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Merge pull request #200 from GEOS-ESM/feature/vbuchard/update_path_em…
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Feature/vbuchard/update path emissions
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@amdasilva
amdasilva authored Jan 24, 2023
2 parents 464056a + 080116f commit 5d0aa32
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8 changes: 6 additions & 2 deletions CHANGELOG.md
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Expand Up @@ -8,15 +8,15 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
## [Unreleased]

### Added
Changes were made so GOCART2G and its children can be run with component level

- Changes were made so GOCART2G and its children can be run with component level
OpenMP threading. The key change is to create the data structure ThreadWorkspace
to hold variables that should be private to each thread to avoid race conditions.
Additionally spatially distributed arrays that are not in any of the ESMF states
were added to the ESMF internal state so they could be properly handled when
the 'mini' ESMF sates are created. Those arrays are xhno3 for NI2G, h202_init
for SU2G, and deep_lakes_mask for SS2G. All of these arrays have MAPL_RestartSkip
option so they are not written to restart.

- Aerosol single scattering backscatter coefficient for each instances and total at wavelengths_profile
- Total (molecular + aerosols) attenuated backscatter coefficient from TOA and sfc at 532nm

Expand All @@ -25,6 +25,9 @@ option so they are not written to restart.
### Changed

- Moved to use GitHub Action for label enforcement
- For OPS configuration: removal of links, change of QFED paths from vNRT/ to v2.5r1-nrt/ (note after November 2021, files are v2.6r1)
- For AMIP configuration: update of QFED from v2.5r1 to v2.6r1
- Update of climatological paths from MERRAero to MERRA-2
- Updated CircleCI image to use Baselibs 7.7.0
- Update `components.yaml` to reflect GEOSgcm

Expand All @@ -39,6 +42,7 @@ option so they are not written to restart.

### Changed


## [2.1.1] - 2022-09-16

### Fixed
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32 changes: 16 additions & 16 deletions ESMF/GOCART2G_GridComp/CA2G_GridComp/AMIP.20C/CA2G_GridComp_ExtData.rc
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Expand Up @@ -6,30 +6,30 @@ PrimaryExports%%

#========== Data Instance ==========================================================

climBCphobic 'kg kg-1' Y N 0 0.0 1.0 BCphobic ExtData/chemistry/MERRAero/v0.0.0/L72/dR_MERRA-AA-r2.aer_Nv.2003_2014.2008clm.nc4
climBCphilic 'kg kg-1' Y N 0 0.0 1.0 BCphilic ExtData/chemistry/MERRAero/v0.0.0/L72/dR_MERRA-AA-r2.aer_Nv.2003_2014.2008clm.nc4
climOCphobic 'kg kg-1' Y N 0 0.0 1.0 OCphobic ExtData/chemistry/MERRAero/v0.0.0/L72/dR_MERRA-AA-r2.aer_Nv.2003_2014.2008clm.nc4
climOCphilic 'kg kg-1' Y N 0 0.0 1.0 OCphilic ExtData/chemistry/MERRAero/v0.0.0/L72/dR_MERRA-AA-r2.aer_Nv.2003_2014.2008clm.nc4
climBCphobic 'kg kg-1' Y N 0 0.0 1.0 BCphobic ExtData/chemistry/MERRA2/v0.0.0/L72/merra2.aer_Nv.2003-2015.2008%m2clm.nc4
climBCphilic 'kg kg-1' Y N 0 0.0 1.0 BCphilic ExtData/chemistry/MERRA2/v0.0.0/L72/merra2.aer_Nv.2003-2015.2008%m2clm.nc4
climOCphobic 'kg kg-1' Y N 0 0.0 1.0 OCphobic ExtData/chemistry/MERRA2/v0.0.0/L72/merra2.aer_Nv.2003-2015.2008%m2clm.nc4
climOCphilic 'kg kg-1' Y N 0 0.0 1.0 OCphilic ExtData/chemistry/MERRA2/v0.0.0/L72/merra2.aer_Nv.2003-2015.2008%m2clm.nc4

