Functional CMake build scripts (PR #1)

.gitignore

@@ -0,0 +1,8 @@
+outputs/*
+src/externals/mct/*/*.o
+src/externals/mct/*/*.mod
+src/externals/mct/*/*.a
+src/externals/mct/Makefile.conf
+src/externals/mct/config.h
+src/externals/mct/config.log
+src/externals/mct/config.status

bootstrap

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+#!/usr/bin/env bash
+
+set -Eeo pipefail
+
+# Clone CLM5
+git clone -b release-clm5.0 https://github.com/ESCOMP/CTSM.git clm5.0 
+(
+    cd clm5.0
+    git checkout dc5ea974c3 # most recent commit as of 2020-03-04
+    ./manage_externals/checkout_externals
+)
+
+# Create src dirs
+CLM5_ROOT=`realpath clm5.0`
+SRC_ROOT=src
+mkdir $SRC_ROOT
+cd $SRC_ROOT
+mkdir -p externals/{gptl,mct,pio1} csm_share \
+      clm5 stub_comps datm mosart cesm
+
+# GPTL 
+cp $CLM5_ROOT/cime/src/share/timing/* externals/gptl
+echo "Imported GPTL source files"
+
+# MCT 
+cp -rf $CLM5_ROOT/cime/src/externals/mct/* externals/mct
+echo "Imported MCT source files"
+
+# PIO 
+cp -rf $CLM5_ROOT/cime/src/externals/pio1/pio/* externals/pio1
+echo "Imported PIO1 source files"
+
+# CSM share
+(
+    cd csm_share
+    mkdir esmf_wrf_timemgr mct streams util
+    cp -rf $CLM5_ROOT/cime/src/share/esmf_wrf_timemgr/* esmf_wrf_timemgr
+    cp -rf $CLM5_ROOT/cime/src/drivers/mct/shr/* mct
+    cp -rf $CLM5_ROOT/cime/src/share/streams/* streams
+    cp -rf $CLM5_ROOT/cime/src/share/util/* util
+)
+echo "Imported CSM share source files"
+
+# CLM5 
+clm_dirs=(
+    main
+    biogeophys
+    biogeochem
+    soilbiogeochem
+    dyn_subgrid
+    init_interp
+    fates/main
+    fates/biogeophys
+    fates/biogeochem
+    fates/fire
+    fates/parteh
+    utils
+    cpl
+)
+for src_dir in ${clm_dirs[*]}; do
+    dest_dir=clm5/$src_dir
+    mkdir -p $dest_dir
+    cp -rf $CLM5_ROOT/src/$src_dir/* $dest_dir
+done
+echo "Imported CLM source files"
+
+# Stub components 
+cp $CLM5_ROOT/cime/src/components/stub_comps/sglc/cpl/glc_comp_mct.F90 stub_comps
+cp $CLM5_ROOT/cime/src/components/stub_comps/socn/cpl/ocn_comp_mct.F90 stub_comps
+cp $CLM5_ROOT/cime/src/components/stub_comps/sesp/cpl/esp_comp_mct.F90 stub_comps
+cp $CLM5_ROOT/cime/src/components/stub_comps/sice/cpl/ice_comp_mct.F90 stub_comps
+cp $CLM5_ROOT/cime/src/components/stub_comps/swav/cpl/wav_comp_mct.F90 stub_comps
+echo "Imported stub components source files"
+
+# DATM 
+cp $CLM5_ROOT/cime/src/components/data_comps/datm/datm_shr_mod.F90 datm
+cp $CLM5_ROOT/cime/src/components/data_comps/datm/datm_comp_mod.F90 datm
+cp $CLM5_ROOT/cime/src/components/data_comps/datm/mct/atm_comp_mct.F90 datm
+echo "Imported DATM source files"
+
+# MOSART
+cp -rf $CLM5_ROOT/components/mosart/* mosart
+rm -rf mosart/cime_config
+echo "Imported MOSART source files"
+
+# CESM 
+cp $CLM5_ROOT/cime/src/drivers/mct/main/* cesm
+echo "Imported CESM source files"
+
+# Copy LICENSE file
+cp $CLM5_ROOT/LICENSE .

build_tools/build.juwels-centos8

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+#!/usr/bin/env bash
+
+# ------- User-specified variables ------------
+ARCH="juwels-centos8"
+CLM5_TSMP_ROOT=$(git rev-parse --show-toplevel)
+BUILD_FOLDER="$CLM5_TSMP_ROOT/outputs/$ARCH/build"
+INSTALL_PATH="$CLM5_TSMP_ROOT/outputs/$ARCH/run"
+# ---------------------------------------------
+
+module purge
+module use $OTHERSTAGES
+module load Stages/2020
+module load Intel
+module load ParaStationMPI
+module load ESMF
+module load NCO
+module load Perl
+module load CMake
+module load parallel-netcdf
+module load imkl
+module load NCL
+module load Python
+module li
+
+echo "NetCDF_C_PATH=$EBROOTNETCDF"
+echo "NetCDF_Fortran_PATH=$EBROOTNETCDFMINFORTRAN"
+echo "PnetCDF_C_PATH=$EBROOTPARALLELMINNETCDF"
+GENF90_PATH=$(pwd)
+rm -rf $BUILD_FOLDER
+cmake -S "$CLM5_TSMP_ROOT/src" \
+      -B "$BUILD_FOLDER" \
+      -DCMAKE_MODULE_PATH="$(pwd)/cmake" \
+      -DCMAKE_C_COMPILER=mpicc \
+      -DCMAKE_Fortran_COMPILER=mpifort \
+      -DGENF90_PATH=$GENF90_PATH \
+      -DNetCDF_C_PATH=$EBROOTNETCDF \
+      -DNetCDF_Fortran_PATH=$EBROOTNETCDFMINFORTRAN \
+      -DPnetCDF_PATH=$EBROOTPARALLELMINNETCDF
+cmake --build "$BUILD_FOLDER" --clean-first
+cmake --install "$BUILD_FOLDER"

build_tools/build.ubuntu-20.04LTS

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+#!/usr/bin/env bash
+
+# ------- User-specified variables ------------
+ARCH="ubuntu-20.04LTS"
+CLM5_TSMP_ROOT=$(git rev-parse --show-toplevel)
+BUILD_FOLDER="$CLM5_TSMP_ROOT/outputs/$ARCH/build"
+INSTALL_PATH="$CLM5_TSMP_ROOT/outputs/$ARCH/run"
+# ---------------------------------------------
+
+NetCDF_ROOT=/opt/custom
+GENF90_PATH=$(pwd)
+rm -rf $BUILD_FOLDER
+cmake -S "$CLM5_TSMP_ROOT/src" \
+      -B "$BUILD_FOLDER" \
+      -DCMAKE_INSTALL_PREFIX="$INSTALL_PATH" \
+      -DCMAKE_MODULE_PATH="$(pwd)/cmake" \
+      -DCMAKE_C_COMPILER=mpicc \
+      -DCMAKE_Fortran_COMPILER=mpifort \
+      -DGENF90_PATH=$GENF90_PATH \
+      -DNetCDF_PATH=$NetCDF_ROOT \
+      -DPnetCDF_PATH=$NetCDF_ROOT
+cmake --build "$BUILD_FOLDER" --clean-first
+cmake --install "$BUILD_FOLDER"