From ee8c2bdc8bd4f1a70b1eefda984f04a2830d9ca0 Mon Sep 17 00:00:00 2001 From: Colin Date: Thu, 9 Nov 2023 16:21:23 +0000 Subject: [PATCH] [update docs] v2.8.0 --- lerna.json | 2 +- packages/app-core/package.json | 4 +- packages/core/package.json | 2 +- packages/embedded-core/package.json | 4 +- packages/product-core/package.json | 4 +- packages/text-indexing/package.json | 2 +- packages/web-core/package.json | 6 +- plugins/alignments/package.json | 2 +- plugins/arc/package.json | 2 +- plugins/authentication/package.json | 2 +- plugins/bed/package.json | 2 +- plugins/breakpoint-split-view/package.json | 2 +- plugins/circular-view/package.json | 2 +- plugins/comparative-adapters/package.json | 2 +- plugins/config/package.json | 2 +- plugins/data-management/package.json | 2 +- plugins/dotplot-view/package.json | 2 +- plugins/gccontent/package.json | 2 +- plugins/gff3/package.json | 2 +- plugins/grid-bookmark/package.json | 2 +- plugins/gtf/package.json | 2 +- plugins/hic/package.json | 2 +- plugins/jobs-management/package.json | 4 +- plugins/legacy-jbrowse/package.json | 2 +- plugins/linear-comparative-view/package.json | 2 +- plugins/linear-genome-view/package.json | 2 +- plugins/lollipop/package.json | 2 +- plugins/menus/package.json | 2 +- plugins/rdf/package.json | 2 +- plugins/sequence/package.json | 2 +- plugins/spreadsheet-view/package.json | 4 +- plugins/sv-inspector/package.json | 2 +- plugins/svg/package.json | 2 +- plugins/text-indexing/package.json | 4 +- plugins/trix/package.json | 2 +- plugins/variants/package.json | 2 +- plugins/wiggle/package.json | 2 +- products/jbrowse-cli/README.md | 22 +++--- products/jbrowse-cli/package.json | 2 +- products/jbrowse-desktop/package.json | 70 +++++++++---------- products/jbrowse-img/package.json | 6 +- .../jbrowse-predefined-sessions/package.json | 2 +- products/jbrowse-react-app/package.json | 66 ++++++++--------- .../package.json | 24 +++---- .../package.json | 38 +++++----- products/jbrowse-web/package.json | 66 ++++++++--------- 46 files changed, 193 insertions(+), 193 deletions(-) diff --git a/lerna.json b/lerna.json index 8dd93d0743..4c9d35d01c 100644 --- a/lerna.json +++ b/lerna.json @@ -1,5 +1,5 @@ { - "version": "2.7.2", + "version": "2.8.0", "npmClient": "yarn", "$schema": "node_modules/lerna/schemas/lerna-schema.json" } diff --git a/packages/app-core/package.json b/packages/app-core/package.json index 8748efef7a..15eed22640 100644 --- a/packages/app-core/package.json +++ b/packages/app-core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/app-core", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 code shared between the 'full featured' apps e.g. jbrowse-web and jbrowse-desktop", "keywords": [ "jbrowse", @@ -42,7 +42,7 @@ }, "dependencies": { "@babel/runtime": "^7.16.3", - "@jbrowse/product-core": "^2.7.2", + "@jbrowse/product-core": "^2.8.0", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "clsx": "^2.0.0", diff --git a/packages/core/package.json b/packages/core/package.json index d6753af2b8..a13e87c745 100644 --- a/packages/core/package.json +++ b/packages/core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/core", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 core libraries used by plugins", "keywords": [ "jbrowse", diff --git a/packages/embedded-core/package.json b/packages/embedded-core/package.json index 4b0c2746e5..d396634ecf 100644 --- a/packages/embedded-core/package.json +++ b/packages/embedded-core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/embedded-core", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 code shared between embedded products", "keywords": [ "jbrowse", @@ -42,7 +42,7 @@ }, "dependencies": { "@babel/runtime": "^7.16.3", - "@jbrowse/product-core": "^2.7.2", + "@jbrowse/product-core": "^2.8.0", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "copy-to-clipboard": "^3.3.1", diff --git a/packages/product-core/package.json b/packages/product-core/package.json index 72f69dc6c8..c72e09aca8 100644 --- a/packages/product-core/package.json +++ b/packages/product-core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/product-core", - "version": "2.7.2", + "version": "2.8.0", "sideEffects": false, "description": "JBrowse 2 code shared between products but not used by plugins", "keywords": [ @@ -43,7 +43,7 @@ }, "dependencies": { "@babel/runtime": "^7.16.3", - "@jbrowse/core": "^2.7.2", + "@jbrowse/core": "^2.8.0", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "copy-to-clipboard": "^3.3.1", diff --git a/packages/text-indexing/package.json b/packages/text-indexing/package.json index 1aaead3b81..a5fa3c0a70 100644 --- a/packages/text-indexing/package.json +++ b/packages/text-indexing/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/text-indexing", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 text indexing for desktop", "keywords": [ "jbrowse", diff --git a/packages/web-core/package.json b/packages/web-core/package.json index 36b2254b0f..1f28c56904 100644 --- a/packages/web-core/package.json +++ b/packages/web-core/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/web-core", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 code shared between web-app type products", "keywords": [ "jbrowse", @@ -42,8 +42,8 @@ }, "dependencies": { "@babel/runtime": "^7.16.3", - "@jbrowse/app-core": "^2.7.2", - "@jbrowse/product-core": "^2.7.2", + "@jbrowse/app-core": "^2.8.0", + "@jbrowse/product-core": "^2.8.0", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "clone": "^2.0.0", diff --git a/plugins/alignments/package.json b/plugins/alignments/package.json index 795c00c88f..1563c850af 100644 --- a/plugins/alignments/package.json +++ b/plugins/alignments/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-alignments", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 alignments adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/arc/package.json b/plugins/arc/package.json index ebd6073d62..6a63376caf 100644 --- a/plugins/arc/package.json +++ b/plugins/arc/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-arc", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 arc adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/authentication/package.json b/plugins/authentication/package.json index c2a70f944f..6f9b2b207a 100644 --- a/plugins/authentication/package.json +++ b/plugins/authentication/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-authentication", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 Authentication", "keywords": [ "jbrowse", diff --git a/plugins/bed/package.json b/plugins/bed/package.json index 3c0167fffa..e1570086be 100644 --- a/plugins/bed/package.json +++ b/plugins/bed/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-bed", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 bed adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/breakpoint-split-view/package.json b/plugins/breakpoint-split-view/package.json index 6b2f36d5d8..80e4afa0ff 100644 --- a/plugins/breakpoint-split-view/package.json +++ b/plugins/breakpoint-split-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-breakpoint-split-view", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 breakpoint detail split view", "keywords": [ "jbrowse", diff --git a/plugins/circular-view/package.json b/plugins/circular-view/package.json index 131dea9c5e..027a31e119 100644 --- a/plugins/circular-view/package.json +++ b/plugins/circular-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-circular-view", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 circular view", "keywords": [ "jbrowse", diff --git a/plugins/comparative-adapters/package.json b/plugins/comparative-adapters/package.json index 63585340ed..ec5dd8b1ac 100644 --- a/plugins/comparative-adapters/package.json +++ b/plugins/comparative-adapters/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-comparative-adapters", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 comparative adapters", "keywords": [ "jbrowse", diff --git a/plugins/config/package.json b/plugins/config/package.json index 45774d2cd8..56b4a0a8a2 100644 --- a/plugins/config/package.json +++ b/plugins/config/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-config", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 config utilities", "keywords": [ "jbrowse", diff --git a/plugins/data-management/package.json b/plugins/data-management/package.json index e01c435628..6c0f3c442f 100644 --- a/plugins/data-management/package.json +++ b/plugins/data-management/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-data-management", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 linear genome view", "keywords": [ "jbrowse", diff --git a/plugins/dotplot-view/package.json b/plugins/dotplot-view/package.json index e91dafb902..abb3446d71 100644 --- a/plugins/dotplot-view/package.json +++ b/plugins/dotplot-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-dotplot-view", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 dotplot view", "keywords": [ "jbrowse", diff --git a/plugins/gccontent/package.json b/plugins/gccontent/package.json index d4d5719e17..13ce7f5a3e 100644 --- a/plugins/gccontent/package.json +++ b/plugins/gccontent/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-gccontent", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 gccontent concepts", "keywords": [ "jbrowse", diff --git a/plugins/gff3/package.json b/plugins/gff3/package.json index fbe7b9e803..d5eee43b57 100644 --- a/plugins/gff3/package.json +++ b/plugins/gff3/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-gff3", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 gff3.", "keywords": [ "jbrowse", diff --git a/plugins/grid-bookmark/package.json b/plugins/grid-bookmark/package.json index 3cbb109826..8e635c8541 100644 --- a/plugins/grid-bookmark/package.json +++ b/plugins/grid-bookmark/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-grid-bookmark", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 grid bookmark widget", "keywords": [ "jbrowse", diff --git a/plugins/gtf/package.json b/plugins/gtf/package.json index 0aaff2836a..9a4262bf8e 100644 --- a/plugins/gtf/package.json +++ b/plugins/gtf/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-gtf", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 gtf feature adapter", "keywords": [ "jbrowse", diff --git a/plugins/hic/package.json b/plugins/hic/package.json index 367b7c3ea5..17a1c8360a 100644 --- a/plugins/hic/package.json +++ b/plugins/hic/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-hic", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 hic adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/jobs-management/package.json b/plugins/jobs-management/package.json index 78c19203e1..bac581265b 100644 --- a/plugins/jobs-management/package.json +++ b/plugins/jobs-management/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-jobs-management", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 jobs management", "keywords": [ "jbrowse", @@ -36,7 +36,7 @@ "clean": "rimraf dist esm *.tsbuildinfo" }, "dependencies": { - "@jbrowse/text-indexing": "^2.7.2", + "@jbrowse/text-indexing": "^2.8.0", "@mui/icons-material": "^5.0.0" }, "peerDependencies": { diff --git a/plugins/legacy-jbrowse/package.json b/plugins/legacy-jbrowse/package.json index 5dba2ec777..593902f7ff 100644 --- a/plugins/legacy-jbrowse/package.json +++ b/plugins/legacy-jbrowse/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-legacy-jbrowse", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 plugin for connecting to and reading JBrowse 1 data", "keywords": [ "jbrowse", diff --git a/plugins/linear-comparative-view/package.json b/plugins/linear-comparative-view/package.json index c383ab49be..65e8133ed5 100644 --- a/plugins/linear-comparative-view/package.json +++ b/plugins/linear-comparative-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-linear-comparative-view", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 linear comparative view", "keywords": [ "jbrowse", diff --git a/plugins/linear-genome-view/package.json b/plugins/linear-genome-view/package.json index 5b663e1a2d..2652c4f08b 100644 --- a/plugins/linear-genome-view/package.json +++ b/plugins/linear-genome-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-linear-genome-view", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 linear genome view", "keywords": [ "jbrowse", diff --git a/plugins/lollipop/package.json b/plugins/lollipop/package.json index be9aba3b1d..08a9562ae3 100644 --- a/plugins/lollipop/package.json +++ b/plugins/lollipop/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-lollipop", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 plugin for lollipops", "keywords": [ "jbrowse", diff --git a/plugins/menus/package.json b/plugins/menus/package.json index 6eb6d62c56..ff5aac8712 100644 --- a/plugins/menus/package.json +++ b/plugins/menus/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-menus", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 basic menus", "keywords": [ "jbrowse", diff --git a/plugins/rdf/package.json b/plugins/rdf/package.json index 9b6d0bbe88..e10cd49e32 100644 --- a/plugins/rdf/package.json +++ b/plugins/rdf/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-rdf", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 RDF