diff --git a/ehr_risk_kp.yaml b/ehr_risk_kp.yaml index ccc8329..dd3e362 100644 --- a/ehr_risk_kp.yaml +++ b/ehr_risk_kp.yaml @@ -964,4904 +964,6853 @@ components: ## - association.classifier ## - association.original_predicate ## - association.provided_date - DiseaseMONDO_increased_DiseaseMONDO: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.MONDO%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO - ## 2963 records - - supportBatch: true - useTemplating: true ## flag to say templating is being used below - inputs: - - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-MONDO" - # testExamples: - # - qInput: "MONDO:0005068" ## myocardial infarction (disease) - # oneOutput: "MONDO:0005904" ## pericarditis (disease) - DiseaseMONDO_increased_DiseaseMONDO-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-MONDO" - # testExamples: - # - qInput: "MONDO:0005009" ## congestive heart failure - # oneOutput: "MONDO:0005071" ## nervous system disorder - DiseaseMONDO_increased_DiseaseNCIT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.MONDO%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT - ## 9 records - - supportBatch: true - useTemplating: true - inputs: + ChemCHEBI_decreased_DiseaseMONDO: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO + ## 34917 records + -supportBatch: true + useTemplating: true + inputs: + - id: CHEBI + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "CHEBI:3732" ## clarithromycin + # oneOutput: "MONDO:0004721" ## liver neoplasm + ChemCHEBI_decreased_DiseaseMONDO_rev: + -supportBatch: true + useTemplating: true + inputs: - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: NCIT - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-NCIT" - # testExamples: - # - qInput: "MONDO:0005300" ## chronic kidney disease - # oneOutput: "NCIT:C116994" ## Lupus Anticoagulant Disorder - DiseaseMONDO_increased_DiseaseNCIT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.CHEBI, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: CHEBI + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-CHEBI" + # testExamples: + # - qInput: "MONDO:0005090" ## schizophrenia (disease) + # oneOutput: "CHEBI:107736" ## metoclopramide + ChemCHEBI_decreased_DiseaseNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT + ## 212 records + -supportBatch: true + useTemplating: true + inputs: + - id: CHEBI + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "CHEBI:7936" ## paroxetine + # oneOutput: "NCIT:C167118" ## Influenza A Virus Positive + ChemCHEBI_decreased_DiseaseNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-MONDO" - # testExamples: - # - qInput: "NCIT:C116994" ## Lupus Anticoagulant Disorder - # oneOutput: "MONDO:0005148" ## type 2 diabetes mellitus - DiseaseMONDO_increased_DiseaseSNOMEDCT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.MONDO%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT - ## 200 records - - supportBatch: true - useTemplating: true - inputs: - - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.CHEBI, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: CHEBI + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-CHEBI" + # testExamples: + # - qInput: "NCIT:C3588" ## Acute Myeloid Leukemia in Remission + # oneOutput: "CHEBI:3139" ## bleomycin + ChemCHEBI_decreased_DiseaseSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT + ## 2917 records + -supportBatch: true + useTemplating: true + inputs: + - id: CHEBI + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "CHEBI:9332" ## sulfamethoxazole + # oneOutput: "SNOMEDCT:386033004" ## Neuropathy (disorder) + ChemCHEBI_decreased_DiseaseSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" - # testExamples: - # - qInput: "MONDO:0005090" ## schizophrenia (disease) - # oneOutput: "SNOMEDCT:709073001" ## Neurocognitive disorder (disorder) - DiseaseMONDO_increased_DiseaseSNOMEDCT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.CHEBI, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: CHEBI + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-CHEBI" + # testExamples: + # - qInput: "SNOMEDCT:2415007" ## Lumbosacral radiculopathy (disorder) + # oneOutput: "CHEBI:4786" ## enalaprilat + ChemCHEBI_decreased_PhenoHP: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP + ## 24505 records + -supportBatch: true + useTemplating: true + inputs: + - id: CHEBI + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "CHEBI:9123" ## sertraline + # oneOutput: "HP:0031890" ## Increased urine urobilinogen + ChemCHEBI_decreased_PhenoHP_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: HP + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.CHEBI, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: CHEBI + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-CHEBI" + # testExamples: + # - qInput: "HP:0000964" ## Eczema + # oneOutput: "CHEBI:41423" ## celecoxib + ChemCHEBI_decreased_PhenoNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT + ## 2254 records + -supportBatch: true + useTemplating: true + inputs: + - id: CHEBI + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "CHEBI:3614" ## chlorhexidine + # oneOutput: "NCIT:C155871" ## Herpes Simplex Virus Infection + ChemCHEBI_decreased_PhenoNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.CHEBI, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: CHEBI + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-CHEBI" + # testExamples: + # - qInput: "NCIT:C141278" ## Adenovirus Positive + # oneOutput: "CHEBI:8435" ## prochlorperazine + ChemCHEBI_decreased_PhenoSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT + ## 244 records + -supportBatch: true + useTemplating: true + inputs: + - id: CHEBI + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "CHEBI:85264" ## clavulanate + # oneOutput: "SNOMEDCT:191519005" ## Dementia associated with another disease (disorder) + ChemCHEBI_decreased_PhenoSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-MONDO" - # testExamples: - # - qInput: "SNOMEDCT:386033004" ## Neuropathy (disorder) - # oneOutput: "MONDO:0005301" ## multiple sclerosis - DiseaseNCIT_increased_DiseaseMONDO: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO - ## 1 record - - supportBatch: true - useTemplating: true - inputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.CHEBI, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: CHEBI + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-CHEBI" + # testExamples: + # - qInput: "SNOMEDCT:127295002" ## Traumatic brain injury (disorder) + # oneOutput: "CHEBI:31440" ## copper sulfate + ChemCHEBI_decreased_ProcedureNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure%20AND%20_exists_:object.NCIT + ## 222 records + -supportBatch: true + useTemplating: true + inputs: + - id: CHEBI + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "CHEBI:8884" ## rocuronium + # oneOutput: "NCIT:C116994" ## Lupus Anticoagulant Disorder + ChemCHEBI_decreased_ProcedureNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-MONDO" - # testExamples: - # - qInput: "NCIT:C116994" ## Lupus Anticoagulant Disorder - # oneOutput: "MONDO:0007140" ## antiphospholipid syndrome - DiseaseNCIT_increased_DiseaseMONDO-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.CHEBI, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: CHEBI + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-CHEBI" + # testExamples: + # - qInput: "NCIT:C3588" ## Acute Myeloid Leukemia in Remission + # oneOutput: "CHEBI:9449" ## terbutaline + ChemCHEBI_increased_DiseaseMONDO: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO + ## 18248 records + -supportBatch: true + useTemplating: true + inputs: + - id: CHEBI + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "CHEBI:31441" ## fluticasone + # oneOutput: "MONDO:0009410" ## Addison disease + ChemCHEBI_increased_DiseaseMONDO_rev: + -supportBatch: true + useTemplating: true + inputs: - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.CHEBI, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: CHEBI + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-CHEBI" + # testExamples: + # - qInput: "MONDO:0008315" ## prostate cancer + # oneOutput: "CHEBI:47426" ## furosemide + ChemCHEBI_increased_DiseaseNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT + ## 131 records + -supportBatch: true + useTemplating: true + inputs: + - id: CHEBI + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "CHEBI:9449" ## terbutaline + # oneOutput: "NCIT:C3588" ## Acute Myeloid Leukemia in Remission + ChemCHEBI_increased_DiseaseNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Disease - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-NCIT" - # testExamples: - # - qInput: "MONDO:0007140" ## antiphospholipid syndrome - # oneOutput: "NCIT:C116994" ## Lupus Anticoagulant Disorder - ## no records for DiseaseNCIT_increased_DiseaseNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT - ## no records for DiseaseNCIT_increased_DiseaseSNOMEDCT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT - ## no records for DiseaseSNOMEDCT_increased_DiseaseMONDO - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO - ## no records for DiseaseSNOMEDCT_increased_DiseaseNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT - ## no records for DiseaseSNOMEDCT_increased_DiseaseSNOMEDCT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT - DiseaseMONDO_increased_PhenoHP: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.MONDO%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP - ## 2107 records - - supportBatch: true - useTemplating: true - inputs: - - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-HP" - # testExamples: - # - qInput: "MONDO:0005002" ## chronic obstructive pulmonary disease - # oneOutput: "HP:0000739" ## Anxiety - DiseaseMONDO_increased_PhenoHP-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.CHEBI, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: CHEBI + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-CHEBI" + # testExamples: + # - qInput: "NCIT:C159516" ## Liver Lesion + # oneOutput: "CHEBI:9943" ## venlafaxine + ChemCHEBI_increased_DiseaseSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT + ## 1542 records + -supportBatch: true + useTemplating: true + inputs: + - id: CHEBI + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "CHEBI:46632" ## clonidine + # oneOutput: "SNOMEDCT:197352008" ## Toxic hepatitis (disorder) + ChemCHEBI_increased_DiseaseSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.CHEBI, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: CHEBI + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-CHEBI" + # testExamples: + # - qInput: "SNOMEDCT:191519005" ## Dementia associated with another disease (disorder) + # oneOutput: "CHEBI:44185" ## methotrexate + ChemCHEBI_increased_PhenoHP: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP + ## 13225 records + -supportBatch: true + useTemplating: true + inputs: + - id: CHEBI + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "CHEBI:135738" ## clevidipine + # oneOutput: "HP:0003077" ## Hyperlipidemia + ChemCHEBI_increased_PhenoHP_rev: + -supportBatch: true + useTemplating: true + inputs: - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-MONDO" - # testExamples: - # - qInput: "HP:0000790" ## Hematuria - # oneOutput: "MONDO:0005002" ## chronic obstructive pulmonary disease - DiseaseMONDO_increased_PhenoNCIT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.MONDO%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT - ## 42 records - - supportBatch: true - useTemplating: true - inputs: - - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.CHEBI, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: CHEBI + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-CHEBI" + # testExamples: + # - qInput: "HP:0001397" ## Hepatic steatosis + # oneOutput: "CHEBI:6456" ## lidocaine + ChemCHEBI_increased_PhenoNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT + ## 1176 records + -supportBatch: true + useTemplating: true + inputs: + - id: CHEBI + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "CHEBI:8499" ## propranolol + # oneOutput: "NCIT:C3588" ## Acute Myeloid Leukemia in Remission + ChemCHEBI_increased_PhenoNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-NCIT" - # testExamples: - # - qInput: "MONDO:0005249" ## pneumonia - # oneOutput: "NCIT:C167118" ## Influenza B Virus Positive (Influenza A Virus Positive?) - DiseaseMONDO_increased_PhenoNCIT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.CHEBI, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: CHEBI + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-CHEBI" + # testExamples: + # - qInput: "NCIT:C146650" ## Clostridium difficile Positive + # oneOutput: "CHEBI:3207" ## budesonide + ChemCHEBI_increased_PhenoSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT + ## 99 records + -supportBatch: true + useTemplating: true + inputs: + - id: CHEBI + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "CHEBI:9600" ## timolol + # oneOutput: "SNOMEDCT:76571007" ## Septic shock (disorder) + ChemCHEBI_increased_PhenoSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.CHEBI, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: CHEBI + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-CHEBI" + # testExamples: + # - qInput: "SNOMEDCT:709073001" ## Neurocognitive disorder (disorder) + # oneOutput: "CHEBI:601027" ## aliskiren + ChemCHEBI_increased_ProcedureNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure%20AND%20_exists_:object.NCIT + ## 121 records + -supportBatch: true + useTemplating: true + inputs: + - id: CHEBI + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "CHEBI:3515" ## cefuroxime + # oneOutput: "NCIT:C141278" ## Adenovirus Positive + ChemCHEBI_increased_ProcedureNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-MONDO" - # testExamples: - # - qInput: "NCIT:C171647" ## SARS Coronavirus 2 Positive - # oneOutput: "MONDO:0005249" ## pneumonia - DiseaseMONDO_increased_PhenoSNOMEDCT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.MONDO%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT - ## 18 records - - supportBatch: true - useTemplating: true - inputs: + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.CHEBI, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: CHEBI + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-CHEBI" + # testExamples: + # - qInput: "NCIT:C3586" ## Acute Lymphoblastic Leukemia in Remission + # oneOutput: "CHEBI:33283" ## thiamine + ChemUNII_decreased_DiseaseMONDO: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO + ## 5902 records + -supportBatch: true + useTemplating: true + inputs: + - id: UNII + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.UNII", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "UNII:X85G7936GV" ## abciximab + # oneOutput: "MONDO:0005495" ## adrenal gland disease + ChemUNII_decreased_DiseaseMONDO_rev: + -supportBatch: true + useTemplating: true + inputs: - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.UNII, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: UNII + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-UNII" + # testExamples: + # - qInput: "MONDO:0005090" ## schizophrenia (disease) + # oneOutput: "UNII:2S9ZZM9Q9V" ## bevacizumab + ChemUNII_decreased_DiseaseNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT + ## 44 records + -supportBatch: true + useTemplating: true + inputs: + - id: UNII + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.UNII", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "UNII:7EV65EAW6H" ## lanolin + # oneOutput: "NCIT:C146650" ## Clostridium difficile Positive + ChemUNII_decreased_DiseaseNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.UNII, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: UNII + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-UNII" + # testExamples: + # - qInput: "NCIT:C171647" ## SARS Coronavirus 2 Positive + # oneOutput: "UNII:91X1KLU43E" ## golimumab + ChemUNII_decreased_DiseaseSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT + ## 505 records + -supportBatch: true + useTemplating: true + inputs: + - id: UNII + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.UNII", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "UNII:7D0YB67S97" ## abatacept + # oneOutput: "SNOMEDCT:54404000" ## Cervical radiculopathy (disorder) + ChemUNII_decreased_DiseaseSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" - # testExamples: - # - qInput: "MONDO:0004981" ## atrial fibrillation (disease) - # oneOutput: "SNOMEDCT:48440001" ## Arthritis due to gout (disorder) - DiseaseMONDO_increased_PhenoSNOMEDCT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.UNII, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: