/FBdv_00007003 -http://purl.obolibrary.org/obo/FBdv_00005307 -http://purl.obolibrary.org/obo/FBdv_00005309 +http://purl.obolibrary.org/obo/FBdv_00005302 +http://purl.obolibrary.org/obo/FBdv_00007083 +http://purl.obolibrary.org/obo/FBdv_00007122 +http://purl.obolibrary.org/obo/FBdv_00005265 +http://purl.obolibrary.org/obo/FBdv_00007006 +http://purl.obolibrary.org/obo/FBdv_00005355 +http://purl.obolibrary.org/obo/FBdv_00005328 http://purl.obolibrary.org/obo/FBdv_00005305 http://purl.obolibrary.org/obo/FBdv_00005326 http://purl.obolibrary.org/obo/FBdv_00007000 diff --git a/src/ontology/reports/fbdv-edit-release.owl-obo-report.tsv b/src/ontology/reports/fbdv-edit-release.owl-obo-report.tsv index e8ab5b2..c426d08 100644 --- a/src/ontology/reports/fbdv-edit-release.owl-obo-report.tsv +++ b/src/ontology/reports/fbdv-edit-release.owl-obo-report.tsv @@ -1,7 +1,4 @@ Level Rule Name Subject Property Value -ERROR missing_ontology_description fbdv.owl dc11:description -ERROR missing_ontology_license fbdv.owl dc:license -ERROR missing_ontology_title fbdv.owl dc11:title WARN missing_definition BFO:0000051 IAO:0000115 WARN missing_definition BFO:0000062 IAO:0000115 WARN missing_definition FBdv:00004886 IAO:0000115 diff --git a/src/ontology/reports/robot_simple_diff.txt b/src/ontology/reports/robot_simple_diff.txt index 72670dd..2055e1f 100644 --- a/src/ontology/reports/robot_simple_diff.txt +++ b/src/ontology/reports/robot_simple_diff.txt @@ -1,9 +1,15 @@ -3 axioms in Ontology 1 but not in Ontology 2: -- Annotation( "11:11:2019 10:21"^^xsd:string) -- AnnotationAssertion(rdfs:label "substage_of"^^xsd:string) -- OntologyID(OntologyIRI() VersionIRI()) +9 axioms in Ontology 1 but not in Ontology 2: +- Annotation( "http://orcid.org/0000-0002-1373-1705"^^xsd:string) +- Annotation( "http://orcid.org/0000-0002-7073-9172"^^xsd:string) +- Annotation( "https://orcid.org/0000-0001-5948-3092"^^xsd:string) +- Annotation( "https://orcid.org/0000-0002-0027-0858"^^xsd:string) +- Annotation( "An ontology of Drosophila melanogaster developmental stages."^^xsd:string) +- Annotation( "FlyBase Developmental Ontology (FBdv)"^^xsd:string) +- Annotation( "https://creativecommons.org/licenses/by/3.0/"^^xsd:string) +- Annotation( "26:11:2019 08:43"^^xsd:string) +- OntologyID(OntologyIRI() VersionIRI()) 3 axioms in Ontology 2 but not in Ontology 1: -+ Annotation( "21:10:2019 12:48"^^xsd:string) -+ AnnotationAssertion(rdfs:label "substage of"^^xsd:string) -+ OntologyID(OntologyIRI() VersionIRI()) ++ Annotation( "11:11:2019 10:21"^^xsd:string) ++ Annotation(rdfs:comment "Drosophila temporal ontology."^^xsd:string) ++ OntologyID(OntologyIRI() VersionIRI())