resources", "keywords": [ "jbrowse", diff --git a/plugins/sequence/package.json b/plugins/sequence/package.json index c78e9f5318..f5d04b3b5b 100644 --- a/plugins/sequence/package.json +++ b/plugins/sequence/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-sequence", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 sequence adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/spreadsheet-view/package.json b/plugins/spreadsheet-view/package.json index 9bb5ecea60..51ea851e71 100644 --- a/plugins/spreadsheet-view/package.json +++ b/plugins/spreadsheet-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-spreadsheet-view", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 spreadsheet view", "keywords": [ "jbrowse", @@ -38,7 +38,7 @@ "dependencies": { "@gmod/bgzf-filehandle": "^1.4.3", "@gmod/vcf": "^5.0.9", - "@jbrowse/plugin-variants": "^2.7.2", + "@jbrowse/plugin-variants": "^2.8.0", "@mui/icons-material": "^5.0.1", "csvtojson": "^2.0.10" }, diff --git a/plugins/sv-inspector/package.json b/plugins/sv-inspector/package.json index aa2cb62c6c..4db4ca8d6d 100644 --- a/plugins/sv-inspector/package.json +++ b/plugins/sv-inspector/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-sv-inspector", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 SV inspector view", "keywords": [ "jbrowse", diff --git a/plugins/svg/package.json b/plugins/svg/package.json index 4ff64f3fd1..61706e80b7 100644 --- a/plugins/svg/package.json +++ b/plugins/svg/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-svg", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 plugin for svg features", "keywords": [ "jbrowse", diff --git a/plugins/text-indexing/package.json b/plugins/text-indexing/package.json index 1492d08947..941ca1c6c5 100644 --- a/plugins/text-indexing/package.json +++ b/plugins/text-indexing/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-text-indexing", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 text indexing rpc method", "keywords": [ "jbrowse", @@ -36,7 +36,7 @@ "clean": "rimraf dist esm *.tsbuildinfo" }, "dependencies": { - "@jbrowse/text-indexing": "^2.7.2" + "@jbrowse/text-indexing": "^2.8.0" }, "peerDependencies": { "@jbrowse/core": "^2.0.0", diff --git a/plugins/trix/package.json b/plugins/trix/package.json index 5f4edd7d98..5b05f85881 100644 --- a/plugins/trix/package.json +++ b/plugins/trix/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-trix", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 trix text search adapter", "keywords": [ "jbrowse", diff --git a/plugins/variants/package.json b/plugins/variants/package.json index bfdafa60cc..4d13966c47 100644 --- a/plugins/variants/package.json +++ b/plugins/variants/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-variants", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 variant adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/plugins/wiggle/package.json b/plugins/wiggle/package.json index 4850cf82a3..53e94e8118 100644 --- a/plugins/wiggle/package.json +++ b/plugins/wiggle/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/plugin-wiggle", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 wiggle adapters, tracks, etc.", "keywords": [ "jbrowse", diff --git a/products/jbrowse-cli/README.md b/products/jbrowse-cli/README.md index 6cc0786096..79e5f8fd8e 100644 --- a/products/jbrowse-cli/README.md +++ b/products/jbrowse-cli/README.md @@ -204,7 +204,7 @@ EXAMPLES ``` _See code: -[src/commands/add-assembly.ts](https://github.com/GMOD/jbrowse-components/blob/v2.7.2/products/jbrowse-cli/src/commands/add-assembly.ts)_ +[src/commands/add-assembly.ts](https://github.com/GMOD/jbrowse-components/blob/v2.8.0/products/jbrowse-cli/src/commands/add-assembly.ts)_ ## `jbrowse add-connection CONNECTIONURLORPATH` @@ -255,7 +255,7 @@ EXAMPLES ``` _See code: -[src/commands/add-connection.ts](https://github.com/GMOD/jbrowse-components/blob/v2.7.2/products/jbrowse-cli/src/commands/add-connection.ts)_ +[src/commands/add-connection.ts](https://github.com/GMOD/jbrowse-components/blob/v2.8.0/products/jbrowse-cli/src/commands/add-connection.ts)_ ## `jbrowse add-track TRACK` @@ -336,7 +336,7 @@ EXAMPLES ``` _See code: -[src/commands/add-track.ts](https://github.com/GMOD/jbrowse-components/blob/v2.7.2/products/jbrowse-cli/src/commands/add-track.ts)_ +[src/commands/add-track.ts](https://github.com/GMOD/jbrowse-components/blob/v2.8.0/products/jbrowse-cli/src/commands/add-track.ts)_ ## `jbrowse add-track-json TRACK` @@ -366,7 +366,7 @@ EXAMPLES ``` _See code: -[src/commands/add-track-json.ts](https://github.com/GMOD/jbrowse-components/blob/v2.7.2/products/jbrowse-cli/src/commands/add-track-json.ts)_ +[src/commands/add-track-json.ts](https://github.com/GMOD/jbrowse-components/blob/v2.8.0/products/jbrowse-cli/src/commands/add-track-json.ts)_ ## `jbrowse admin-server` @@ -397,7 +397,7 @@ EXAMPLES ``` _See code: -[src/commands/admin-server.ts](https://github.com/GMOD/jbrowse-components/blob/v2.7.2/products/jbrowse-cli/src/commands/admin-server.ts)_ +[src/commands/admin-server.ts](https://github.com/GMOD/jbrowse-components/blob/v2.8.0/products/jbrowse-cli/src/commands/admin-server.ts)_ ## `jbrowse create LOCALPATH` @@ -454,7 +454,7 @@ EXAMPLES ``` _See code: -[src/commands/create.ts](https://github.com/GMOD/jbrowse-components/blob/v2.7.2/products/jbrowse-cli/src/commands/create.ts)_ +[src/commands/create.ts](https://github.com/GMOD/jbrowse-components/blob/v2.8.0/products/jbrowse-cli/src/commands/create.ts)_ ## `jbrowse help [COMMANDS]` @@ -503,7 +503,7 @@ EXAMPLES ``` _See code: -[src/commands/remove-track.ts](https://github.com/GMOD/jbrowse-components/blob/v2.7.2/products/jbrowse-cli/src/commands/remove-track.ts)_ +[src/commands/remove-track.ts](https://github.com/GMOD/jbrowse-components/blob/v2.8.0/products/jbrowse-cli/src/commands/remove-track.ts)_ ## `jbrowse set-default-session` @@ -542,7 +542,7 @@ EXAMPLES ``` _See code: -[src/commands/set-default-session.ts](https://github.com/GMOD/jbrowse-components/blob/v2.7.2/products/jbrowse-cli/src/commands/set-default-session.ts)_ +[src/commands/set-default-session.ts](https://github.com/GMOD/jbrowse-components/blob/v2.8.0/products/jbrowse-cli/src/commands/set-default-session.ts)_ ## `jbrowse sort-gff FILE` @@ -570,7 +570,7 @@ EXAMPLES ``` _See code: -[src/commands/sort-gff.ts](https://github.com/GMOD/jbrowse-components/blob/v2.7.2/products/jbrowse-cli/src/commands/sort-gff.ts)_ +[src/commands/sort-gff.ts](https://github.com/GMOD/jbrowse-components/blob/v2.8.0/products/jbrowse-cli/src/commands/sort-gff.ts)_ ## `jbrowse text-index` @@ -637,7 +637,7 @@ EXAMPLES ``` _See code: -[src/commands/text-index.ts](https://github.com/GMOD/jbrowse-components/blob/v2.7.2/products/jbrowse-cli/src/commands/text-index.ts)_ +[src/commands/text-index.ts](https://github.com/GMOD/jbrowse-components/blob/v2.8.0/products/jbrowse-cli/src/commands/text-index.ts)_ ## `jbrowse upgrade [LOCALPATH]` @@ -700,7 +700,7 @@ EXAMPLES ``` _See code: -[src/commands/upgrade.ts](https://github.com/GMOD/jbrowse-components/blob/v2.7.2/products/jbrowse-cli/src/commands/upgrade.ts)_ +[src/commands/upgrade.ts](https://github.com/GMOD/jbrowse-components/blob/v2.8.0/products/jbrowse-cli/src/commands/upgrade.ts)_ diff --git a/products/jbrowse-cli/package.json b/products/jbrowse-cli/package.json index 733b5c30e5..7a5e8f3def 100644 --- a/products/jbrowse-cli/package.json +++ b/products/jbrowse-cli/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/cli", - "version": "2.7.2", + "version": "2.8.0", "description": "A command line tool for working with JBrowse 2", "keywords": [ "jbrowse", diff --git a/products/jbrowse-desktop/package.json b/products/jbrowse-desktop/package.json index 0e452b20d3..0e14b9face 100644 --- a/products/jbrowse-desktop/package.json +++ b/products/jbrowse-desktop/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/desktop", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse desktop application specialized to inspect structural variants", "license": "Apache-2.0", "homepage": "./", @@ -42,40 +42,40 @@ "@emotion/react": "^11.9.0", "@fontsource/roboto": "^5.0.2", "@gmod/faidx": "^1.0.1", - "@jbrowse/app-core": "^2.7.2", - "@jbrowse/core": "^2.7.2", - "@jbrowse/plugin-alignments": "^2.7.2", - "@jbrowse/plugin-arc": "^2.7.2", - "@jbrowse/plugin-authentication": "^2.7.2", - "@jbrowse/plugin-bed": "^2.7.2", - "@jbrowse/plugin-breakpoint-split-view": "^2.7.2", - "@jbrowse/plugin-circular-view": "^2.7.2", - "@jbrowse/plugin-comparative-adapters": "^2.7.2", - "@jbrowse/plugin-config": "^2.7.2", - "@jbrowse/plugin-data-management": "^2.7.2", - "@jbrowse/plugin-dotplot-view": "^2.7.2", - "@jbrowse/plugin-gccontent": "^2.7.2", - "@jbrowse/plugin-gff3": "^2.7.2", - "@jbrowse/plugin-grid-bookmark": "^2.7.2", - "@jbrowse/plugin-gtf": "^2.7.2", - "@jbrowse/plugin-hic": "^2.7.2", - "@jbrowse/plugin-jobs-management": "^2.7.2