UNII + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-UNII" + # testExamples: + # - qInput: "SNOMEDCT:709073001" ## Neurocognitive disorder (disorder) + # oneOutput: "UNII:7EV65EAW6H" ## lanolin + ChemUNII_decreased_PhenoHP: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP + ## 3727 records + -supportBatch: true + useTemplating: true + inputs: + - id: UNII + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.UNII", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "UNII:I031V2H011" ## tocilizumab + # oneOutput: "HP:0000739" ## Anxiety + ChemUNII_decreased_PhenoHP_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: HP + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.UNII, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: UNII + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-UNII" + # testExamples: + # - qInput: "HP:0011897" ## Neutrophilia + # oneOutput: "UNII:9RV78Q2002" ## vedolizumab + ChemUNII_decreased_PhenoNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT + ## 381 records + -supportBatch: true + useTemplating: true + inputs: + - id: UNII + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.UNII", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "UNII:25ADE2236L" ## thrombin + # oneOutput: "NCIT:C3586" ## Acute Lymphoblastic Leukemia in Remission + ChemUNII_decreased_PhenoNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.UNII, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: UNII + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-UNII" + # testExamples: + # - qInput: "NCIT:C116994" ## Lupus Anticoagulant Disorder + # oneOutput: "UNII:P188ANX8CK" ## trastuzumab + ChemUNII_decreased_PhenoSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT + ## 39 records + -supportBatch: true + useTemplating: true + inputs: + - id: UNII + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.UNII", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "UNII:I031V2H011" ## tocilizumab + # oneOutput: "SNOMEDCT:191519005" ## Dementia associated with another disease (disorder) + ChemUNII_decreased_PhenoSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.UNII, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: UNII + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-UNII" + # testExamples: + # - qInput: "SNOMEDCT:239792003" ## Seronegative rheumatoid arthritis (disorder) + # oneOutput: "UNII:I5I8VB78VT" ## erenumab + ChemUNII_decreased_ProcedureNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure%20AND%20_exists_:object.NCIT + ## 43 records + -supportBatch: true + useTemplating: true + inputs: + - id: UNII + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["subject.UNII", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "UNII:OP401G7OJC" ## etanercept + # oneOutput: "NCIT:C146650" ## Clostridium difficile Positive + ChemUNII_decreased_ProcedureNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.UNII, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: UNII + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-UNII" + # testExamples: + # - qInput: "NCIT:C155871" ## Herpes Simplex Virus Infection + # oneOutput: "UNII:A10SJL62JY" ## ocrelizumab + ChemUNII_increased_DiseaseMONDO: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO + ## 2158 records + -supportBatch: true + useTemplating: true + inputs: + - id: UNII + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.UNII", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "UNII:A10SJL62JY" ## ocrelizumab + # oneOutput: "MONDO:0005090" ## schizophrenia (disease) + ChemUNII_increased_DiseaseMONDO_rev: + -supportBatch: true + useTemplating: true + inputs: - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-MONDO" - # testExamples: - # - qInput: "SNOMEDCT:48440001" ## Arthritis due to gout (disorder) - # oneOutput: "MONDO:0005044" ## hypertensive disorder - ## no records for DiseaseNCIT_increased_PhenoHP - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP - ## no records for DiseaseNCIT_increased_PhenoNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT - ## no records for DiseaseNCIT_increased_PhenoSNOMEDCT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT - DiseaseSNOMEDCT_increased_PhenoHP: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP - ## 52 records - - supportBatch: true - useTemplating: true - inputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.UNII, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: UNII + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-UNII" + # testExamples: + # - qInput: "MONDO:0002447" ## endometrial carcinoma (disease) + # oneOutput: "UNII:O43472U9X8" ## obinutuzumab + ChemUNII_increased_DiseaseNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT + ## 8 records + -supportBatch: true + useTemplating: true + inputs: + - id: UNII + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.UNII", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "UNII:E47C0NF7LV" ## enoxaparin + # oneOutput: "NCIT:C116994" ## Lupus Anticoagulant Disorder + ChemUNII_increased_DiseaseNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.UNII, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: UNII + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-UNII" + # testExamples: + # - qInput: "NCIT:C159516" ## Liver Lesion + # oneOutput: "UNII:73B0K5S26A" ## belimumab + ChemUNII_increased_DiseaseSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT + ## 171 records + -supportBatch: true + useTemplating: true + inputs: + - id: UNII + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.UNII", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "UNII:DQ448MW7KS" ## palivizumab + # oneOutput: "SNOMEDCT:197352008" ## Toxic hepatitis (disorder) + ChemUNII_increased_DiseaseSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-HP" - # testExamples: - # - qInput: "SNOMEDCT:2415007" ## Lumbosacral radiculopathy (disorder) - # oneOutput: "HP:0001369" ## Arthritis - DiseaseSNOMEDCT_increased_PhenoHP-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.UNII, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: UNII + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-UNII" + # testExamples: + # - qInput: "SNOMEDCT:237519003" ## Autoimmune hypothyroidism (disorder) + # oneOutput: "UNII:4T6H12BN9U" ## petrolatum + ChemUNII_increased_PhenoHP: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP + ## 1993 records + -supportBatch: true + useTemplating: true + inputs: + - id: UNII + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.UNII", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "UNII:K16AIQ8CTM" ## pertuzumab + # oneOutput: "HP:0005518" ## Increased mean corpuscular volume + ChemUNII_increased_PhenoHP_rev: + -supportBatch: true + useTemplating: true + inputs: - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: SNOMEDCT - semantic: Disease - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-SNOMEDCT" - # testExamples: - # - qInput: "HP:0002385" ## Paraparesis - # oneOutput: "SNOMEDCT:2415007" ## Lumbosacral radiculopathy (disorder) - ## no records for DiseaseSNOMEDCT_increased_PhenoNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT - ## no records for DiseaseSNOMEDCT_increased_PhenoSNOMEDCT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT - DiseaseMONDO_increased_ProcedureNCIT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.MONDO%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Procedure - ## 69 records - - supportBatch: true - useTemplating: true - inputs: - - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.UNII, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: UNII + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-UNII" + # testExamples: + # - qInput: "HP:0003124" ## Hypercholesterolemia + # oneOutput: "UNII:FU77B4U5Z0" ## ustekinumab + ChemUNII_increased_PhenoNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT + ## 139 records + -supportBatch: true + useTemplating: true + inputs: + - id: UNII + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.UNII", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "UNII:4F4X42SYQ6" ## rituximab + # oneOutput: "NCIT:C155871" ## Herpes Simplex Virus Infection + ChemUNII_increased_PhenoNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Procedure - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-NCIT" - # testExamples: - # - qInput: "MONDO:0005300" ## chronic kidney disease - # oneOutput: "NCIT:C15271" ## Liver Transplantation - DiseaseMONDO_increased_ProcedureNCIT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.UNII, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: UNII + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-UNII" + # testExamples: + # - qInput: "NCIT:C15271" ## Liver Transplantation + # oneOutput: "UNII:4Z63YK6E0E" ## daratumumab + ChemUNII_increased_PhenoSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT + ## 13 records + -supportBatch: true + useTemplating: true + inputs: + - id: UNII + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.UNII", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "UNII:73B0K5S26A" ## belimumab + # oneOutput: "SNOMEDCT:237519003" ## Autoimmune hypothyroidism (disorder) + ChemUNII_increased_PhenoSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.UNII, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: UNII + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-UNII" + # testExamples: + # - qInput: "SNOMEDCT:386033004" ## Neuropathy (disorder) + # oneOutput: "UNII:DPT0O3T46P" ## pembrolizumab + ChemUNII_increased_ProcedureNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure%20AND%20_exists_:object.NCIT + ## 9 records + -supportBatch: true + useTemplating: true + inputs: + - id: UNII + - semantic: ChemicalEntity + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["subject.UNII", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "UNII:DPT0O3T46P" ## pembrolizumab + # oneOutput: "NCIT:C146650" ## Clostridium difficile Positive + ChemUNII_increased_ProcedureNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Procedure - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-MONDO" - # testExamples: - # - qInput: "NCIT:C15271" ## Liver Transplantation - # oneOutput: "MONDO:0005155" ## cirrhosis of liver - ## no records for DiseaseNCIT_increased_ProcedureNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Procedure - ## no records for DiseaseSNOMEDCT_increased_ProcedureNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Procedure + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.UNII, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: UNII + semantic: ChemicalEntity + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-UNII" + # testExamples: + # - qInput: "NCIT:C171647" ## SARS Coronavirus 2 Positive + # oneOutput: "UNII:I16QD7X297" ## neomycin DiseaseMONDO_decreased_DiseaseMONDO: ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.MONDO%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO - ## 190 records - - supportBatch: true - useTemplating: true - inputs: - - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + ## 13640 records + -supportBatch: true + useTemplating: true + inputs: - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-MONDO" - # testExamples: - # - qInput: "MONDO:0005148" ## type 2 diabetes mellitus - # oneOutput: "MONDO:0005301" ## multiple sclerosis - DiseaseMONDO_decreased_DiseaseMONDO-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "MONDO:0005010" ## coronary artery disease + # oneOutput: "MONDO:0005626" ## epithelial neoplasm + DiseaseMONDO_decreased_DiseaseMONDO_rev: + -supportBatch: true + useTemplating: true + inputs: - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-MONDO" - # testExamples: - # - qInput: "MONDO:0002039" ## cognitive disorder - # oneOutput: "MONDO:0005178" ## osteoarthritis + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "MONDO:0005154" ## liver disease + # oneOutput: "MONDO:0005009" ## congestive heart failure DiseaseMONDO_decreased_DiseaseNCIT: ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.MONDO%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT - ## 1 record - - supportBatch: true - useTemplating: true - inputs: + ## 86 records + -supportBatch: true + useTemplating: true + inputs: - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: NCIT - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-NCIT" - # testExamples: - # - qInput: "MONDO:0004981" ## atrial fibrillation (disease) - # oneOutput: "NCIT:C116994" ## Lupus Anticoagulant Disorder - DiseaseMONDO_decreased_DiseaseNCIT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "MONDO:0004979" ## asthma + # oneOutput: "NCIT:C167118" ## Influenza A Virus Positive + DiseaseMONDO_decreased_DiseaseNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-MONDO" - # testExamples: - # - qInput: "NCIT:C116994" ## Lupus Anticoagulant Disorder - # oneOutput: "MONDO:0004981" ## atrial fibrillation (disease) + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "NCIT:C15271" ## Liver Transplantation + # oneOutput: "MONDO:0001150" ## hydrocephalus DiseaseMONDO_decreased_DiseaseSNOMEDCT: ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.MONDO%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT - ## 21 records - - supportBatch: true - useTemplating: true - inputs: - - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: SNOMEDCT - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" - # testExamples: - # - qInput: "MONDO:0005311" ## atherosclerosis - # oneOutput: "SNOMEDCT:386033004" ## Neuropathy (disorder) - DiseaseMONDO_decreased_DiseaseSNOMEDCT-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: SNOMEDCT - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-MONDO" - # testExamples: - # - qInput: "SNOMEDCT:2415007" ## Lumbosacral radiculopathy (disorder) - # oneOutput: "MONDO:0005108" ## viral infectious disease - ## no records for DiseaseNCIT_decreased_DiseaseMONDO - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO - ## no records for DiseaseNCIT_decreased_DiseaseNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT - ## no records for DiseaseNCIT_decreased_DiseaseSNOMEDCT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT - DiseaseSNOMEDCT_decreased_DiseaseMONDO: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO - ## 6 records - - supportBatch: true - useTemplating: true - inputs: - - id: SNOMEDCT - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-MONDO" - # testExamples: - # - qInput: "SNOMEDCT:239791005" ## Seropositive rheumatoid arthritis (disorder) - # oneOutput: "MONDO:0004670" ## lupus erythematosus - DiseaseSNOMEDCT_decreased_DiseaseMONDO-rev: - - supportBatch: true - useTemplating: true - inputs: + ## 1237 records + -supportBatch: true + useTemplating: true + inputs: - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "MONDO:0002959" ## radiculopathy + # oneOutput: "SNOMEDCT:127295002" ## Traumatic brain injury (disorder) + DiseaseMONDO_decreased_DiseaseSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: Disease - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-SNOMEDCT" - # testExamples: - # - qInput: "MONDO:0005546" ## fibromyalgia - # oneOutput: "SNOMEDCT:239791005" ## Seropositive rheumatoid arthritis (disorder) - ## no records for DiseaseSNOMEDCT_decreased_DiseaseNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT - ## no records for DiseaseSNOMEDCT_decreased_DiseaseSNOMEDCT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "SNOMEDCT:76571007" ## Septic shock (disorder) + # oneOutput: "MONDO:0005028" ## esophageal adenocarcinoma DiseaseMONDO_decreased_PhenoHP: ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.MONDO%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP - ## 426 records - - supportBatch: true - useTemplating: true - inputs: + ## 10101 records + -supportBatch: true + useTemplating: true + inputs: - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-HP" - # testExamples: - # - qInput: "MONDO:0005002" ## chronic obstructive pulmonary disease - # oneOutput: "HP:0033077" ## Increased circulating free T4 level - DiseaseMONDO_decreased_PhenoHP-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "MONDO:0005340" ## alopecia areata + # oneOutput: "HP:0003119" ## Abnormal circulating lipid concentration + DiseaseMONDO_decreased_PhenoHP_rev: + -supportBatch: true + useTemplating: true + inputs: - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-MONDO" - # testExamples: - # - qInput: "HP:0025066" ## Decreased mean corpuscular volume - # oneOutput: "MONDO:0005071" ## nervous system disorder + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "HP:0001945" ## Fever + # oneOutput: "MONDO:0005155" ## cirrhosis of liver