climBCDP001 'kg m-2 s-1' Y N 0 0.0 1.0 BCDP001 ExtData/chemistry/MERRAero/v0.0.0/sfc/dR_MERRA-AA-r2.aer_Nx.2003_2014.2008clm.nc4
climBCWT001 'kg m-2 s-1' Y N 0 0.0 1.0 BCWT001 ExtData/chemistry/MERRAero/v0.0.0/sfc/dR_MERRA-AA-r2.aer_Nx.2003_2014.2008clm.nc4
climBCDP001 'kg m-2 s-1' Y N 0 0.0 1.0 BCDP001 ExtData/chemistry/MERRA2/v0.0.0/sfc/merra2.aer_Nx.2003-2015.2008%m2clm.nc4
climBCWT001 'kg m-2 s-1' Y N 0 0.0 1.0 BCWT001 ExtData/chemistry/MERRA2/v0.0.0/sfc/merra2.aer_Nx.2003-2015.2008%m2clm.nc4
climBCSD001 'kg m-2 s-1' Y N 0 0.0 1.0 BCSD001 /dev/null
climBCSV001 'kg m-2 s-1' Y N 0 0.0 1.0 BCSV001 ExtData/chemistry/MERRAero/v0.0.0/sfc/dR_MERRA-AA-r2.aer_Nx.2003_2014.2008clm.nc4
climBCSV001 'kg m-2 s-1' Y N 0 0.0 1.0 BCSV001 ExtData/chemistry/MERRA2/v0.0.0/sfc/merra2.aer_Nx.2003-2015.2008%m2clm.nc4

climBCDP002 'kg m-2 s-1' Y N 0 0.0 1.0 BCDP002 ExtData/chemistry/MERRAero/v0.0.0/sfc/dR_MERRA-AA-r2.aer_Nx.2003_2014.2008clm.nc4
climBCWT002 'kg m-2 s-1' Y N 0 0.0 1.0 BCWT002 ExtData/chemistry/MERRAero/v0.0.0/sfc/dR_MERRA-AA-r2.aer_Nx.2003_2014.2008clm.nc4
climBCDP002 'kg m-2 s-1' Y N 0 0.0 1.0 BCDP002 ExtData/chemistry/MERRA2/v0.0.0/sfc/merra2.aer_Nx.2003-2015.2008%m2clm.nc4
climBCWT002 'kg m-2 s-1' Y N 0 0.0 1.0 BCWT002 ExtData/chemistry/MERRA2/v0.0.0/sfc/merra2.aer_Nx.2003-2015.2008%m2clm.nc4
climBCSD002 'kg m-2 s-1' Y N 0 0.0 1.0 BCSD002 /dev/null
climBCSV002 'kg m-2 s-1' Y N 0 0.0 1.0 BCSV002 ExtData/chemistry/MERRAero/v0.0.0/sfc/dR_MERRA-AA-r2.aer_Nx.2003_2014.2008clm.nc4
climBCSV002 'kg m-2 s-1' Y N 0 0.0 1.0 BCSV002 ExtData/chemistry/MERRA2/v0.0.0/sfc/merra2.aer_Nx.2003-2015.2008%m2clm.nc4

climOCDP001 'kg m-2 s-1' Y N 0 0.0 1.0 OCDP001 ExtData/chemistry/MERRAero/v0.0.0/sfc/dR_MERRA-AA-r2.aer_Nx.2003_2014.2008clm.nc4
climOCWT001 'kg m-2 s-1' Y N 0 0.0 1.0 OCWT001 ExtData/chemistry/MERRAero/v0.0.0/sfc/dR_MERRA-AA-r2.aer_Nx.2003_2014.2008clm.nc4
climOCDP001 'kg m-2 s-1' Y N 0 0.0 1.0 OCDP001 ExtData/chemistry/MERRA2/v0.0.0/sfc/merra2.aer_Nx.2003-2015.2008%m2clm.nc4
climOCWT001 'kg m-2 s-1' Y N 0 0.0 1.0 OCWT001 ExtData/chemistry/MERRA2/v0.0.0/sfc/merra2.aer_Nx.2003-2015.2008%m2clm.nc4
climOCSD001 'kg m-2 s-1' Y N 0 0.0 1.0 OCSD001 /dev/null
climOCSV001 'kg m-2 s-1' Y N 0 0.0 1.0 OCSV001 ExtData/chemistry/MERRAero/v0.0.0/sfc/dR_MERRA-AA-r2.aer_Nx.2003_2014.2008clm.nc4
climOCSV001 'kg m-2 s-1' Y N 0 0.0 1.0 OCSV001 ExtData/chemistry/MERRA2/v0.0.0/sfc/merra2.aer_Nx.2003-2015.2008%m2clm.nc4