", - "@jbrowse/plugin-legacy-jbrowse": "^2.7.2", - "@jbrowse/plugin-linear-comparative-view": "^2.7.2", - "@jbrowse/plugin-linear-genome-view": "^2.7.2", - "@jbrowse/plugin-lollipop": "^2.7.2", - "@jbrowse/plugin-menus": "^2.7.2", - "@jbrowse/plugin-rdf": "^2.7.2", - "@jbrowse/plugin-sequence": "^2.7.2", - "@jbrowse/plugin-spreadsheet-view": "^2.7.2", - "@jbrowse/plugin-sv-inspector": "^2.7.2", - "@jbrowse/plugin-svg": "^2.7.2", - "@jbrowse/plugin-text-indexing": "^2.7.2", - "@jbrowse/plugin-trix": "^2.7.2", - "@jbrowse/plugin-variants": "^2.7.2", - "@jbrowse/plugin-wiggle": "^2.7.2", - "@jbrowse/product-core": "^2.7.2", - "@jbrowse/text-indexing": "^2.7.2", + "@jbrowse/app-core": "^2.8.0", + "@jbrowse/core": "^2.8.0", + "@jbrowse/plugin-alignments": "^2.8.0", + "@jbrowse/plugin-arc": "^2.8.0", + "@jbrowse/plugin-authentication": "^2.8.0", + "@jbrowse/plugin-bed": "^2.8.0", + "@jbrowse/plugin-breakpoint-split-view": "^2.8.0", + "@jbrowse/plugin-circular-view": "^2.8.0", + "@jbrowse/plugin-comparative-adapters": "^2.8.0", + "@jbrowse/plugin-config": "^2.8.0", + "@jbrowse/plugin-data-management": "^2.8.0", + "@jbrowse/plugin-dotplot-view": "^2.8.0", + "@jbrowse/plugin-gccontent": "^2.8.0", + "@jbrowse/plugin-gff3": "^2.8.0", + "@jbrowse/plugin-grid-bookmark": "^2.8.0", + "@jbrowse/plugin-gtf": "^2.8.0", + "@jbrowse/plugin-hic": "^2.8.0", + "@jbrowse/plugin-jobs-management": "^2.8.0", + "@jbrowse/plugin-legacy-jbrowse": "^2.8.0", + "@jbrowse/plugin-linear-comparative-view": "^2.8.0", + "@jbrowse/plugin-linear-genome-view": "^2.8.0", + "@jbrowse/plugin-lollipop": "^2.8.0", + "@jbrowse/plugin-menus": "^2.8.0", + "@jbrowse/plugin-rdf": "^2.8.0", + "@jbrowse/plugin-sequence": "^2.8.0", + "@jbrowse/plugin-spreadsheet-view": "^2.8.0", + "@jbrowse/plugin-sv-inspector": "^2.8.0", + "@jbrowse/plugin-svg": "^2.8.0", + "@jbrowse/plugin-text-indexing": "^2.8.0", + "@jbrowse/plugin-trix": "^2.8.0", + "@jbrowse/plugin-variants": "^2.8.0", + "@jbrowse/plugin-wiggle": "^2.8.0", + "@jbrowse/product-core": "^2.8.0", + "@jbrowse/text-indexing": "^2.8.0", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "@mui/x-data-grid": "^6.0.1", diff --git a/products/jbrowse-img/package.json b/products/jbrowse-img/package.json index e148a50fe9..bad81fc52f 100644 --- a/products/jbrowse-img/package.json +++ b/products/jbrowse-img/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/img", - "version": "2.7.2", + "version": "2.8.0", "main": "dist/index.js", "module": "esm/index.js", "author": "JBrowse Team", @@ -28,8 +28,8 @@ "@babel/runtime": "^7.17.9", "@emotion/cache": "^11.7.1", "@emotion/react": "^11.9.0", - "@jbrowse/plugin-linear-genome-view": "^2.7.2", - "@jbrowse/react-linear-genome-view": "^2.7.2", + "@jbrowse/plugin-linear-genome-view": "^2.8.0", + "@jbrowse/react-linear-genome-view": "^2.8.0", "abortcontroller-polyfill": "^1.7.3", "canvas": "^2.9.1", "jsdom": "^22.1.0", diff --git a/products/jbrowse-predefined-sessions/package.json b/products/jbrowse-predefined-sessions/package.json index 839dd13957..972070df23 100644 --- a/products/jbrowse-predefined-sessions/package.json +++ b/products/jbrowse-predefined-sessions/package.json @@ -1,6 +1,6 @@ { "name": "jbrowse-predefined-sessions", - "version": "2.7.2", + "version": "2.8.0", "main": "index.js", "author": "JBrowse Team", "license": "MIT", diff --git a/products/jbrowse-react-app/package.json b/products/jbrowse-react-app/package.json index 6b82c191eb..d2c1e23655 100644 --- a/products/jbrowse-react-app/package.json +++ b/products/jbrowse-react-app/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/react-app", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 app React component", "keywords": [ "jbrowse", @@ -45,38 +45,38 @@ "@emotion/cache": "^11.7.1", "@emotion/react": "^11.9.0", "@emotion/styled": "^11.8.1", - "@jbrowse/app-core": "^2.7.2", - "@jbrowse/core": "^2.7.2", - "@jbrowse/plugin-alignments": "^2.7.2", - "@jbrowse/plugin-arc": "^2.7.2", - "@jbrowse/plugin-authentication": "^2.7.2", - "@jbrowse/plugin-bed": "^2.7.2", - "@jbrowse/plugin-breakpoint-split-view": "^2.7.2", - "@jbrowse/plugin-circular-view": "^2.7.2", - "@jbrowse/plugin-comparative-adapters": "^2.7.2", - "@jbrowse/plugin-config": "^2.7.2", - "@jbrowse/plugin-data-management": "^2.7.2", - "@jbrowse/plugin-dotplot-view": "^2.7.2", - "@jbrowse/plugin-gccontent": "^2.7.2", - "@jbrowse/plugin-gff3": "^2.7.2", - "@jbrowse/plugin-grid-bookmark": "^2.7.2", - "@jbrowse/plugin-gtf": "^2.7.2", - "@jbrowse/plugin-hic": "^2.7.2", - "@jbrowse/plugin-legacy-jbrowse": "^2.7.2", - "@jbrowse/plugin-linear-comparative-view": "^2.7.2", - "@jbrowse/plugin-linear-genome-view": "^2.7.2", - "@jbrowse/plugin-lollipop": "^2.7.2", - "@jbrowse/plugin-menus": "^2.7.2", - "@jbrowse/plugin-rdf": "^2.7.2", - "@jbrowse/plugin-sequence": "^2.7.2", - "@jbrowse/plugin-spreadsheet-view": "^2.7.2", - "@jbrowse/plugin-sv-inspector": "^2.7.2", - "@jbrowse/plugin-svg": "^2.7.2", - "@jbrowse/plugin-trix": "^2.7.2", - "@jbrowse/plugin-variants": "^2.7.2", - "@jbrowse/plugin-wiggle": "^2.7.2", - "@jbrowse/product-core": "^2.7.2", - "@jbrowse/web-core": "^2.7.2", + "@jbrowse/app-core": "^2.8.0", + "@jbrowse/core": "^2.8.0", + "@jbrowse/plugin-alignments": "^2.8.0", + "@jbrowse/plugin-arc": "^2.8.0", + "@jbrowse/plugin-authentication": "^2.8.0", + "@jbrowse/plugin-bed": "^2.8.0", + "@jbrowse/plugin-breakpoint-split-view": "^2.8.0", + "@jbrowse/plugin-circular-view": "^2.8.0", + "@jbrowse/plugin-comparative-adapters": "^2.8.0", + "@jbrowse/plugin-config": "^2.8.0", + "@jbrowse/plugin-data-management": "^2.8.0", + "@jbrowse/plugin-dotplot-view": "^2.8.0", + "@jbrowse/plugin-gccontent": "^2.8.0", + "@jbrowse/plugin-gff3": "^2.8.0", + "@jbrowse/plugin-grid-bookmark": "^2.8.0", + "@jbrowse/plugin-gtf": "^2.8.0", + "@jbrowse/plugin-hic": "^2.8.0", + "@jbrowse/plugin-legacy-jbrowse": "^2.8.0", + "@jbrowse/plugin-linear-comparative-view": "^2.8.0", + "@jbrowse/plugin-linear-genome-view": "^2.8.0", + "@jbrowse/plugin-lollipop": "^2.8.0", + "@jbrowse/plugin-menus": "^2.8.0", + "@jbrowse/plugin-rdf": "^2.8.0", + "@jbrowse/plugin-sequence": "^2.8.0", + "@jbrowse/plugin-spreadsheet-view": "^2.8.0", + "@jbrowse/plugin-sv-inspector": "^2.8.0", + "@jbrowse/plugin-svg": "^2.8.0", + "@jbrowse/plugin-trix": "^2.8.0", + "@jbrowse/plugin-variants": "^2.8.0", + "@jbrowse/plugin-wiggle": "^2.8.0", + "@jbrowse/product-core": "^2.8.0", + "@jbrowse/web-core": "^2.8.0", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "@mui/x-data-grid": "^6.0.1", diff --git a/products/jbrowse-react-circular-genome-view/package.json b/products/jbrowse-react-circular-genome-view/package.json index 616c73b418..dfd658ff32 100644 --- a/products/jbrowse-react-circular-genome-view/package.json +++ b/products/jbrowse-react-circular-genome-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/react-circular-genome-view", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 circular genome view React component", "keywords": [ "jbrowse", @@ -41,17 +41,17 @@ "@emotion/cache": "^11.7.1", "@emotion/react": "^11.9.0", "@emotion/styled": "^11.8.1", - "@jbrowse/core": "^2.7.2", - "@jbrowse/embedded-core": "^2.7.2", - "@jbrowse/plugin-authentication": "^2.7.2", - "@jbrowse/plugin-circular-view": "^2.7.2", - "@jbrowse/plugin-config": "^2.7.2", - "@jbrowse/plugin-data-management": "^2.7.2", - "@jbrowse/plugin-linear-genome-view": "^2.7.2", - "@jbrowse/plugin-sequence": "^2.7.2", - "@jbrowse/plugin-variants": "^2.7.2", - "@jbrowse/plugin-wiggle": "^2.7.2", - "@jbrowse/product-core": "^2.7.2", + "@jbrowse/core": "^2.8.0", + "@jbrowse/embedded-core": "^2.8.0", + "@jbrowse/plugin-authentication": "^2.8.0", + "@jbrowse/plugin-circular-view": "^2.8.0", + "@jbrowse/plugin-config": "^2.8.0", + "@jbrowse/plugin-data-management": "^2.8.0", + "@jbrowse/plugin-linear-genome-view": "^2.8.0", + "@jbrowse/plugin-sequence": "^2.8.0", + "@jbrowse/plugin-variants": "^2.8.0", + "@jbrowse/plugin-wiggle": "^2.8.0", + "@jbrowse/product-core": "^2.8.0", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "mobx": "^6.6.0", diff --git a/products/jbrowse-react-linear-genome-view/package.json b/products/jbrowse-react-linear-genome-view/package.json index 476f478f1c..7e66ef2566 100644 --- a/products/jbrowse-react-linear-genome-view/package.json +++ b/products/jbrowse-react-linear-genome-view/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/react-linear-genome-view", - "version": "2.7.2", + "version": "2.8.0", "description": "JBrowse 2 linear genome view React component", "keywords": [ "jbrowse", @@ -48,24 +48,24 @@ "@emotion/cache": "^11.7.1", "@emotion/react": "^11.9.0", "@emotion/styled": "^11.8.1", - "@jbrowse/core": "^2.7.2", - "@jbrowse/embedded-core": "^2.7.2", - "@jbrowse/plugin-alignments": "^2.7.2", - "@jbrowse/plugin-authentication": "^2.7.2", - "@jbrowse/plugin-bed": "^2.7.2", - "@jbrowse/plugin-circular-view": "^2.7.2", - "@jbrowse/plugin-config": "^2.7.2", - "@jbrowse/plugin-data-management": "^2.7.2", - "@jbrowse/plugin-gccontent": "^2.7.2", - "@jbrowse/plugin-gff3": "^2.7.2", - "@jbrowse/plugin-legacy-jbrowse": "^2.7.2", - "@jbrowse/plugin-linear-genome-view": "^2.7.2", - "@jbrowse/plugin-sequence": "^2.7.2", - "@jbrowse/plugin-svg": "^2.7.2", - "@jbrowse/plugin-trix": "^2.7.2", - "@jbrowse/plugin-variants": "^2.7.2", - "@jbrowse/plugin-wiggle": "^2.7.2", - "@jbrowse/product-core": "^2.7.2", + "@jbrowse/core": "^2.8.0", + "@jbrowse/embedded-core": "^2.8.0", + "@jbrowse/plugin-alignments": "^2.8.0", + "@jbrowse/plugin-authentication": "^2.8.0", + "@jbrowse/plugin-bed": "^2.8.0", + "@jbrowse/plugin-circular-view": "^2.8.0", + "@jbrowse/plugin-config": "^2.8.0", + "@jbrowse/plugin-data-management": "^2.8.0", + "@jbrowse/plugin-gccontent": "^2.8.0", + "@jbrowse/plugin-gff3": "^2.8.0", + "@jbrowse/plugin-legacy-jbrowse": "^2.8.0", + "@jbrowse/plugin-linear-genome-view": "^2.8.0", + "@jbrowse/plugin-sequence": "^2.8.0", + "@jbrowse/plugin-svg": "^2.8.0", + "@jbrowse/plugin-trix": "^2.8.0", + "@jbrowse/plugin-variants": "^2.8.0", + "@jbrowse/plugin-wiggle": "^2.8.0", + "@jbrowse/product-core": "^2.8.0", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "@r2wc/react-to-web-component": "^2.0.3", diff --git a/products/jbrowse-web/package.json b/products/jbrowse-web/package.json index 759fc8ef2b..5b32f6354d 100644 --- a/products/jbrowse-web/package.json +++ b/products/jbrowse-web/package.json @@ -1,6 +1,6 @@ { "name": "@jbrowse/web", - "version": "2.7.2", + "version": "2.8.0", "license": "Apache-2.0", "homepage": ".", "main": "build", @@ -15,38 +15,38 @@ }, "dependencies": { "@fontsource/roboto": "^5.0.2", - "@jbrowse/app-core": "^2.7.2", - "@jbrowse/core": "^2.7.2", - "@jbrowse/plugin-alignments": "^2.7.2", - "@jbrowse/plugin-arc": "^2.7.2", - "@jbrowse/plugin-authentication": "^2.7.2", - "@jbrowse/plugin-bed": "^2.7.2", - "@jbrowse/plugin-breakpoint-split-view": "^2.7.2", - "@jbrowse/plugin-circular-view": "^2.7.2", - "@jbrowse/plugin-comparative-adapters": "^2.7.2", - "@jbrowse/plugin-config": "^2.7.2", - "@jbrowse/plugin-data-management": "^2.7.2", - "@jbrowse/plugin-dotplot-view": "^2.7.2", - "@jbrowse/plugin-gccontent": "^2.7.2", - "@jbrowse/plugin-gff3": "^2.7.2", - "@jbrowse/plugin-grid-bookmark": "^2.7.2", - "@jbrowse/plugin-gtf": "^2.7.2", - "@jbrowse/plugin-hic": "^2.7.2", - "@jbrowse/plugin-legacy-jbrowse": "^2.7.2", - "@jbrowse/plugin-linear-comparative-view": "^2.7.2", - "@jbrowse/plugin-linear-genome-view": "^2.7.2", - "@jbrowse/plugin-lollipop": "^2.7.2", - "@jbrowse/plugin-menus": "^2.7.2", - "@jbrowse/plugin-rdf": "^2.7.2", - "@jbrowse/plugin-sequence": "^2.7.2", - "@jbrowse/plugin-spreadsheet-view": "^2.7.2", - "@jbrowse/plugin-sv-inspector": "^2.7.2", - "@jbrowse/plugin-svg": "^2.7.2", - "@jbrowse/plugin-trix": "^2.7.2", - "@jbrowse/plugin-variants": "^2.7.2", - "@jbrowse/plugin-wiggle": "^2.7.2", - "@jbrowse/product-core": "^2.7.2", - "@jbrowse/web-core": "^2.7.2", + "@jbrowse/app-core": "^2.8.0", + "@jbrowse/core": "^2.8.0", + "@jbrowse/plugin-alignments": "^2.8.0", + "@jbrowse/plugin-arc": "^2.8.0", + "@jbrowse/plugin-authentication": "^2.8.0", + "@jbrowse/plugin-bed": "^2.8.0", + "@jbrowse/plugin-breakpoint-split-view": "^2.8.0", + "@jbrowse/plugin-circular-view": "^2.8.0", + "@jbrowse/plugin-comparative-adapters": "^2.8.0", + "@jbrowse/plugin-config": "^2.8.0", + "@jbrowse/plugin-data-management": "^2.8.0", + "@jbrowse/plugin-dotplot-view": "^2.8.0", + "@jbrowse/plugin-gccontent": "^2.8.0", + "@jbrowse/plugin-gff3": "^2.8.0", + "@jbrowse/plugin-grid-bookmark": "^2.8.0", + "@jbrowse/plugin-gtf": "^2.8.0", + "@jbrowse/plugin-hic": "^2.8.0", + "@jbrowse/plugin-legacy-jbrowse": "^2.8.0", + "@jbrowse/plugin-linear-comparative-view": "^2.8.0", + "@jbrowse/plugin-linear-genome-view": "^2.8.0", + "@jbrowse/plugin-lollipop": "^2.8.0", + "@jbrowse/plugin-menus": "^2.8.0", + "@jbrowse/plugin-rdf": "^2.8.0", + "@jbrowse/plugin-sequence": "^2.8.0", + "@jbrowse/plugin-spreadsheet-view": "^2.8.0", + "@jbrowse/plugin-sv-inspector": "^2.8.0", + "@jbrowse/plugin-svg": "^2.8.0", + "@jbrowse/plugin-trix": "^2.8.0", + "@jbrowse/plugin-variants": "^2.8.0", + "@jbrowse/plugin-wiggle": "^2.8.0", + "@jbrowse/product-core": "^2.8.0", + "@jbrowse/web-core": "^2.8.0", "@mui/icons-material": "^5.0.0", "@mui/material": "^5.10.17", "@mui/x-data-grid": "^6.0.1",