DiseaseMONDO_decreased_PhenoNCIT: ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.MONDO%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT - ## 17 records - - supportBatch: true - useTemplating: true - inputs: + ## 1293 records + -supportBatch: true + useTemplating: true + inputs: - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: NCIT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-NCIT" - # testExamples: - # - qInput: "MONDO:0005148" ## type 2 diabetes mellitus - # oneOutput: "NCIT:C171647" ## SARS Coronavirus 2 Positive - DiseaseMONDO_decreased_PhenoNCIT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "MONDO:0005090" ## schizophrenia (disease) + # oneOutput: "NCIT:C3587" ## Chronic Lymphocytic Leukemia in Remission + DiseaseMONDO_decreased_PhenoNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-MONDO" - # testExamples: - # - qInput: "NCIT:C146650" ## Clostridium difficile Positive - # oneOutput: "MONDO:0005249" ## pneumonia - ## no records for DiseaseMONDO_decreased_PhenoSNOMEDCT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "NCIT:C146650" ## Clostridium difficile Positive + # oneOutput: "MONDO:0005180" ## Parkinson disease + DiseaseMONDO_decreased_PhenoSNOMEDCT: ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.MONDO%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT - ## no records for DiseaseNCIT_decreased_PhenoHP - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP - ## no records for DiseaseNCIT_decreased_PhenoNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT - ## no records for DiseaseNCIT_decreased_PhenoSNOMEDCT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT - DiseaseSNOMEDCT_decreased_PhenoHP: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP - ## 22 records - - supportBatch: true - useTemplating: true - inputs: - - id: SNOMEDCT - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-HP" - # testExamples: - # - qInput: "SNOMEDCT:76571007" ## Septic shock (disorder) - # oneOutput: "HP:0031963" ## Decreased serum anion gap - DiseaseSNOMEDCT_decreased_PhenoHP-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + ## 88 records + -supportBatch: true + useTemplating: true + inputs: + - id: MONDO + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "MONDO:0011849" ## psoriatic arthritis + # oneOutput: "SNOMEDCT:2415007" ## Lumbosacral radiculopathy (disorder) + DiseaseMONDO_decreased_PhenoSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: Disease - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-SNOMEDCT" - # testExamples: - # - qInput: "HP:0031969" ## Reduced blood urea nitrogen - # oneOutput: "SNOMEDCT:76571007" ## Septic shock (disorder) - ## no records for DiseaseSNOMEDCT_decreased_PhenoNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT - ## no records for DiseaseSNOMEDCT_decreased_PhenoSNOMEDCT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "SNOMEDCT:48440001" ## Arthritis due to gout (disorder) + # oneOutput: "MONDO:0005485" ## psychotic disorder DiseaseMONDO_decreased_ProcedureNCIT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.MONDO%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure - ## 1 record - - supportBatch: true - useTemplating: true - inputs: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.MONDO%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure%20AND%20_exists_:object.NCIT + ## 113 records + -supportBatch: true + useTemplating: true + inputs: - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "MONDO:0007028" ## rotator cuff syndrome + # oneOutput: "NCIT:C171647" ## SARS Coronavirus 2 Positive + DiseaseMONDO_decreased_ProcedureNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Procedure - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-NCIT" - # testExamples: - # - qInput: "MONDO:0006011" ## viral hepatitis - # oneOutput: "NCIT:C15271" ## Liver Transplantation - DiseaseMONDO_decreased_ProcedureNCIT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "NCIT:C167118" ## Influenza A Virus Positive + # oneOutput: "MONDO:0001942" ## generalized anxiety disorder + DiseaseMONDO_increased_DiseaseMONDO: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.MONDO%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO + ## 14415 records + -supportBatch: true + useTemplating: true + inputs: + - id: MONDO + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "MONDO:0004988" ## breast adenocarcinoma + # oneOutput: "MONDO:0004868" ## biliary tract disease + DiseaseMONDO_increased_DiseaseMONDO_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: MONDO + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "MONDO:0005011" ## Crohn disease + # oneOutput: "MONDO:0042981" ## aortic valve stenosis + DiseaseMONDO_increased_DiseaseNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.MONDO%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT + ## 96 records + -supportBatch: true + useTemplating: true + inputs: + - id: MONDO + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "MONDO:0006763" ## frozen shoulder + # oneOutput: "NCIT:C3586" ## Acute Lymphoblastic Leukemia in Remission + DiseaseMONDO_increased_DiseaseNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Procedure - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "NCIT:C146650" ## Clostridium difficile Positive + # oneOutput: "MONDO:0024317" ## chronic pain syndrome + DiseaseMONDO_increased_DiseaseSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.MONDO%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT + ## 1129 records + -supportBatch: true + useTemplating: true + inputs: - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-MONDO" - # testExamples: - # - qInput: "NCIT:C15271" ## Liver Transplantation - # oneOutput: "MONDO:0006011" ## viral hepatitis - ## no records for DiseaseNCIT_decreased_ProcedureNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure - ## no records for DiseaseSNOMEDCT_decreased_ProcedureNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure - PhenoHP_increased_DiseaseMONDO: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.HP%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO - ## 3536 records - - supportBatch: true - useTemplating: true - inputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "MONDO:0005344" ## hepatitis B virus infection + # oneOutput: "SNOMEDCT:191519005" ## Dementia associated with another disease (disorder) + DiseaseMONDO_increased_DiseaseSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "SNOMEDCT:54404000" ## Cervical radiculopathy (disorder) + # oneOutput: "MONDO:0005010" ## coronary artery disease + DiseaseMONDO_increased_PhenoHP: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.MONDO%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP + ## 9919 records + -supportBatch: true + useTemplating: true + inputs: + - id: MONDO + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "MONDO:0005068" ## myocardial infarction (disease) + # oneOutput: "HP:0002829" ## Arthralgia + DiseaseMONDO_increased_PhenoHP_rev: + -supportBatch: true + useTemplating: true + inputs: - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "HP:0001945" ## Fever + # oneOutput: "MONDO:0005230" ## cellulitis (disease) + DiseaseMONDO_increased_PhenoNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.MONDO%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT + ## 527 records + -supportBatch: true + useTemplating: true + inputs: - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-MONDO" - # testExamples: - # - qInput: "HP:0000093" ## Proteinuria - # oneOutput: "MONDO:0001627" ## dementia (disease) - PhenoHP_increased_DiseaseMONDO-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "MONDO:0005146" ## post-traumatic stress disorder + # oneOutput: "NCIT:C146650" ## Clostridium difficile Positive + DiseaseMONDO_increased_PhenoNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "NCIT:C146650" ## Clostridium difficile Positive + # oneOutput: "MONDO:0005011" ## Crohn disease + DiseaseMONDO_increased_PhenoSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.MONDO%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT + ## 94 records + -supportBatch: true + useTemplating: true + inputs: - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-HP" - # testExamples: - # - qInput: "MONDO:0001650" ## acute cystitis (disease) - # oneOutput: "HP:0000093" ## Proteinuria - PhenoHP_increased_DiseaseNCIT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.HP%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT - ## 4 records - - supportBatch: true - useTemplating: true - inputs: - - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "MONDO:0013600" ## insomnia (disease) + # oneOutput: "SNOMEDCT:76571007" ## Septic shock (disorder) + DiseaseMONDO_increased_PhenoSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "SNOMEDCT:127295002" ## Traumatic brain injury (disorder) + # oneOutput: "MONDO:0005300" ## chronic kidney disease + DiseaseMONDO_increased_ProcedureNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.MONDO%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure%20AND%20_exists_:object.NCIT + ## 69 records + -supportBatch: true + useTemplating: true + inputs: + - id: MONDO + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["subject.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "MONDO:0002959" ## radiculopathy + # oneOutput: "NCIT:C3586" ## Acute Lymphoblastic Leukemia in Remission + DiseaseMONDO_increased_ProcedureNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-NCIT" - # testExamples: - # - qInput: "HP:0003645" ## Prolonged partial thromboplastin time - # oneOutput: "NCIT:C116994" ## Lupus Anticoagulant Disorder - PhenoHP_increased_DiseaseNCIT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "NCIT:C167118" ## Influenza A Virus Positive + # oneOutput: "MONDO:0007488" ## Lewy body dementia + DiseaseNCIT_decreased_DiseaseMONDO: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO + ## 73 records + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-HP" - # testExamples: - # - qInput: "NCIT:C116994" ## Lupus Anticoagulant Disorder - # oneOutput: "HP:0100724" ## Hypercoagulability - PhenoHP_increased_DiseaseSNOMEDCT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.HP%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT - ## 253 records - - supportBatch: true - useTemplating: true - inputs: - - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: SNOMEDCT - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" - # testExamples: - # - qInput: "HP:0000870" ## Increased circulating prolactin concentration - # oneOutput: "SNOMEDCT:127295002" ## Traumatic brain injury (disorder) - PhenoHP_increased_DiseaseSNOMEDCT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "NCIT:C159516" ## Liver Lesion + # oneOutput: "MONDO:0004375" ## end stage renal failure + DiseaseNCIT_decreased_DiseaseMONDO_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: MONDO + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "MONDO:0013662" ## Barrett esophagus + # oneOutput: "NCIT:C171647" ## SARS Coronavirus 2 Positive + DiseaseNCIT_decreased_DiseaseSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT + ## 7 records + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "NCIT:C52007" ## Arthrodesis + # oneOutput: "SNOMEDCT:48440001" ## Arthritis due to gout (disorder) + DiseaseNCIT_decreased_DiseaseSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "SNOMEDCT:197352008" ## Toxic hepatitis (disorder) + # oneOutput: "NCIT:C155871" ## Herpes Simplex Virus Infection + DiseaseNCIT_decreased_PhenoHP: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP + ## 44 records + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "NCIT:C3588" ## Acute Myeloid Leukemia in Remission + # oneOutput: "HP:0002076" ## Migraine + DiseaseNCIT_decreased_PhenoHP_rev: + -supportBatch: true + useTemplating: true + inputs: - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-HP" - # testExamples: - # - qInput: "SNOMEDCT:709073001" ## Neurocognitive disorder (disorder) - # oneOutput: "HP:0000870" ## Increased circulating prolactin concentration - PhenoNCIT_increased_DiseaseMONDO: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO - ## 11 records - - supportBatch: true - useTemplating: true - inputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "HP:0003138" ## Increased blood urea nitrogen + # oneOutput: "NCIT:C146650" ## Clostridium difficile Positive + DiseaseNCIT_decreased_PhenoNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT + ## 9 records + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-MONDO" - # testExamples: - # - qInput: "NCIT:C159516" ## Liver Lesion - # oneOutput: "MONDO:0005154" ## liver disease - PhenoNCIT_increased_DiseaseMONDO-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C167118" ## Influenza A Virus Positive + # oneOutput: "NCIT:C159516" ## Liver Lesion + DiseaseNCIT_decreased_PhenoNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C155871" ## Herpes Simplex Virus Infection + # oneOutput: "NCIT:C51691" ## Arthroplasty + DiseaseNCIT_decreased_ProcedureNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure%20AND%20_exists_:object.NCIT + ## 1 records + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C50815" ## Aortic Valve Replacement + # oneOutput: "NCIT:C3586" ## Acute Lymphoblastic Leukemia in Remission + DiseaseNCIT_decreased_ProcedureNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C116994" ## Lupus Anticoagulant Disorder + # oneOutput: "NCIT:C50815" ## Aortic Valve Replacement + DiseaseNCIT_increased_DiseaseMONDO: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO + ## 82 records + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "NCIT:C52007" ## Arthrodesis + # oneOutput: "MONDO:0001824" ## polyneuropathy + DiseaseNCIT_increased_DiseaseMONDO_rev: + -supportBatch: true + useTemplating: true + inputs: - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "MONDO:0007256" ## hepatocellular carcinoma + # oneOutput: "NCIT:C50815" ## Aortic Valve Replacement + DiseaseNCIT_increased_DiseaseSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT + ## 6 records + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-NCIT" - # testExamples: - # - qInput: "MONDO:0004948" ## B-cell chronic lymphocytic leukemia - # oneOutput: "NCIT:C3587" ## Chronic Lymphocytic Leukemia in Remission - ## no records for PhenoNCIT_increased_DiseaseNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT - ## no records for PhenoNCIT_increased_DiseaseSNOMEDCT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT - PhenoSNOMEDCT_increased_DiseaseMONDO: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO - ## 27 records - - supportBatch: true - useTemplating: true - inputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "NCIT:C155871" ## Herpes Simplex Virus Infection + # oneOutput: "SNOMEDCT:127295002" ## Traumatic brain injury (disorder) + DiseaseNCIT_increased_DiseaseSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-MONDO" - # testExamples: - # - qInput: "SNOMEDCT:166816003" ## Serum lipids high (finding) - # oneOutput: "MONDO:0001356" ## iron deficiency anemia - PhenoSNOMEDCT_increased_DiseaseMONDO-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "SNOMEDCT:239791005" ## Seropositive rheumatoid arthritis (disorder) + # oneOutput: "NCIT:C15271" ## Liver Transplantation + DiseaseNCIT_increased_PhenoHP: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP + ## 66 records + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "NCIT:C50815" ## Aortic Valve Replacement + # oneOutput: "HP:0100806" ## Sepsis + DiseaseNCIT_increased_PhenoHP_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: HP + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "HP:0001974" ## Leukocytosis + # oneOutput: "NCIT:C15271" ## Liver Transplantation + DiseaseNCIT_increased_PhenoNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT + ## 1 records + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C171647" ## SARS Coronavirus 2 Positive + # oneOutput: "NCIT:C116994" ## Lupus Anticoagulant Disorder + DiseaseNCIT_increased_PhenoNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C141278" ## Adenovirus Positive + # oneOutput: "NCIT:C3588" ## Acute Myeloid Leukemia in Remission + DiseaseNCIT_increased_PhenoSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT + ## 1 records + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "NCIT:C38033" ## Arthroscopy + # oneOutput: "SNOMEDCT:237519003" ## Autoimmune hypothyroidism (disorder) + DiseaseNCIT_increased_PhenoSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-SNOMEDCT" - # testExamples: - # - qInput: "MONDO:0006920" ## prediabetes syndrome - # oneOutput: "SNOMEDCT:48440001" ## Arthritis due to gout (disorder) - ## no records for PhenoSNOMEDCT_increased_DiseaseNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT - PhenoSNOMEDCT_increased_DiseaseSNOMEDCT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT - ## 1 record - - supportBatch: true - useTemplating: true - inputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "SNOMEDCT:709073001" ## Neurocognitive disorder (disorder) + # oneOutput: "NCIT:C3587" ## Chronic Lymphocytic Leukemia in Remission + DiseaseSNOMEDCT_decreased_DiseaseMONDO: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO + ## 1318 records + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "SNOMEDCT:76571007" ## Septic shock (disorder) + # oneOutput: "MONDO:0020696" ## vitamin B12 deficiency + DiseaseSNOMEDCT_decreased_DiseaseMONDO_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: MONDO + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "MONDO:0020108" ## autoimmune hemolytic anemia + # oneOutput: "SNOMEDCT:711150003" ## Long-term current use of anticoagulant (situation) + DiseaseSNOMEDCT_decreased_DiseaseNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT + ## 10 records + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" - # testExamples: - # - qInput: "SNOMEDCT:166816003" ## Serum lipids high (finding) - # oneOutput: "SNOMEDCT:191519005" ## Dementia associated with another disease (disorder) - PhenoSNOMEDCT_increased_DiseaseSNOMEDCT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "SNOMEDCT:48440001" ## Arthritis due to gout (disorder) + # oneOutput: "NCIT:C171647" ## SARS Coronavirus 2 Positive + DiseaseSNOMEDCT_decreased_DiseaseNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "NCIT:C167118" ## Influenza A Virus Positive + # oneOutput: "SNOMEDCT:386033004" ## Neuropathy (disorder) + DiseaseSNOMEDCT_decreased_DiseaseSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT + ## 101 records + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "SNOMEDCT:191519005" ## Dementia associated with another disease (disorder) + # oneOutput: "SNOMEDCT:239791005" ## Seropositive rheumatoid arthritis (disorder) + DiseaseSNOMEDCT_decreased_DiseaseSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-SNOMEDCT" - # testExamples: - # - qInput: "SNOMEDCT:191519005" ## Dementia associated with another disease (disorder) - # oneOutput: "SNOMEDCT:166816003" ## Serum lipids high (finding) - PhenoHP_increased_PhenoHP: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.HP%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP - ## 5487 records - - supportBatch: true - useTemplating: true - inputs: - - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-HP" - # testExamples: - # - qInput: "HP:0000093" ## Proteinuria - # oneOutput: "HP:0003155" ## Elevated alkaline phosphatase - PhenoHP_increased_PhenoHP-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-HP" - # testExamples: - # - qInput: "HP:0003138" ## Increased blood urea nitrogen - # oneOutput: "HP:0000093" ## Proteinuria - PhenoHP_increased_PhenoNCIT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.HP%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT - ## 244 records - - supportBatch: true - useTemplating: true - inputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "SNOMEDCT:237519003" ## Autoimmune hypothyroidism (disorder) + # oneOutput: "SNOMEDCT:201839001" ## Primary coxarthrosis, bilateral (disorder) + DiseaseSNOMEDCT_decreased_PhenoHP: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP + ## 957 records + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "SNOMEDCT:711150003" ## Long-term current use of anticoagulant (situation) + # oneOutput: "HP:0000870" ## Increased circulating prolactin concentration + DiseaseSNOMEDCT_decreased_PhenoHP_rev: + -supportBatch: true + useTemplating: true + inputs: - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: NCIT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-NCIT" - # testExamples: - # - qInput: "HP:0000988" ## Skin rash - # oneOutput: "NCIT:C155871" ## Herpes Simplex Virus Infection - PhenoHP_increased_PhenoNCIT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "HP:0003282" ## Low alkaline phosphatase + # oneOutput: "SNOMEDCT:47049007" ## Ankylosis of spine (disorder) + DiseaseSNOMEDCT_decreased_PhenoNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT + ## 116 records + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "SNOMEDCT:2415007" ## Lumbosacral radiculopathy (disorder) + # oneOutput: "NCIT:C141278" ## Adenovirus Positive + DiseaseSNOMEDCT_decreased_PhenoNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-HP" - # testExamples: - # - qInput: "NCIT:C159516" ## Liver Lesion - # oneOutput: "HP:0000870" ## Increased circulating prolactin concentration - PhenoHP_increased_PhenoSNOMEDCT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.HP%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT - ## 19 records - - supportBatch: true - useTemplating: true - inputs: - - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "NCIT:C15271" ## Liver Transplantation + # oneOutput: "SNOMEDCT:386033004" ## Neuropathy (disorder) + DiseaseSNOMEDCT_decreased_PhenoSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT + ## 8 records + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" - # testExamples: - # - qInput: "HP:0001369" ## Arthritis - # oneOutput: "SNOMEDCT:48440001" ## Arthritis due to gout (disorder) - PhenoHP_increased_PhenoSNOMEDCT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "SNOMEDCT:239791005" ## Seropositive rheumatoid arthritis (disorder) + # oneOutput: "SNOMEDCT:197352008" ## Toxic hepatitis (disorder) + DiseaseSNOMEDCT_decreased_PhenoSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-HP" - # testExamples: - # - qInput: "SNOMEDCT:48440001" ## Arthritis due to gout (disorder) - # oneOutput: "HP:0011227" ## Elevated C-reactive protein level - PhenoNCIT_increased_PhenoHP: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP - ## 15 records - - supportBatch: true - useTemplating: true - inputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "SNOMEDCT:711150003" ## Long-term current use of anticoagulant (situation) + # oneOutput: "SNOMEDCT:201839001" ## Primary coxarthrosis, bilateral (disorder) + DiseaseSNOMEDCT_decreased_ProcedureNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure%20AND%20_exists_:object.NCIT + ## 13 records + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "SNOMEDCT:76571007" ## Septic shock (disorder) + # oneOutput: "NCIT:C171647" ## SARS Coronavirus 2 Positive + DiseaseSNOMEDCT_decreased_ProcedureNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-HP" - # testExamples: - # - qInput: "NCIT:C171647" ## SARS Coronavirus 2 Positive - # oneOutput: "HP:0003326" ## Myalgia - PhenoNCIT_increased_PhenoHP-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_decreased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "NCIT:C155871" ## Herpes Simplex Virus Infection + # oneOutput: "SNOMEDCT:48440001" ## Arthritis due to gout (disorder) + DiseaseSNOMEDCT_increased_DiseaseMONDO: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO + ## 1007 records + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "SNOMEDCT:191519005" ## Dementia associated with another disease (disorder) + # oneOutput: "MONDO:0007147" ## obstructive sleep apnea syndrome + DiseaseSNOMEDCT_increased_DiseaseMONDO_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: MONDO + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "MONDO:0005298" ## osteoporosis + # oneOutput: "SNOMEDCT:202805003" ## Sacroiliac disorder (disorder) + DiseaseSNOMEDCT_increased_DiseaseNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT + ## 5 records + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "SNOMEDCT:709073001" ## Neurocognitive disorder (disorder) + # oneOutput: "NCIT:C159516" ## Liver Lesion + DiseaseSNOMEDCT_increased_DiseaseNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-NCIT" - # testExamples: - # - qInput: "HP:0001397" ## Hepatic steatosis - # oneOutput: "NCIT:C159516" ## Liver Lesion - ## no records for PhenoNCIT_increased_PhenoNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT - ## no records for PhenoNCIT_increased_PhenoSNOMEDCT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT - PhenoSNOMEDCT_increased_PhenoHP: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP - ## 15 records - - supportBatch: true - useTemplating: true - inputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "NCIT:C3588" ## Acute Myeloid Leukemia in Remission + # oneOutput: "SNOMEDCT:386033004" ## Neuropathy (disorder) + DiseaseSNOMEDCT_increased_DiseaseSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT + ## 81 records + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-HP" - # testExamples: - # - qInput: "SNOMEDCT:166816003" ## Serum lipids high (finding) - # oneOutput: "HP:0000964" ## Eczema - PhenoSNOMEDCT_increased_PhenoHP-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "SNOMEDCT:127295002" ## Traumatic brain injury (disorder) + # oneOutput: "SNOMEDCT:711150003" ## Long-term current use of anticoagulant (situation) + DiseaseSNOMEDCT_increased_DiseaseSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-SNOMEDCT" - # testExamples: - # - qInput: "HP:0002617" ## Vascular dilatation - # oneOutput: "SNOMEDCT:166816003" ## Serum lipids high (finding) - ## no records for PhenoSNOMEDCT_increased_PhenoNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT - ## no records for PhenoSNOMEDCT_increased_PhenoSNOMEDCT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT - PhenoHP_increased_ProcedureNCIT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.HP%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Procedure - ## 15 records - - supportBatch: true - useTemplating: true - inputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "SNOMEDCT:54404000" ## Cervical radiculopathy (disorder) + # oneOutput: "SNOMEDCT:239792003" ## Seronegative rheumatoid arthritis (disorder) + DiseaseSNOMEDCT_increased_PhenoHP: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP + ## 693 records + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "SNOMEDCT:201839001" ## Primary coxarthrosis, bilateral (disorder) + # oneOutput: "HP:0006775" ## Multiple myeloma + DiseaseSNOMEDCT_increased_PhenoHP_rev: + -supportBatch: true + useTemplating: true + inputs: - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "HP:0000787" ## Nephrolithiasis + # oneOutput: "SNOMEDCT:76571007" ## Septic shock (disorder) + DiseaseSNOMEDCT_increased_PhenoNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT + ## 34 records + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "SNOMEDCT:66944004" ## Autoimmune thyroiditis (disorder) + # oneOutput: "NCIT:C141278" ## Adenovirus Positive + DiseaseSNOMEDCT_increased_PhenoNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Procedure - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-NCIT" - # testExamples: - # - qInput: "HP:0001882" ## Leukopenia - # oneOutput: "NCIT:C15271" ## Liver Transplantation - PhenoHP_increased_ProcedureNCIT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "NCIT:C167118" ## Influenza A Virus Positive + # oneOutput: "SNOMEDCT:201839001" ## Primary coxarthrosis, bilateral (disorder) + DiseaseSNOMEDCT_increased_PhenoSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT + ## 7 records + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "SNOMEDCT:197352008" ## Toxic hepatitis (disorder) + # oneOutput: "SNOMEDCT:54404000" ## Cervical radiculopathy (disorder) + DiseaseSNOMEDCT_increased_PhenoSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "SNOMEDCT:127295002" ## Traumatic brain injury (disorder) + # oneOutput: "SNOMEDCT:197352008" ## Toxic hepatitis (disorder) + DiseaseSNOMEDCT_increased_ProcedureNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Disease%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure%20AND%20_exists_:object.NCIT + ## 2 records + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "SNOMEDCT:201839001" ## Primary coxarthrosis, bilateral (disorder) + # oneOutput: "NCIT:C3587" ## Chronic Lymphocytic Leukemia in Remission + DiseaseSNOMEDCT_increased_ProcedureNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Procedure - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-HP" - # testExamples: - # - qInput: "NCIT:C15271" ## Liver Transplantation - # oneOutput: "HP:0012213" ## Decreased glomerular filtration rate - ## no records for PhenoNCIT_increased_ProcedureNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Procedure - ## no records for PhenoSNOMEDCT_increased_ProcedureNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Procedure + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Disease", "associated_with_increased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "NCIT:C3586" ## Acute Lymphoblastic Leukemia in Remission + # oneOutput: "SNOMEDCT:197354009" ## Toxic liver disease (disorder) PhenoHP_decreased_DiseaseMONDO: ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.HP%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO - ## 4025 records - - supportBatch: true - useTemplating: true - inputs: + ## 18759 records + -supportBatch: true + useTemplating: true + inputs: - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "HP:0000870" ## Increased circulating prolactin concentration + # oneOutput: "MONDO:0007275" ## carpal tunnel syndrome + PhenoHP_decreased_DiseaseMONDO_rev: + -supportBatch: true + useTemplating: true + inputs: - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-MONDO" - # testExamples: - # - qInput: "HP:0000093" ## Proteinuria - # oneOutput: "MONDO:0002253" ## spondylosis - PhenoHP_decreased_DiseaseMONDO-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-HP" - # testExamples: - # - qInput: "MONDO:0002050" ## depressive disorder - # oneOutput: "HP:0000093" ## Proteinuria + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "MONDO:0005130" ## celiac disease + # oneOutput: "HP:0002900" ## Hypokalemia PhenoHP_decreased_DiseaseNCIT: ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.HP%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT - ## 1 record - - supportBatch: true - useTemplating: true - inputs: + ## 113 records + -supportBatch: true + useTemplating: true + inputs: - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "HP:0025435" ## Increased lactate dehydrogenase level + # oneOutput: "NCIT:C3586" ## Acute Lymphoblastic Leukemia in Remission + PhenoHP_decreased_DiseaseNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-NCIT" - # testExamples: - # - qInput: "HP:0011991" ## Abnormal neutrophil count - # oneOutput: "NCIT:C116994" ## Lupus Anticoagulant Disorder - PhenoHP_decreased_DiseaseNCIT-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: NCIT - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-HP" - # testExamples: - # - qInput: "NCIT:C116994" ## Lupus Anticoagulant Disorder - # oneOutput: "HP:0011991" ## Abnormal neutrophil count + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "NCIT:C159516" ## Liver Lesion + # oneOutput: "HP:0032237" ## Increased circulating myelocyte count PhenoHP_decreased_DiseaseSNOMEDCT: ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.HP%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT - ## 291 records - - supportBatch: true - useTemplating: true - inputs: + ## 1532 records + -supportBatch: true + useTemplating: true + inputs: - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "HP:0012531" ## Pain + # oneOutput: "SNOMEDCT:54404000" ## Cervical radiculopathy (disorder) + PhenoHP_decreased_DiseaseSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" - # testExamples: - # - qInput: "HP:0000870" ## Increased circulating prolactin concentration - # oneOutput: "SNOMEDCT:54404000" ## Cervical radiculopathy (disorder) - PhenoHP_decreased_DiseaseSNOMEDCT-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: SNOMEDCT - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "SNOMEDCT:239791005" ## Seropositive rheumatoid arthritis (disorder) + # oneOutput: "HP:0011877" ## Increased mean platelet volume + PhenoHP_decreased_PhenoHP: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.HP%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP + ## 11425 records + -supportBatch: true + useTemplating: true + inputs: - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-HP" - # testExamples: - # - qInput: "SNOMEDCT:76571007" ## Septic shock (disorder) - # oneOutput: "HP:0000790" ## Hematuria - PhenoNCIT_decreased_DiseaseMONDO: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO - ## 43 records - - supportBatch: true - useTemplating: true - inputs: - - id: NCIT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-MONDO" - # testExamples: - # - qInput: "NCIT:C171647" ## SARS Coronavirus 2 Positive - # oneOutput: "MONDO:0001711" ## hepatic encephalopathy - PhenoNCIT_decreased_DiseaseMONDO-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: NCIT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-NCIT" - # testExamples: - # - qInput: "MONDO:0005247" ## urinary tract infection (disease) - # oneOutput: "NCIT:C171647" ## SARS Coronavirus 2 Positive - ## no records for PhenoNCIT_decreased_DiseaseNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT - PhenoNCIT_decreased_DiseaseSNOMEDCT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT - ## 3 records - - supportBatch: true - useTemplating: true - inputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "HP:0012418" ## Hypoxemia + # oneOutput: "HP:0002919" ## Ketonuria + PhenoHP_decreased_PhenoHP_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: HP + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "HP:0012343" ## Decreased circulating ferritin concentration + # oneOutput: "HP:0003077" ## Hyperlipidemia + PhenoHP_decreased_PhenoNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.HP%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT + ## 1257 records + -supportBatch: true + useTemplating: true + inputs: + - id: HP + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "HP:0011227" ## Elevated C-reactive protein level + # oneOutput: "NCIT:C3588" ## Acute Myeloid Leukemia in Remission + PhenoHP_decreased_PhenoNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: SNOMEDCT - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" - # testExamples: - # - qInput: "NCIT:C171647" ## SARS Coronavirus 2 Positive - # oneOutput: "SNOMEDCT:2415007" ## Lumbosacral radiculopathy (disorder) - PhenoNCIT_decreased_DiseaseSNOMEDCT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "NCIT:C3587" ## Chronic Lymphocytic Leukemia in Remission + # oneOutput: "HP:0031851" ## Reduced hematocrit + PhenoHP_decreased_PhenoSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.HP%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT + ## 121 records + -supportBatch: true + useTemplating: true + inputs: + - id: HP + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "HP:0012378" ## Fatigue + # oneOutput: "SNOMEDCT:54404000" ## Cervical radiculopathy (disorder) + PhenoHP_decreased_PhenoSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "SNOMEDCT:48440001" ## Arthritis due to gout (disorder) + # oneOutput: "HP:0000023" ## Inguinal hernia + PhenoHP_decreased_ProcedureNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.HP%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure%20AND%20_exists_:object.NCIT + ## 132 records + -supportBatch: true + useTemplating: true + inputs: + - id: HP + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "HP:0001899" ## Increased hematocrit + # oneOutput: "NCIT:C116994" ## Lupus Anticoagulant Disorder + PhenoHP_decreased_ProcedureNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-NCIT" - # testExamples: - # - qInput: "SNOMEDCT:76571007" ## Septic shock (disorder) - # oneOutput: "NCIT:C171647" ## SARS Coronavirus 2 Positive - PhenoSNOMEDCT_decreased_DiseaseMONDO: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO - ## 17 records - - supportBatch: true - useTemplating: true - inputs: - - id: SNOMEDCT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-MONDO" - # testExamples: - # - qInput: "SNOMEDCT:166816003" ## Serum lipids high (finding) - # oneOutput: "MONDO:0006920" ## prediabetes syndrome - PhenoSNOMEDCT_decreased_DiseaseMONDO-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "NCIT:C167118" ## Influenza A Virus Positive + # oneOutput: "HP:0001297" ## Stroke + PhenoHP_increased_DiseaseMONDO: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.HP%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO + ## 12086 records + -supportBatch: true + useTemplating: true + inputs: + - id: HP + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "HP:0002318" ## Cervical myelopathy + # oneOutput: "MONDO:0002471" ## bursitis + PhenoHP_increased_DiseaseMONDO_rev: + -supportBatch: true + useTemplating: true + inputs: - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: SNOMEDCT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-SNOMEDCT" - # testExamples: - # - qInput: "MONDO:0005391" ## restless legs syndrome - # oneOutput: "SNOMEDCT:166816003" ## Serum lipids high (finding) - ## no records for PhenoSNOMEDCT_decreased_DiseaseNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT - PhenoSNOMEDCT_decreased_DiseaseSNOMEDCT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT - ## 1 record - - supportBatch: true - useTemplating: true - inputs: - - id: SNOMEDCT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: SNOMEDCT - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" - # testExamples: - # - qInput: "SNOMEDCT:166816003" ## Serum lipids high (finding) - # oneOutput: "SNOMEDCT:386033004" ## Neuropathy (disorder) - PhenoSNOMEDCT_decreased_DiseaseSNOMEDCT-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: SNOMEDCT - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: SNOMEDCT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-SNOMEDCT" - # testExamples: - # - qInput: "SNOMEDCT:386033004" ## Neuropathy (disorder) - # oneOutput: "SNOMEDCT:166816003" ## Serum lipids high (finding) - PhenoHP_decreased_PhenoHP: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.HP%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP - ## 3804 records - - supportBatch: true - useTemplating: true - inputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "MONDO:0007743" ## attention deficit-hyperactivity disorder + # oneOutput: "HP:0031807" ## Increased basophil count + PhenoHP_increased_DiseaseNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.HP%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT + ## 86 records + -supportBatch: true + useTemplating: true + inputs: - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "HP:0001894" ## Thrombocytosis + # oneOutput: "NCIT:C3588" ## Acute Myeloid Leukemia in Remission + PhenoHP_increased_DiseaseNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "NCIT:C167118" ## Influenza A Virus Positive + # oneOutput: "HP:0012101" ## Decreased serum creatinine + PhenoHP_increased_DiseaseSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.HP%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT + ## 1055 records + -supportBatch: true + useTemplating: true + inputs: - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-HP" - # testExamples: - # - qInput: "HP:0000093" ## Proteinuria - # oneOutput: "HP:0001649" ## Tachycardia - PhenoHP_decreased_PhenoHP-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "HP:0003259" ## Elevated serum creatinine + # oneOutput: "SNOMEDCT:711150003" ## Long-term current use of anticoagulant (situation) + PhenoHP_increased_DiseaseSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "SNOMEDCT:191519005" ## Dementia associated with another disease (disorder) + # oneOutput: "HP:0031956" ## Elevated serum aspartate aminotransferase + PhenoHP_increased_PhenoHP: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.HP%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP + ## 10355 records + -supportBatch: true + useTemplating: true + inputs: - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "HP:0002014" ## Diarrhea + # oneOutput: "HP:0001899" ## Increased hematocrit + PhenoHP_increased_PhenoHP_rev: + -supportBatch: true + useTemplating: true + inputs: - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-HP" - # testExamples: - # - qInput: "HP:0001386" ## Joint swelling - # oneOutput: "HP:0000093" ## Proteinuria - PhenoHP_decreased_PhenoNCIT: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "HP:0001882" ## Leukopenia + # oneOutput: "HP:0032372" ## Increased peripheral blast count + PhenoHP_increased_PhenoNCIT: ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.HP%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT - ## 170 records - - supportBatch: true - useTemplating: true - inputs: + ## 733 records + -supportBatch: true + useTemplating: true + inputs: - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "HP:0100512" ## Low levels of vitamin D + # oneOutput: "NCIT:C167118" ## Influenza A Virus Positive + PhenoHP_increased_PhenoNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-NCIT" - # testExamples: - # - qInput: "HP:0012085" ## Pyuria - # oneOutput: "NCIT:C167118" ## Influenza B Virus Positive - PhenoHP_decreased_PhenoNCIT-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: NCIT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-HP" - # testExamples: - # - qInput: "NCIT:C146650" ## Clostridium difficile Positive - # oneOutput: "HP:0012085" ## Pyuria - PhenoHP_decreased_PhenoSNOMEDCT: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "NCIT:C167118" ## Influenza A Virus Positive + # oneOutput: "HP:0002905" ## Hyperphosphatemia + PhenoHP_increased_PhenoSNOMEDCT: ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.HP%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT - ## 26 records - - supportBatch: true - useTemplating: true - inputs: + ## 78 records + -supportBatch: true + useTemplating: true + inputs: - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: SNOMEDCT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" - # testExamples: - # - qInput: "HP:0011423" ## Hyperchloremia - # oneOutput: "SNOMEDCT:48440001" ## Arthritis due to gout (disorder) - PhenoHP_decreased_PhenoSNOMEDCT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "HP:0001894" ## Thrombocytosis + # oneOutput: "SNOMEDCT:239791005" ## Seropositive rheumatoid arthritis (disorder) + PhenoHP_increased_PhenoSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "SNOMEDCT:386033004" ## Neuropathy (disorder) + # oneOutput: "HP:0002923" ## Rheumatoid factor positive + PhenoHP_increased_ProcedureNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.HP%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure%20AND%20_exists_:object.NCIT + ## 67 records + -supportBatch: true + useTemplating: true + inputs: - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-HP" - # testExamples: - # - qInput: "SNOMEDCT:48440001" ## Arthritis due to gout (disorder) - # oneOutput: "HP:0002902" ## Hyponatremia + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "HP:0011016" ## Abnormality of urine glucose concentration + # oneOutput: "NCIT:C3586" ## Acute Lymphoblastic Leukemia in Remission + PhenoHP_increased_ProcedureNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "NCIT:C146650" ## Clostridium difficile Positive + # oneOutput: "HP:0032473" ## Decreased urine urobilinogen + PhenoNCIT_decreased_DiseaseMONDO: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO + ## 1170 records + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "NCIT:C159516" ## Liver Lesion + # oneOutput: "MONDO:0005100" ## systemic sclerosis + PhenoNCIT_decreased_DiseaseMONDO_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: MONDO + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "MONDO:0017276" ## frontotemporal dementia + # oneOutput: "NCIT:C146650" ## Clostridium difficile Positive + PhenoNCIT_decreased_DiseaseNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT + ## 7 records + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C15546" ## Breast Cancer Screening + # oneOutput: "NCIT:C3586" ## Acute Lymphoblastic Leukemia in Remission + PhenoNCIT_decreased_DiseaseNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C159516" ## Liver Lesion + # oneOutput: "NCIT:C15546" ## Breast Cancer Screening + PhenoNCIT_decreased_DiseaseSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT + ## 94 records + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "NCIT:C146650" ## Clostridium difficile Positive + # oneOutput: "SNOMEDCT:54404000" ## Cervical radiculopathy (disorder) + PhenoNCIT_decreased_DiseaseSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "SNOMEDCT:48440001" ## Arthritis due to gout (disorder) + # oneOutput: "NCIT:C15546" ## Breast Cancer Screening PhenoNCIT_decreased_PhenoHP: ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP - ## 64 records - - supportBatch: true - useTemplating: true - inputs: + ## 705 records + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-HP" - # testExamples: - # - qInput: "NCIT:C171647" ## SARS Coronavirus 2 Positive - # oneOutput: "HP:0002919" ## Ketonuria - PhenoNCIT_decreased_PhenoHP-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "NCIT:C141278" ## Adenovirus Positive + # oneOutput: "HP:0033077" ## Increased circulating free T4 level + PhenoNCIT_decreased_PhenoHP_rev: + -supportBatch: true + useTemplating: true + inputs: - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: NCIT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-NCIT" - # testExamples: - # - qInput: "HP:0002829" ## Arthralgia - # oneOutput: "NCIT:C171647" ## SARS Coronavirus 2 Positive + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "HP:0031507" ## Decreased circulating T4 level + # oneOutput: "NCIT:C51691" ## Arthroplasty PhenoNCIT_decreased_PhenoNCIT: ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT - ## 1 record - - supportBatch: true - useTemplating: true - inputs: - - id: NCIT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + ## 56 records + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-NCIT" - # testExamples: - # - qInput: "NCIT:C171647" ## SARS Coronavirus 2 Positive - # oneOutput: "NCIT:C167118" ## Influenza B Virus Positive - PhenoNCIT_decreased_PhenoNCIT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C51691" ## Arthroplasty + # oneOutput: "NCIT:C155871" ## Herpes Simplex Virus Infection + PhenoNCIT_decreased_PhenoNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: NCIT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-NCIT" - # testExamples: - # - qInput: "NCIT:C167118" ## Influenza B Virus Positive - # oneOutput: "NCIT:C171647" ## SARS Coronavirus 2 Positive - ## no records for PhenoNCIT_decreased_PhenoSNOMEDCT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C141278" ## Adenovirus Positive + # oneOutput: "NCIT:C159516" ## Liver Lesion + PhenoNCIT_decreased_PhenoSNOMEDCT: ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT - PhenoSNOMEDCT_decreased_PhenoHP: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP - ## 16 records - - supportBatch: true - useTemplating: true - inputs: - - id: SNOMEDCT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-HP" - # testExamples: - # - qInput: "SNOMEDCT:166816003" ## Serum lipids high (finding) - # oneOutput: "HP:0031098" ## Decreased thyroid-stimulating hormone level - PhenoSNOMEDCT_decreased_PhenoHP-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + ## 9 records + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "NCIT:C116994" ## Lupus Anticoagulant Disorder + # oneOutput: "SNOMEDCT:239792003" ## Seronegative rheumatoid arthritis (disorder) + PhenoNCIT_decreased_PhenoSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-SNOMEDCT" - # testExamples: - # - qInput: "HP:0001882" ## Leukopenia - # oneOutput: "SNOMEDCT:166816003" ## Serum lipids high (finding) - ## no records for PhenoSNOMEDCT_decreased_PhenoNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT - ## no records for PhenoSNOMEDCT_decreased_PhenoSNOMEDCT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT - PhenoHP_decreased_ProcedureNCIT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.HP%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure - ## 6 records - - supportBatch: true - useTemplating: true - inputs: - - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "SNOMEDCT:237519003" ## Autoimmune hypothyroidism (disorder) + # oneOutput: "NCIT:C3586" ## Acute Lymphoblastic Leukemia in Remission + PhenoNCIT_decreased_ProcedureNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure%20AND%20_exists_:object.NCIT + ## 7 records + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Procedure - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-NCIT" - # testExamples: - # - qInput: "HP:0003141" ## Increased LDL cholesterol concentration - # oneOutput: "NCIT:C15271" ## Liver Transplantation - PhenoHP_decreased_ProcedureNCIT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C52007" ## Arthrodesis + # oneOutput: "NCIT:C146650" ## Clostridium difficile Positive + PhenoNCIT_decreased_ProcedureNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Procedure - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-HP" - # testExamples: - # - qInput: "NCIT:C15271" ## Liver Transplantation - # oneOutput: "HP:0031965" ## Increased RBC distribution width - ## no records for