climOCDP002 'kg m-2 s-1' Y N 0 0.0 1.0 OCDP002 ExtData/chemistry/MERRAero/v0.0.0/sfc/dR_MERRA-AA-r2.aer_Nx.2003_2014.2008clm.nc4
climOCWT002 'kg m-2 s-1' Y N 0 0.0 1.0 OCWT002 ExtData/chemistry/MERRAero/v0.0.0/sfc/dR_MERRA-AA-r2.aer_Nx.2003_2014.2008clm.nc4
climOCDP002 'kg m-2 s-1' Y N 0 0.0 1.0 OCDP002 ExtData/chemistry/MERRA2/v0.0.0/sfc/merra2.aer_Nx.2003-2015.2008%m2clm.nc4
climOCWT002 'kg m-2 s-1' Y N 0 0.0 1.0 OCWT002 ExtData/chemistry/MERRA2/v0.0.0/sfc/merra2.aer_Nx.2003-2015.2008%m2clm.nc4
climOCSD002 'kg m-2 s-1' Y N 0 0.0 1.0 OCSD002 /dev/null
climOCSV002 'kg m-2 s-1' Y N 0 0.0 1.0 OCSV002 ExtData/chemistry/MERRAero/v0.0.0/sfc/dR_MERRA-AA-r2.aer_Nx.2003_2014.2008clm.nc4
climOCSV002 'kg m-2 s-1' Y N 0 0.0 1.0 OCSV002 ExtData/chemistry/MERRA2/v0.0.0/sfc/merra2.aer_Nx.2003-2015.2008%m2clm.nc4


#=========== Carbonaceous aerosol sources ===========================================
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36 changes: 18 additions & 18 deletions ESMF/GOCART2G_GridComp/CA2G_GridComp/AMIP/CA2G_GridComp_ExtData.rc
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Expand Up @@ -6,30 +6,30 @@ PrimaryExports%%

#========== Data Instance ==========================================================

climBCphobic 'kg kg-1' Y N 0 0.0 1.0 BCphobic ExtData/chemistry/MERRAero/v0.0.0/L72/dR_MERRA-AA-r2.aer_Nv.2003_2014.2008clm.nc4
climBCphilic 'kg kg-1' Y N 0 0.0 1.0 BCphilic ExtData/chemistry/MERRAero/v0.0.0/L72/dR_MERRA-AA-r2.aer_Nv.2003_2014.2008clm.nc4
climOCphobic 'kg kg-1' Y N 0 0.0 1.0 OCphobic ExtData/chemistry/MERRAero/v0.0.0/L72/dR_MERRA-AA-r2.aer_Nv.2003_2014.2008clm.nc4
climOCphilic 'kg kg-1' Y N 0 0.0 1.0 OCphilic ExtData/chemistry/MERRAero/v0.0.0/L72/dR_MERRA-AA-r2.aer_Nv.2003_2014.2008clm.nc4
climBCphobic 'kg kg-1' Y N 0 0.0 1.0 BCphobic ExtData/chemistry/MERRA2/v0.0.0/L72/merra2.aer_Nv.2003-2015.2008%m2clm.nc4
climBCphilic 'kg kg-1' Y N 0 0.0 1.0 BCphilic ExtData/chemistry/MERRA2/v0.0.0/L72/merra2.aer_Nv.2003-2015.2008%m2clm.nc4
climOCphobic 'kg kg-1' Y N 0 0.0 1.0 OCphobic ExtData/chemistry/MERRA2/v0.0.0/L72/merra2.aer_Nv.2003-2015.2008%m2clm.nc4
climOCphilic 'kg kg-1' Y N 0 0.0 1.0 OCphilic ExtData/chemistry/MERRA2/v0.0.0/L72/merra2.aer_Nv.2003-2015.2008%m2clm.nc4

