build json files and md-cache #822
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| name: build json files and md-cache | |
| on: | |
| schedule: # every day at 2am and 2pm | |
| - cron: '0 2,14 * * *' | |
| workflow_dispatch: | |
| repository_dispatch: | |
| types: [update-website] | |
| jobs: | |
| build-component-json: | |
| runs-on: ubuntu-latest | |
| environment: static-file-build | |
| if: (github.event_name == 'schedule' && github.repository == 'nf-core/website') || (github.event_name != 'schedule') | |
| steps: | |
| # Set up the main website repo | |
| - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4 | |
| with: | |
| fetch-depth: 0 # Don't do a shallow clone | |
| token: ${{secrets.NF_CORE_BOT_AUTH_TOKEN}} # Needed for pushing back to the repo | |
| # install npm dependencies | |
| - name: Set up node.js | |
| uses: actions/setup-node@0a44ba7841725637a19e28fa30b79a866c81b0a6 # v4 | |
| with: | |
| node-version: 20 | |
| cache: 'npm' | |
| - name: Install dependencies | |
| run: npm ci | |
| - name: create pipeline.json | |
| run: npm run build-pipeline-json | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.PIPLINE_JSON_BUILD_TOKEN }} | |
| - name: create component.json | |
| run: npm run build-component-json | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.PIPLINE_JSON_BUILD_TOKEN }} | |
| - name: make md cache | |
| run: npm run build-md-cache | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.CREATE_CACHE_MD_TOKEN }} | |
| # check lines if too many lines of code have been changed in /public/pipelines.json and /pulic/components.json | |
| # also check if .cache.tar.xz is smaller than before (shouldn't happen) | |
| - name: check lines | |
| run: | | |
| diff_output=$(git diff --shortstat public/pipelines.json public/components.json) | |
| lines_added=$(echo $diff_output | awk '{print $4}') | |
| lines_removed=$(echo $diff_output | awk '{print $6}') | |
| changes=$((lines_added - lines_removed)) | |
| if (($changes < -100)) || (($changes > 100)); then | |
| file_size_before=$(echo $diff_output | awk '{print $4}') | |
| file_size_after=$(echo $diff_output | awk '{print $6}') | |
| changes=true | |
| fi | |
| if [ ! $changes ]; then | |
| diff_output=$(git diff --stat .cache.tar.xz) | |
| file_size_before=$(echo $diff_output | awk '{print $4}') | |
| file_size_after=$(echo $diff_output | awk '{print $6}') | |
| changes_tmp=$((file_size_before - file_size_after)) | |
| if ((changes_tmp > 0)); then | |
| changes=true | |
| else | |
| changes=false | |
| fi | |
| fi | |
| echo "changes=$changes" >> "$GITHUB_OUTPUT" | |
| # Commit and push the changes if there are not too many lines changed | |
| - name: Commit and push changes | |
| if: ${{ !steps.check_lines.outputs.changes }} | |
| run: | | |
| git config user.email "core@nf-co.re" | |
| git config user.name "nf-core-bot" | |
| git config push.default upstream | |
| git status | |
| git diff --quiet || (git commit -am "[automated] Update json files and markdown cache" && git push) | |
| # Create a PR if there are too many lines changed | |
| - name: Create PR with changes | |
| if: ${{ steps.check_lines.outputs.changes }} | |
| uses: peter-evans/create-pull-request@c5a7806660adbe173f04e3e038b0ccdcd758773c # v6 | |
| with: | |
| token: ${{ secrets.CREATE_PR_TOKEN }} | |
| commit-message: 'chore: update pipeline.json and component.json' | |
| title: 'chore: update pipeline.json and component.json' | |
| body: 'This PR was automatically created by a GitHub Action because there were too many lines changed in the pipeline.json and component.json files.' | |
| branch: 'chore/update-pipeline-json-and-component-json' | |
| delete-branch: true | |
| draft: false |