PhenoNCIT_decreased_ProcedureNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure - ## no records for PhenoSNOMEDCT_decreased_ProcedureNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure - ChemCHEBI_increased_DiseaseMONDO: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO - ## 4590 records - - supportBatch: true - useTemplating: true - inputs: - - id: CHEBI - semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-MONDO" - # testExamples: - # - qInput: "CHEBI:100241" ## ciprofloxacin - # oneOutput: "MONDO:0005230" ## cellulitis (disease) - ChemCHEBI_increased_DiseaseMONDO-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C3587" ## Chronic Lymphocytic Leukemia in Remission + # oneOutput: "NCIT:C146650" ## Clostridium difficile Positive + PhenoNCIT_increased_DiseaseMONDO: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO + ## 380 records + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "NCIT:C116994" ## Lupus Anticoagulant Disorder + # oneOutput: "MONDO:0007488" ## Lewy body dementia + PhenoNCIT_increased_DiseaseMONDO_rev: + -supportBatch: true + useTemplating: true + inputs: - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.CHEBI, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: CHEBI - semantic: SmallMolecule - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-CHEBI" - # testExamples: - # - qInput: "MONDO:0005101" ## ulcerative colitis (disease) - # oneOutput: "CHEBI:100241" ## ciprofloxacin - ChemCHEBI_increased_DiseaseNCIT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT - ## 2 records - - supportBatch: true - useTemplating: true - inputs: - - id: CHEBI - semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "MONDO:0004979" ## asthma + # oneOutput: "NCIT:C146650" ## Clostridium difficile Positive + PhenoNCIT_increased_DiseaseNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT + ## 3 records + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-NCIT" - # testExamples: - # - qInput: "CHEBI:5801" ## hydroxychloroquine - # oneOutput: "NCIT:C116994" ## Lupus Anticoagulant Disorder - ChemCHEBI_increased_DiseaseNCIT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C3587" ## Chronic Lymphocytic Leukemia in Remission + # oneOutput: "NCIT:C15271" ## Liver Transplantation + PhenoNCIT_increased_DiseaseNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.CHEBI, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: CHEBI - semantic: SmallMolecule - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-CHEBI" - # testExamples: - # - qInput: "NCIT:C116994" ## Lupus Anticoagulant Disorder - # oneOutput: "CHEBI:87732" ## warfarin - ChemCHEBI_increased_DiseaseSNOMEDCT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT - ## 282 records - - supportBatch: true - useTemplating: true - inputs: - - id: CHEBI - semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: SNOMEDCT - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" - # testExamples: - # - qInput: "CHEBI:15409" ## menthol - # oneOutput: "SNOMEDCT:709073001" ## Neurocognitive disorder (disorder) - ChemCHEBI_increased_DiseaseSNOMEDCT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C15271" ## Liver Transplantation + # oneOutput: "NCIT:C167118" ## Influenza A Virus Positive + PhenoNCIT_increased_DiseaseSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT + ## 36 records + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "NCIT:C51691" ## Arthroplasty + # oneOutput: "SNOMEDCT:197352008" ## Toxic hepatitis (disorder) + PhenoNCIT_increased_DiseaseSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.CHEBI, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: CHEBI - semantic: SmallMolecule - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-CHEBI" - # testExamples: - # - qInput: "SNOMEDCT:76571007" ## Septic shock (disorder) - # oneOutput: "CHEBI:15407" ## ephedrine - ChemUNII_increased_DiseaseMONDO: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO - ## 401 records - - supportBatch: true - useTemplating: true - inputs: - - id: UNII - semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.UNII", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-MONDO" - # testExamples: - # - qInput: "UNII:1BJ477IO2L" ## gadobutrol - # oneOutput: "MONDO:0005804" ## hyperprolactinemia (disease) - ChemUNII_increased_DiseaseMONDO-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.UNII, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: UNII - semantic: SmallMolecule - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-UNII" - # testExamples: - # - qInput: "MONDO:0005665" ## Bell's palsy - # oneOutput: "UNII:1BJ477IO2L" ## gadobutrol - ChemUNII_increased_DiseaseNCIT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT - ## 1 record - - supportBatch: true - useTemplating: true - inputs: - - id: UNII - semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.UNII", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "SNOMEDCT:239791005" ## Seropositive rheumatoid arthritis (disorder) + # oneOutput: "NCIT:C116994" ## Lupus Anticoagulant Disorder + PhenoNCIT_increased_PhenoHP: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP + ## 395 records + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-NCIT" - # testExamples: - # - qInput: "UNII:E47C0NF7LV" ## enoxaparin - # oneOutput: "NCIT:C116994" ## Lupus Anticoagulant Disorder - ChemUNII_increased_DiseaseNCIT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "NCIT:C159516" ## Liver Lesion + # oneOutput: "HP:0025066" ## Decreased mean corpuscular volume + PhenoNCIT_increased_PhenoHP_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: HP + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "HP:0001297" ## Stroke + # oneOutput: "NCIT:C167118" ## Influenza A Virus Positive + PhenoNCIT_increased_PhenoNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT + ## 34 records + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.UNII, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: UNII - semantic: SmallMolecule - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-UNII" - # testExamples: - # - qInput: "NCIT:C116994" ## Lupus Anticoagulant Disorder - # oneOutput: "UNII:E47C0NF7LV" ## enoxaparin - ChemUNII_increased_DiseaseSNOMEDCT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT - ## 30 records - - supportBatch: true - useTemplating: true - inputs: - - id: UNII - semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.UNII", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: SNOMEDCT - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" - # testExamples: - # - qInput: "UNII:T2410KM04A" ## heparin - # oneOutput: "SNOMEDCT:127295002" ## Traumatic brain injury (disorder) - ChemUNII_increased_DiseaseSNOMEDCT-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: SNOMEDCT - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.UNII, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: UNII - semantic: SmallMolecule - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-UNII" - # testExamples: - # - qInput: "SNOMEDCT:239792003" ## Seronegative rheumatoid arthritis (disorder) - # oneOutput: "UNII:FYS6T7F842" ## adalimumab - ProcedureNCIT_increased_DiseaseMONDO: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Procedure%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO - ## 29 records - - supportBatch: true - useTemplating: true - inputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C3586" ## Acute Lymphoblastic Leukemia in Remission + # oneOutput: "NCIT:C15271" ## Liver Transplantation + PhenoNCIT_increased_PhenoNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Procedure - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-MONDO" - # testExamples: - # - qInput: "NCIT:C50815" ## Aortic Valve Replacement - # oneOutput: "MONDO:0005025" ## endocarditis (disease) - ProcedureNCIT_increased_DiseaseMONDO-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C3586" ## Acute Lymphoblastic Leukemia in Remission + # oneOutput: "NCIT:C3587" ## Chronic Lymphocytic Leukemia in Remission + PhenoNCIT_increased_PhenoSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT + ## 1 records + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Procedure - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-NCIT" - # testExamples: - # - qInput: "MONDO:0024317" ## chronic pain syndrome - # oneOutput: "NCIT:C52007" ## Arthrodesis - ## no records for ProcedureNCIT_increased_DiseaseNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Procedure%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT - ProcedureNCIT_increased_DiseaseSNOMEDCT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Procedure%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "NCIT:C38033" ## Arthroscopy + # oneOutput: "SNOMEDCT:197354009" ## Toxic liver disease (disorder) + PhenoNCIT_increased_PhenoSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "SNOMEDCT:197354009" ## Toxic liver disease (disorder) + # oneOutput: "NCIT:C3587" ## Chronic Lymphocytic Leukemia in Remission + PhenoNCIT_increased_ProcedureNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure%20AND%20_exists_:object.NCIT ## 3 records - - supportBatch: true - useTemplating: true - inputs: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Procedure - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C52007" ## Arthrodesis + # oneOutput: "NCIT:C159516" ## Liver Lesion + PhenoNCIT_increased_ProcedureNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C155871" ## Herpes Simplex Virus Infection + # oneOutput: "NCIT:C3588" ## Acute Myeloid Leukemia in Remission + PhenoSNOMEDCT_decreased_DiseaseMONDO: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO + ## 307 records + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" - # testExamples: - # - qInput: "NCIT:C15546" ## Breast Cancer Screening - # oneOutput: "SNOMEDCT:239791005" ## Seropositive rheumatoid arthritis (disorder) - ProcedureNCIT_increased_DiseaseSNOMEDCT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "SNOMEDCT:711150003" ## Long-term current use of anticoagulant (situation) + # oneOutput: "MONDO:0011786" ## allergic rhinitis + PhenoSNOMEDCT_decreased_DiseaseMONDO_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: MONDO + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "MONDO:0008383" ## rheumatoid arthritis + # oneOutput: "SNOMEDCT:201839001" ## Primary coxarthrosis, bilateral (disorder) + PhenoSNOMEDCT_decreased_DiseaseNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT + ## 1 records + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: NCIT - semantic: Procedure - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-NCIT" - # testExamples: - # - qInput: "SNOMEDCT:2415007" ## Lumbosacral radiculopathy (disorder) - # oneOutput: "NCIT:C52007" ## Arthrodesis - ChemCHEBI_increased_PhenoHP: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP - ## 4955 records - - supportBatch: true - useTemplating: true - inputs: - - id: CHEBI - semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-HP" - # testExamples: - # - qInput: "CHEBI:100241" ## ciprofloxacin - # oneOutput: "HP:0012213" ## Decreased glomerular filtration rate - ChemCHEBI_increased_PhenoHP-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.CHEBI, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: CHEBI - semantic: SmallMolecule - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-CHEBI" - # testExamples: - # - qInput: "HP:0011897" ## Neutrophilia - # oneOutput: "CHEBI:100241" ## ciprofloxacin - ChemCHEBI_increased_PhenoNCIT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT - ## 222 records - - supportBatch: true - useTemplating: true - inputs: - - id: CHEBI - semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "SNOMEDCT:127295002" ## Traumatic brain injury (disorder) + # oneOutput: "NCIT:C171647" ## SARS Coronavirus 2 Positive + PhenoSNOMEDCT_decreased_DiseaseNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-NCIT" - # testExamples: - # - qInput: "CHEBI:167638" ## labetalol - # oneOutput: "NCIT:C146650" ## Clostridium difficile Positive - ChemCHEBI_increased_PhenoNCIT-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: NCIT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.CHEBI, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: CHEBI - semantic: SmallMolecule - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-CHEBI" - # testExamples: - # - qInput: "NCIT:C167118" ## Influenza B Virus Positive - # oneOutput: "CHEBI:16714" ## codeine - ChemCHEBI_increased_PhenoSNOMEDCT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT - ## 15 records - - supportBatch: true - useTemplating: true - inputs: - - id: CHEBI - semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "NCIT:C167118" ## Influenza A Virus Positive + # oneOutput: "SNOMEDCT:239791005" ## Seropositive rheumatoid arthritis (disorder) + PhenoSNOMEDCT_decreased_DiseaseSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT + ## 26 records + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" - # testExamples: - # - qInput: "CHEBI:6888" ## methylprednisolone - # oneOutput: "SNOMEDCT:48440001" ## Arthritis due to gout (disorder) - ChemCHEBI_increased_PhenoSNOMEDCT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "SNOMEDCT:709073001" ## Neurocognitive disorder (disorder) + # oneOutput: "SNOMEDCT:197354009" ## Toxic liver disease (disorder) + PhenoSNOMEDCT_decreased_DiseaseSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.CHEBI, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: CHEBI - semantic: SmallMolecule - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-CHEBI" - # testExamples: - # - qInput: "SNOMEDCT:48440001" ## Arthritis due to gout (disorder) - # oneOutput: "CHEBI:7476" ## naproxen - ChemUNII_increased_PhenoHP: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP - ## 390 records - - supportBatch: true - useTemplating: true - inputs: - - id: UNII - semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.UNII", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-HP" - # testExamples: - # - qInput: "UNII:1BJ477IO2L" ## gadobutrol - # oneOutput: "HP:0025406" ## Asthenia - ChemUNII_increased_PhenoHP-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.UNII, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: UNII - semantic: SmallMolecule - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-UNII" - # testExamples: - # - qInput: "HP:0011227" ## Elevated C-reactive protein level - # oneOutput: "UNII:1BJ477IO2L" ## gadobutrol - ChemUNII_increased_PhenoNCIT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT - ## 26 records - - supportBatch: true - useTemplating: true - inputs: - - id: UNII - semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.UNII", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: NCIT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-NCIT" - # testExamples: - # - qInput: "UNII:T2410KM04A" ## heparin - # oneOutput: "NCIT:C146650" ## Clostridium difficile Positive - ChemUNII_increased_PhenoNCIT-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: NCIT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.UNII, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: UNII - semantic: SmallMolecule - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-UNII" - # testExamples: - # - qInput: "NCIT:C171647" ## SARS Coronavirus 2 Positive - # oneOutput: "UNII:E47C0NF7LV" ## enoxaparin - ## no records for ChemUNII_increased_PhenoSNOMEDCT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT - ProcedureNCIT_increased_PhenoHP: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Procedure%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP - ## 21 records - - supportBatch: true - useTemplating: true - inputs: - - id: NCIT - semantic: Procedure - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-HP" - # testExamples: - # - qInput: "NCIT:C50815" ## Aortic Valve Replacement - # oneOutput: "HP:0002094" ## Dyspnea - ProcedureNCIT_increased_PhenoHP-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "SNOMEDCT:2415007" ## Lumbosacral radiculopathy (disorder) + # oneOutput: "SNOMEDCT:239792003" ## Seronegative rheumatoid arthritis (disorder) + PhenoSNOMEDCT_decreased_PhenoHP: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP + ## 217 records + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "SNOMEDCT:191519005" ## Dementia associated with another disease (disorder) + # oneOutput: "HP:0031506" ## Increased circulating T4 level + PhenoSNOMEDCT_decreased_PhenoHP_rev: + -supportBatch: true + useTemplating: true + inputs: - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: NCIT - semantic: Procedure - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-NCIT" - # testExamples: - # - qInput: "HP:0001919" ## Acute kidney injury - # oneOutput: "NCIT:C50815" ## Aortic