climBCDP001 'kg m-2 s-1' Y N 0 0.0 1.0 BCDP001 ExtData/chemistry/MERRAero/v0.0.0/sfc/dR_MERRA-AA-r2.aer_Nx.2003_2014.2008clm.nc4
climBCWT001 'kg m-2 s-1' Y N 0 0.0 1.0 BCWT001 ExtData/chemistry/MERRAero/v0.0.0/sfc/dR_MERRA-AA-r2.aer_Nx.2003_2014.2008clm.nc4
climBCDP001 'kg m-2 s-1' Y N 0 0.0 1.0 BCDP001 ExtData/chemistry/MERRA2/v0.0.0/sfc/merra2.aer_Nx.2003-2015.2008%m2clm.nc4
climBCWT001 'kg m-2 s-1' Y N 0 0.0 1.0 BCWT001 ExtData/chemistry/MERRA2/v0.0.0/sfc/merra2.aer_Nx.2003-2015.2008%m2clm.nc4
climBCSD001 'kg m-2 s-1' Y N 0 0.0 1.0 BCSD001 /dev/null
climBCSV001 'kg m-2 s-1' Y N 0 0.0 1.0 BCSV001 ExtData/chemistry/MERRAero/v0.0.0/sfc/dR_MERRA-AA-r2.aer_Nx.2003_2014.2008clm.nc4
climBCSV001 'kg m-2 s-1' Y N 0 0.0 1.0 BCSV001 ExtData/chemistry/MERRA2/v0.0.0/sfc/merra2.aer_Nx.2003-2015.2008%m2clm.nc4

climBCDP002 'kg m-2 s-1' Y N 0 0.0 1.0 BCDP002 ExtData/chemistry/MERRAero/v0.0.0/sfc/dR_MERRA-AA-r2.aer_Nx.2003_2014.2008clm.nc4
climBCWT002 'kg m-2 s-1' Y N 0 0.0 1.0 BCWT002 ExtData/chemistry/MERRAero/v0.0.0/sfc/dR_MERRA-AA-r2.aer_Nx.2003_2014.2008clm.nc4
climBCDP002 'kg m-2 s-1' Y N 0 0.0 1.0 BCDP002 ExtData/chemistry/MERRA2/v0.0.0/sfc/merra2.aer_Nx.2003-2015.2008%m2clm.nc4
climBCWT002 'kg m-2 s-1' Y N 0 0.0 1.0 BCWT002 ExtData/chemistry/MERRA2/v0.0.0/sfc/merra2.aer_Nx.2003-2015.2008%m2clm.nc4
climBCSD002 'kg m-2 s-1' Y N 0 0.0 1.0 BCSD002 /dev/null
climBCSV002 'kg m-2 s-1' Y N 0 0.0 1.0 BCSV002 ExtData/chemistry/MERRAero/v0.0.0/sfc/dR_MERRA-AA-r2.aer_Nx.2003_2014.2008clm.nc4
climBCSV002 'kg m-2 s-1' Y N 0 0.0 1.0 BCSV002 ExtData/chemistry/MERRA2/v0.0.0/sfc/merra2.aer_Nx.2003-2015.2008%m2clm.nc4

climOCDP001 'kg m-2 s-1' Y N 0 0.0 1.0 OCDP001 ExtData/chemistry/MERRAero/v0.0.0/sfc/dR_MERRA-AA-r2.aer_Nx.2003_2014.2008clm.nc4
climOCWT001 'kg m-2 s-1' Y N 0 0.0 1.0 OCWT001 ExtData/chemistry/MERRAero/v0.0.0/sfc/dR_MERRA-AA-r2.aer_Nx.2003_2014.2008clm.nc4
climOCDP001 'kg m-2 s-1' Y N 0 0.0 1.0 OCDP001 ExtData/chemistry/MERRA2/v0.0.0/sfc/merra2.aer_Nx.2003-2015.2008%m2clm.nc4
climOCWT001 'kg m-2 s-1' Y N 0 0.0 1.0 OCWT001 ExtData/chemistry/MERRA2/v0.0.0/sfc/merra2.aer_Nx.2003-2015.2008%m2clm.nc4
climOCSD001 'kg m-2 s-1' Y N 0 0.0 1.0 OCSD001 /dev/null
climOCSV001 'kg m-2 s-1' Y N 0 0.0 1.0 OCSV001 ExtData/chemistry/MERRAero/v0.0.0/sfc/dR_MERRA-AA-r2.aer_Nx.2003_2014.2008clm.nc4
climOCSV001 'kg m-2 s-1' Y N 0 0.0 1.0 OCSV001 ExtData/chemistry/MERRA2/v0.0.0/sfc/merra2.aer_Nx.2003-2015.2008%m2clm.nc4

