iSynCJ816_STAR

An Enzyme Constrained Version of the iSynCJ816 model.

This is an upgraded version of the Synechocystis 6803 stoichiometric metabolic model iSynCj816 (10.1016/j.algal.2017.09.013). The AUTOPACKMEN pipeline was used (10.1186/s12859-019-3329-9).

Finished models:

iSynCJ816_STAR.json iSynCJ816_STAR.xml iSynCJ816_STAR.mat

Finished model with pseudo-metabolites removed:

iSynCJ816_STAR_no_Pusedometabolite_Coefficients.xml

Base stoichiometric model (iSynCJ816) with heterologous pathways:

iSynCJ816_STOICHIOMETRIC_for_AUTOPACKMEN.xml

kcat values used for construction

kcats used kcat_database_combined kcat_database_brenda kcat_database_brenda_for_model kcat_database_sabio_rk

Molecular weights of enzymes

Finished_ID_MASS_MAPPING_2

Code used in construction and simulation

Creating Stoichiometric XML_Github sMOMENT_construction_Github