Valve Replacement - ## no records for ProcedureNCIT_increased_PhenoNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Procedure%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT - ## no records for ProcedureNCIT_increased_PhenoSNOMEDCT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Procedure%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT - ChemCHEBI_increased_ProcedureNCIT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Procedure - ## 19 records - - supportBatch: true - useTemplating: true - inputs: - - id: CHEBI - semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: NCIT - semantic: Procedure - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-NCIT" - # testExamples: - # - qInput: "CHEBI:3311" ## calcium carbonate - # oneOutput: "NCIT:C15271" ## Liver Transplantation - ChemCHEBI_increased_ProcedureNCIT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "HP:0001397" ## Hepatic steatosis + # oneOutput: "SNOMEDCT:166816003" ## Serum lipids high (finding) + PhenoSNOMEDCT_decreased_PhenoNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT + ## 25 records + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "SNOMEDCT:47049007" ## Ankylosis of spine (disorder) + # oneOutput: "NCIT:C3587" ## Chronic Lymphocytic Leukemia in Remission + PhenoSNOMEDCT_decreased_PhenoNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Procedure - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.CHEBI, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: CHEBI - semantic: SmallMolecule - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-CHEBI" - # testExamples: - # - qInput: "NCIT:C15271" ## Liver Transplantation - # oneOutput: "CHEBI:534" ## docusate - ChemUNII_increased_ProcedureNCIT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Procedure + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "NCIT:C15271" ## Liver Transplantation + # oneOutput: "SNOMEDCT:197354009" ## Toxic liver disease (disorder) + PhenoSNOMEDCT_decreased_PhenoSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT ## 2 records - - supportBatch: true - useTemplating: true - inputs: - - id: UNII - semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.UNII", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: NCIT - semantic: Procedure - predicate: associated_with - qualifiers: - object_direction_qualifier: increased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-NCIT" - # testExamples: - # - qInput: "UNII:3FYP5M0IJX" ## sennosides - # oneOutput: "NCIT:C15271" ## Liver Transplantation - ChemUNII_increased_ProcedureNCIT-rev: - - supportBatch: true - useTemplating: true - inputs: + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "SNOMEDCT:191519005" ## Dementia associated with another disease (disorder) + # oneOutput: "SNOMEDCT:127295002" ## Traumatic brain injury (disorder) + PhenoSNOMEDCT_decreased_PhenoSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "SNOMEDCT:386033004" ## Neuropathy (disorder) + # oneOutput: "SNOMEDCT:47049007" ## Ankylosis of spine (disorder) + PhenoSNOMEDCT_decreased_ProcedureNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure%20AND%20_exists_:object.NCIT + ## 2 records + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "SNOMEDCT:197352008" ## Toxic hepatitis (disorder) + # oneOutput: "NCIT:C171647" ## SARS Coronavirus 2 Positive + PhenoSNOMEDCT_decreased_ProcedureNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Procedure - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.UNII, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: UNII - semantic: SmallMolecule - predicate: associated_with - qualifiers: - subject_direction_qualifier: increased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-UNII" - # testExamples: - # - qInput: "NCIT:C15271" ## Liver Transplantation - # oneOutput: "UNII:T2410KM04A" ## heparin - ## no records for ProcedureNCIT_increased_ProcedureNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Procedure%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_increased_likelihood_of%20AND%20object.type:Procedure - ChemCHEBI_decreased_DiseaseMONDO: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO - ## 4281 records - - supportBatch: true - useTemplating: true - inputs: - - id: CHEBI - semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-MONDO" - # testExamples: - # - qInput: "CHEBI:100241" ## ciprofloxacin - # oneOutput: "MONDO:0005298" ## osteoporosis - ChemCHEBI_decreased_DiseaseMONDO-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "NCIT:C155871" ## Herpes Simplex Virus Infection + # oneOutput: "SNOMEDCT:76571007" ## Septic shock (disorder) + PhenoSNOMEDCT_increased_DiseaseMONDO: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO + ## 158 records + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "SNOMEDCT:54404000" ## Cervical radiculopathy (disorder) + # oneOutput: "MONDO:0005420" ## hypothyroidism + PhenoSNOMEDCT_increased_DiseaseMONDO_rev: + -supportBatch: true + useTemplating: true + inputs: - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.CHEBI, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: CHEBI - semantic: SmallMolecule - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-CHEBI" - # testExamples: - # - qInput: "MONDO:0005173" ## actinic keratosis (disease) - # oneOutput: "CHEBI:100241" ## ciprofloxacin - ChemCHEBI_decreased_DiseaseNCIT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT - ## 1 record - - supportBatch: true - useTemplating: true - inputs: - - id: CHEBI - semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: NCIT - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-NCIT" - # testExamples: - # - qInput: "CHEBI:5855" ## ibuprofen - # oneOutput: "NCIT:C116994" ## Lupus Anticoagulant Disorder - ChemCHEBI_decreased_DiseaseNCIT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "MONDO:0020066" ## Ehlers-Danlos syndrome + # oneOutput: "SNOMEDCT:127295002" ## Traumatic brain injury (disorder) + PhenoSNOMEDCT_increased_DiseaseNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT + ## 2 records + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "SNOMEDCT:711150003" ## Long-term current use of anticoagulant (situation) + # oneOutput: "NCIT:C167118" ## Influenza A Virus Positive + PhenoSNOMEDCT_increased_DiseaseNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.CHEBI, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: CHEBI - semantic: SmallMolecule - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-CHEBI" - # testExamples: - # - qInput: "NCIT:C116994" ## Lupus Anticoagulant Disorder - # oneOutput: "CHEBI:5855" ## ibuprofen - ChemCHEBI_decreased_DiseaseSNOMEDCT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT - ## 288 records - - supportBatch: true - useTemplating: true - inputs: - - id: CHEBI - semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "NCIT:C116994" ## Lupus Anticoagulant Disorder + # oneOutput: "SNOMEDCT:386033004" ## Neuropathy (disorder) + PhenoSNOMEDCT_increased_DiseaseSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT + ## 13 records + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" - # testExamples: - # - qInput: "CHEBI:119915" ## fentanyl - # oneOutput: "SNOMEDCT:54404000" ## Cervical radiculopathy (disorder) - ChemCHEBI_decreased_DiseaseSNOMEDCT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "SNOMEDCT:2415007" ## Lumbosacral radiculopathy (disorder) + # oneOutput: "SNOMEDCT:709073001" ## Neurocognitive disorder (disorder) + PhenoSNOMEDCT_increased_DiseaseSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.CHEBI, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: CHEBI - semantic: SmallMolecule - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-CHEBI" - # testExamples: - # - qInput: "SNOMEDCT:237519003" ## Autoimmune hypothyroidism (disorder) - # oneOutput: "CHEBI:119915" ## fentanyl - ChemUNII_decreased_DiseaseMONDO: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO - ## 41 records - - supportBatch: true - useTemplating: true - inputs: - - id: UNII - semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.UNII", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-MONDO" - # testExamples: - # - qInput: "UNII:3FYP5M0IJX" ## sennosides - # oneOutput: "MONDO:0004946" ## hypoglycemia - ChemUNII_decreased_DiseaseMONDO-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.UNII, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: UNII - semantic: SmallMolecule - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-UNII" - # testExamples: - # - qInput: "MONDO:0004375" ## end stage renal failure - # oneOutput: "UNII:3FYP5M0IJX" ## sennosides - ## no records for ChemUNII_decreased_DiseaseNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT - ChemUNII_decreased_DiseaseSNOMEDCT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT - ## 2 records - - supportBatch: true - useTemplating: true - inputs: - - id: UNII - semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.UNII", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "SNOMEDCT:386033004" ## Neuropathy (disorder) + # oneOutput: "SNOMEDCT:202805003" ## Sacroiliac disorder (disorder) + PhenoSNOMEDCT_increased_PhenoHP: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP + ## 113 records + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "SNOMEDCT:201839001" ## Primary coxarthrosis, bilateral (disorder) + # oneOutput: "HP:0003259" ## Elevated serum creatinine + PhenoSNOMEDCT_increased_PhenoHP_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: HP + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "HP:0002829" ## Arthralgia + # oneOutput: "SNOMEDCT:66944004" ## Autoimmune thyroiditis (disorder) + PhenoSNOMEDCT_increased_PhenoNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT + ## 5 records + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" - # testExamples: - # - qInput: "UNII:OP401G7OJC" ## etanercept - # oneOutput: "SNOMEDCT:239792003" ## Seronegative rheumatoid arthritis (disorder) - ChemUNII_decreased_DiseaseSNOMEDCT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "SNOMEDCT:166816003" ## Serum lipids high (finding) + # oneOutput: "NCIT:C171647" ## SARS Coronavirus 2 Positive + PhenoSNOMEDCT_increased_PhenoNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "NCIT:C159516" ## Liver Lesion + # oneOutput: "SNOMEDCT:239791005" ## Seropositive rheumatoid arthritis (disorder) + PhenoSNOMEDCT_increased_ProcedureNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:PhenotypicFeature%20AND%20_exists_:subject.SNOMEDCT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure%20AND%20_exists_:object.NCIT + ## 1 records + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.UNII, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: UNII - semantic: SmallMolecule - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-UNII" - # testExamples: - # - qInput: "SNOMEDCT:239791005" ## Seropositive rheumatoid arthritis (disorder) - # oneOutput: "UNII:OP401G7OJC" ## etanercept + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["subject.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "SNOMEDCT:201839001" ## Primary coxarthrosis, bilateral (disorder) + # oneOutput: "NCIT:C3588" ## Acute Myeloid Leukemia in Remission + PhenoSNOMEDCT_increased_ProcedureNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_increased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "NCIT:C167118" ## Influenza A Virus Positive + # oneOutput: "SNOMEDCT:197352008" ## Toxic hepatitis (disorder) ProcedureNCIT_decreased_DiseaseMONDO: ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Procedure%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO - ## 60 records - - supportBatch: true - useTemplating: true - inputs: + ## 721 records + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Procedure - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.MONDO, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "NCIT:C167118" ## Influenza A Virus Positive + # oneOutput: "MONDO:0012883" ## acute promyelocytic leukemia + ProcedureNCIT_decreased_DiseaseMONDO_rev: + -supportBatch: true + useTemplating: true + inputs: - id: MONDO - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-MONDO" - # testExamples: - # - qInput: "NCIT:C15546" ## Breast Cancer Screening - # oneOutput: "MONDO:0007743" ## attention deficit-hyperactivity disorder - ProcedureNCIT_decreased_DiseaseMONDO-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: MONDO - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: NCIT - semantic: Procedure - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-NCIT" - # testExamples: - # - qInput: "MONDO:0005294" ## peripheral vascular disease - # oneOutput: "NCIT:C15546" ## Breast Cancer Screening - ## no records for ProcedureNCIT_decreased_DiseaseNCIT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "MONDO:0005393" ## gout + # oneOutput: "NCIT:C116994" ## Lupus Anticoagulant Disorder + ProcedureNCIT_decreased_DiseaseNCIT: ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Procedure%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT + ## 4 records + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C159516" ## Liver Lesion + # oneOutput: "NCIT:C116994" ## Lupus Anticoagulant Disorder + ProcedureNCIT_decreased_DiseaseNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C171647" ## SARS Coronavirus 2 Positive + # oneOutput: "NCIT:C141278" ## Adenovirus Positive ProcedureNCIT_decreased_DiseaseSNOMEDCT: ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Procedure%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT - ## 4 records - - supportBatch: true - useTemplating: true - inputs: + ## 58 records + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Procedure - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "NCIT:C171647" ## SARS Coronavirus 2 Positive + # oneOutput: "SNOMEDCT:66944004" ## Autoimmune thyroiditis (disorder) + ProcedureNCIT_decreased_DiseaseSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: Disease - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" - # testExamples: - # - qInput: "NCIT:C15546" ## Breast Cancer Screening - # oneOutput: "SNOMEDCT:54404000" ## Cervical radiculopathy (disorder) - ProcedureNCIT_decreased_DiseaseSNOMEDCT-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: SNOMEDCT - semantic: Disease - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:Disease"]') }} ], - "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_decreased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "SNOMEDCT:711150003" ## Long-term current use of anticoagulant (situation) + # oneOutput: "NCIT:C141278" ## Adenovirus Positive + ProcedureNCIT_decreased_PhenoHP: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Procedure%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP + ## 502 records + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Procedure - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-NCIT" - # testExamples: - # - qInput: "SNOMEDCT:239792003" ## Seronegative rheumatoid arthritis (disorder) - # oneOutput: "NCIT:C15546" ## Breast Cancer Screening - ChemCHEBI_decreased_PhenoHP: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP - ## 5600 records - - supportBatch: true - useTemplating: true - inputs: - - id: CHEBI - semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "NCIT:C141278" ## Adenovirus Positive + # oneOutput: "HP:0001260" ## Dysarthria + ProcedureNCIT_decreased_PhenoHP_rev: + -supportBatch: true + useTemplating: true + inputs: - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-HP" - # testExamples: - # - qInput: "CHEBI:100241" ## ciprofloxacin - # oneOutput: "HP:0002904" ## Hyperbilirubinemia - ChemCHEBI_decreased_PhenoHP-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.CHEBI, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: CHEBI - semantic: SmallMolecule - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-CHEBI" - # testExamples: - # - qInput: "HP:0002829" ## Arthralgia - # oneOutput: "CHEBI:100241" ## ciprofloxacin - ChemCHEBI_decreased_PhenoNCIT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT - ## 191 records - - supportBatch: true - useTemplating: true - inputs: - - id: CHEBI - semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "HP:0011900" ## Hypofibrinogenemia + # oneOutput: "NCIT:C167118" ## Influenza A Virus Positive + ProcedureNCIT_decreased_PhenoNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Procedure%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT + ## 56 records + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-NCIT" - # testExamples: - # - qInput: "CHEBI:135866" ## clindamycin - # oneOutput: "NCIT:C171647" ## SARS Coronavirus 2 Positive - ChemCHEBI_decreased_PhenoNCIT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C159516" ## Liver Lesion + # oneOutput: "NCIT:C146650" ## Clostridium difficile Positive + ProcedureNCIT_decreased_PhenoNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.CHEBI, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: CHEBI - semantic: SmallMolecule - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-CHEBI" - # testExamples: - # - qInput: "NCIT:C171647" ## SARS Coronavirus 2 Positive - # oneOutput: "CHEBI:119915" ## fentanyl - ChemCHEBI_decreased_PhenoSNOMEDCT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT - ## 28 records - - supportBatch: true - useTemplating: true - inputs: - - id: CHEBI - semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.SNOMEDCT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: SNOMEDCT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" - # testExamples: - # - qInput: "CHEBI:2955" ## azithromycin - # oneOutput: "SNOMEDCT:48440001" ## Arthritis due to gout (disorder) - ChemCHEBI_decreased_PhenoSNOMEDCT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C3586" ## Acute Lymphoblastic Leukemia in Remission + # oneOutput: "NCIT:C167118" ## Influenza A Virus Positive + ProcedureNCIT_decreased_PhenoSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Procedure%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT + ## 4 records + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "NCIT:C52007" ## Arthrodesis + # oneOutput: "SNOMEDCT:48440001" ## Arthritis due to gout (disorder) + ProcedureNCIT_decreased_PhenoSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: SNOMEDCT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.CHEBI, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: CHEBI - semantic: SmallMolecule - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-CHEBI" - # testExamples: - # - qInput: "SNOMEDCT:48440001" ## Arthritis due to gout (disorder) - # oneOutput: "CHEBI:4636" ## diphenhydramine - ChemUNII_decreased_PhenoHP: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP - ## 113 records - - supportBatch: true - useTemplating: true - inputs: - - id: UNII - semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.UNII", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-HP" - # testExamples: - # - qInput: "UNII:1BJ477IO2L" ## gadobutrol - # oneOutput: "HP:0031969" ## Reduced blood urea nitrogen - ChemUNII_decreased_PhenoHP-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.UNII, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: UNII - semantic: SmallMolecule - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-UNII" - # testExamples: - # - qInput: "HP:0031098" ## Decreased thyroid-stimulating hormone level - # oneOutput: "UNII:1BJ477IO2L" ## gadobutrol - ChemUNII_decreased_PhenoNCIT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT - ## 1 record - - supportBatch: true - useTemplating: true - inputs: - - id: UNII - semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.UNII", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "SNOMEDCT:239791005" ## Seropositive rheumatoid arthritis (disorder) + # oneOutput: "NCIT:C146650" ## Clostridium difficile Positive + ProcedureNCIT_decreased_ProcedureNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Procedure%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure%20AND%20_exists_:object.NCIT + ## 3 records + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-NCIT" - # testExamples: - # - qInput: "UNII:1BJ477IO2L" ## gadobutrol - # oneOutput: "NCIT:C171647" ## SARS Coronavirus 2 Positive - ChemUNII_decreased_PhenoNCIT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_decreased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C38033" ## Arthroscopy + # oneOutput: "NCIT:C167118" ## Influenza A Virus Positive + ProcedureNCIT_decreased_ProcedureNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.UNII, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: UNII - semantic: SmallMolecule - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-UNII" - # testExamples: - # - qInput: "NCIT:C171647" ## SARS Coronavirus 2 Positive - # oneOutput: "UNII:1BJ477IO2L" ## gadobutrol - ## no records for ChemUNII_decreased_PhenoSNOMEDCT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT - ProcedureNCIT_decreased_PhenoHP: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Procedure%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP - ## 81 records - - supportBatch: true - useTemplating: true - inputs: + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_decreased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: decreased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C146650" ## Clostridium difficile Positive + # oneOutput: "NCIT:C155871" ## Herpes Simplex Virus Infection + ProcedureNCIT_increased_DiseaseMONDO: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Procedure%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.MONDO + ## 209 records + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Procedure - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.HP, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: HP - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-HP" - # testExamples: - # - qInput: "NCIT:C15546" ## Breast Cancer Screening - # oneOutput: "HP:0001882" ## Leukopenia - ProcedureNCIT_decreased_PhenoHP-rev: - - supportBatch: true - useTemplating: true - inputs: - - id: HP - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.MONDO, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: MONDO + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-MONDO" + # testExamples: + # - qInput: "NCIT:C116994" ## Lupus Anticoagulant Disorder + # oneOutput: "MONDO:0006694" ## cerebral atherosclerosis + ProcedureNCIT_increased_DiseaseMONDO_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: MONDO + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.MONDO", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "MONDO:0005155" ## cirrhosis of liver + # oneOutput: "NCIT:C38033" ## Arthroscopy + ProcedureNCIT_increased_DiseaseNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Procedure%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.NCIT + ## 2 records + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Procedure - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-NCIT" - # testExamples: - # - qInput: "HP:0001681" ## Angina pectoris - # oneOutput: "NCIT:C15546" ## Breast Cancer Screening - ProcedureNCIT_decreased_PhenoNCIT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Procedure%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT - ## 5 records - - supportBatch: true - useTemplating: true - inputs: + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C3587" ## Chronic Lymphocytic Leukemia in Remission + # oneOutput: "NCIT:C15271" ## Liver Transplantation + ProcedureNCIT_increased_DiseaseNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C3586" ## Acute Lymphoblastic Leukemia in Remission + # oneOutput: "NCIT:C3587" ## Chronic Lymphocytic Leukemia in Remission + ProcedureNCIT_increased_DiseaseSNOMEDCT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Procedure%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Disease%20AND%20_exists_:object.SNOMEDCT + ## 20 records + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Procedure - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: Disease + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "NCIT:C3588" ## Acute Myeloid Leukemia in Remission + # oneOutput: "SNOMEDCT:197352008" ## Toxic hepatitis (disorder) + ProcedureNCIT_increased_DiseaseSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: Disease + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_increased_likelihood_of", "biolink:Disease"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "SNOMEDCT:2415007" ## Lumbosacral radiculopathy (disorder) + # oneOutput: "NCIT:C52007" ## Arthrodesis + ProcedureNCIT_increased_PhenoHP: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Procedure%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.HP + ## 158 records + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: PhenotypicFeature - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-NCIT" - # testExamples: - # - qInput: "NCIT:C15546" ## Breast Cancer Screening - # oneOutput: "NCIT:C167118" ## Influenza B Virus Positive - ProcedureNCIT_decreased_PhenoNCIT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.HP, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: HP + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-HP" + # testExamples: + # - qInput: "NCIT:C141278" ## Adenovirus Positive + # oneOutput: "HP:0001369" ## Arthritis + ProcedureNCIT_increased_PhenoHP_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: HP + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.HP", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "HP:0008151" ## Prolonged prothrombin time + # oneOutput: "NCIT:C155871" ## Herpes Simplex Virus Infection + ProcedureNCIT_increased_PhenoNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Procedure%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.NCIT + ## 4 records + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: PhenotypicFeature - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:PhenotypicFeature", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C167118" ## Influenza A Virus Positive + # oneOutput: "NCIT:C3588" ## Acute Myeloid Leukemia in Remission + ProcedureNCIT_increased_PhenoNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Procedure - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-NCIT" - # testExamples: - # - qInput: "NCIT:C171647" ## SARS Coronavirus 2 Positive - # oneOutput: "NCIT:C15546" ## Breast Cancer Screening - ## no records for ProcedureNCIT_decreased_PhenoSNOMEDCT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C159516" ## Liver Lesion + # oneOutput: "NCIT:C116994" ## Lupus Anticoagulant Disorder + ProcedureNCIT_increased_PhenoSNOMEDCT: ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Procedure%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:PhenotypicFeature%20AND%20_exists_:object.SNOMEDCT - ChemCHEBI_decreased_ProcedureNCIT: - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.CHEBI%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure - ## 8 records - - supportBatch: true - useTemplating: true - inputs: - - id: CHEBI - semantic: SmallMolecule - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap ( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["subject.CHEBI", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - object.NCIT, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: + ## 2 records + -supportBatch: true + useTemplating: true + inputs: + - id: NCIT + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.SNOMEDCT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: SNOMEDCT + semantic: PhenotypicFeature + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-SNOMEDCT" + # testExamples: + # - qInput: "NCIT:C155871" ## Herpes Simplex Virus Infection + # oneOutput: "SNOMEDCT:239791005" ## Seropositive rheumatoid arthritis (disorder) + ProcedureNCIT_increased_PhenoSNOMEDCT_rev: + -supportBatch: true + useTemplating: true + inputs: + - id: SNOMEDCT + - semantic: PhenotypicFeature + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_increased_likelihood_of", "biolink:PhenotypicFeature"]') } ] + "scopes": ["object.SNOMEDCT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "SNOMEDCT:197354009" ## Toxic liver disease (disorder) + # oneOutput: "NCIT:C51691" ## Arthroplasty + ProcedureNCIT_increased_ProcedureNCIT: + ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Procedure%20AND%20_exists_:subject.NCIT%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure%20AND%20_exists_:object.NCIT + ## 2 records + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Procedure - predicate: associated_with - qualifiers: - object_direction_qualifier: decreased - object_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/object-NCIT" - # testExamples: - # - qInput: "CHEBI:6637" ## magnesium hydroxide - # oneOutput: "NCIT:C15271" ## Liver Transplantation - ChemCHEBI_decreased_ProcedureNCIT-rev: - - supportBatch: true - useTemplating: true - inputs: + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_increased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["subject.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: object.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C15546" ## Breast Cancer Screening + # oneOutput: "NCIT:C167118" ## Influenza A Virus Positive + ProcedureNCIT_increased_ProcedureNCIT_rev: + -supportBatch: true + useTemplating: true + inputs: - id: NCIT - semantic: Procedure - requestBodyType: object - requestBody: - body: >- - { - "q": [ {{ queryInputs | rmPrefix() | wrap( '["' , '","biolink:ChemicalEntity", "associated_with_decreased_likelihood_of", "biolink:PhenotypicFeature"]') }} ], - "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] - } - parameters: - fields: >- - subject.CHEBI, - association.edge_attributes, - subject.name,object.name - size: 1000 - outputs: - - id: CHEBI - semantic: SmallMolecule - predicate: associated_with - qualifiers: - subject_direction_qualifier: decreased - subject_aspect_qualifier: likelihood - response_mapping: - "$ref": "#/components/x-bte-response-mapping/subject-CHEBI" - # testExamples: - # - qInput: "NCIT:C15271" ## Liver Transplantation - # oneOutput: "CHEBI:5855" ## ibuprofen - ## no records for ChemUNII_decreased_ProcedureNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:ChemicalEntity%20AND%20_exists_:subject.UNII%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure - ## no records for ProcedureNCIT_decreased_ProcedureNCIT - ## https://pending.biothings.io/multiomics_ehr_risk_kp/query?q=subject.type:Procedure%20AND%20association.predicate:associated_with_decreased_likelihood_of%20AND%20object.type:Procedure + - semantic: Procedure + requestBody: + body: >- + { + "q": [ { queryInputs | rmPrefix() | wrap ( '["' , '","biolink:Procedure", "associated_with_increased_likelihood_of", "biolink:Procedure"]') } ] + "scopes": ["object.NCIT", "subject.type", "association.predicate", "object.type"] + } + parameters: + fields: subject.NCIT, association.edge_attributes, subject.name, object.name, source.edge_sources + size: 1000 + outputs: + -id: NCIT + semantic: Procedure + predicate: associated_with + qualifiers: + object_direction_qualifier: increased + object_aspect_qualifier: likelihood + response_mapping: + "ref": "#/components/x-bte-response-mapping/object-NCIT" + # testExamples: + # - qInput: "NCIT:C155871" ## Herpes Simplex Virus Infection + # oneOutput: "NCIT:C51691" ## Arthroplasty + x-bte-response-mapping: object-MONDO: MONDO: object.MONDO input_name: subject.name output_name: object.name edge-attributes: association.edge_attributes + trapi_sources: source.edge_sources object-NCIT: NCIT: object.NCIT input_name: subject.name output_name: object.name edge-attributes: association.edge_attributes + trapi_sources: source.edge_sources object-SNOMEDCT: SNOMEDCT: object.SNOMEDCT input_name: subject.name output_name: object.name edge-attributes: association.edge_attributes + trapi_sources: source.edge_sources object-HP: HP: object.HP input_name: subject.name output_name: object.name edge-attributes: association.edge_attributes + trapi_sources: source.edge_sources object-CHEBI: CHEBI: object.CHEBI input_name: subject.name output_name: object.name edge-attributes: association.edge_attributes + trapi_sources: source.edge_sources object-UNII: UNII: object.UNII input_name: subject.name output_name: object.name edge-attributes: association.edge_attributes + trapi_sources: source.edge_sources subject-MONDO: MONDO: subject.MONDO input_name: object.name output_name: subject.name edge-attributes: association.edge_attributes + trapi_sources: source.edge_sources subject-NCIT: NCIT: subject.NCIT input_name: object.name output_name: subject.name edge-attributes: association.edge_attributes + trapi_sources: source.edge_sources subject-SNOMEDCT: SNOMEDCT: subject.SNOMEDCT input_name: object.name output_name: subject.name edge-attributes: association.edge_attributes + trapi_sources: source.edge_sources subject-HP: HP: subject.HP input_name: object.name output_name: subject.name edge-attributes: association.edge_attributes + trapi_sources: source.edge_sources subject-CHEBI: CHEBI: subject.CHEBI input_name: object.name output_name: subject.name edge-attributes: association.edge_attributes + trapi_sources: source.edge_sources subject-UNII: UNII: subject.UNII input_name: object.name output_name: subject.name edge-attributes: association.edge_attributes + trapi_sources: source.edge_sources