climOCDP002 'kg m-2 s-1' Y N 0 0.0 1.0 OCDP002 ExtData/chemistry/MERRAero/v0.0.0/sfc/dR_MERRA-AA-r2.aer_Nx.2003_2014.2008clm.nc4
climOCWT002 'kg m-2 s-1' Y N 0 0.0 1.0 OCWT002 ExtData/chemistry/MERRAero/v0.0.0/sfc/dR_MERRA-AA-r2.aer_Nx.2003_2014.2008clm.nc4
climOCDP002 'kg m-2 s-1' Y N 0 0.0 1.0 OCDP002 ExtData/chemistry/MERRA2/v0.0.0/sfc/merra2.aer_Nx.2003-2015.2008%m2clm.nc4
climOCWT002 'kg m-2 s-1' Y N 0 0.0 1.0 OCWT002 ExtData/chemistry/MERRA2/v0.0.0/sfc/merra2.aer_Nx.2003-2015.2008%m2clm.nc4
climOCSD002 'kg m-2 s-1' Y N 0 0.0 1.0 OCSD002 /dev/null
climOCSV002 'kg m-2 s-1' Y N 0 0.0 1.0 OCSV002 ExtData/chemistry/MERRAero/v0.0.0/sfc/dR_MERRA-AA-r2.aer_Nx.2003_2014.2008clm.nc4
climOCSV002 'kg m-2 s-1' Y N 0 0.0 1.0 OCSV002 ExtData/chemistry/MERRA2/v0.0.0/sfc/merra2.aer_Nx.2003-2015.2008%m2clm.nc4


#=========== Carbonaceous aerosol sources ===========================================
Expand Down Expand Up @@ -63,7 +63,7 @@ pSOA_ANTHRO_VOC NA Y Y %y4-%m2-%d2t12:00:00 none none biofuel /dev/null
# BLACK CARBON
# ------------
# QFED v2.x
BC_BIOMASS NA N Y %y4-%m2-%d2t12:00:00 none 0.778 biomass ExtData/chemistry/QFED/v2.5r1/sfc/0.1/Y%y4/M%m2/qfed2.emis_bc.006.%y4%m2%d2.nc4
BC_BIOMASS NA N Y %y4-%m2-%d2t12:00:00 none 0.778 biomass ExtData/chemistry/QFED/v2.6r1/sfc/0.1/Y%y4/M%m2/qfed2.emis_bc.061.%y4%m2%d2.nc4

# Biofuel Source -- Included in AeroCom anthropogenic emissions
BC_BIOFUEL NA Y Y %y4-%m2-%d2t12:00:00 none none biofuel /dev/null
Expand All @@ -87,7 +87,7 @@ BC_AVIATION_CRS NA Y Y %y4-%m2-%d2t12:00:00 none none bc_aviation /dev/null
# BROWN CARBON
# ------------
# Biomass burning -- QFED-v2.x
BRC_BIOMASS NA N Y %y4-%m2-%d2t12:00:00 none 0.778 biomass ExtData/chemistry/QFED/v2.5r1/sfc/0.1/Y%y4/M%m2/qfed2.emis_oc.006.%y4%m2%d2.nc4
BRC_BIOMASS NA N Y %y4-%m2-%d2t12:00:00 none 0.778 biomass ExtData/chemistry/QFED/v2.6r1/sfc/0.1/Y%y4/M%m2/qfed2.emis_oc.061.%y4%m2%d2.nc4

# Terpene emission
BRC_TERPENE NA Y Y %y4-%m2-%d2t12:00:00 none none terpene /dev/null
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