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multiomics_wellness_TRAPI_1.4.yaml
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multiomics_wellness_TRAPI_1.4.yaml
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---
info:
x-translator:
infores: "infores:biothings-multiomics-wellness"
component: KP
biolink-version: '3.1.1'
team:
- Multiomics Provider
- Service Provider
version: '1.7'
title: Multiomics Wellness KP API
termsOfService: https://biothings.io/about
contact:
email: gglusman@isbscience.org
name: Gwenlyn Glusman
x-role: responsible developers
x-id: https://github.com/biothings
description: Documentation of the BioThings API for Translator Multiomics Team's Wellness KP.
components:
parameters:
scroll_id:
required: false
in: query
name: scroll_id
schema:
type: string
description: 'Optional, a string containing the _scroll_id returned from a query request with fetch_all = TRUE. Supplying a valid scroll_id will return the next 1000 unordered results. If the next results are not obtained within 1 minute of the previous set of results, the scroll_id becomes stale, and a new one must be obtained with another query request with fetch_all = TRUE. All other parameters are ignored when the scroll_id parameter is supplied. For more information see [examples using scroll_id for a core BioThings API](https://docs.mychem.info/en/latest/doc/chem_query_service.html?highlight=from#scrolling-queries).'
dotfield:
required: false
in: query
name: dotfield
schema:
default: false
type: boolean
description: 'Optional, can be used to control the format of the returned object. If "dotfield" is true, the returned data object is returned flattened (no nested objects) using dotfield notation for key names. Default: false.'
facet_size:
required: false
in: query
name: facet_size
schema:
default: 10
type: integer
description: 'Optional, an integer (1 <= facet_size <= 1000) that specifies how many buckets to return in a [faceted query](https://docs.mychem.info/en/latest/doc/chem_query_service.html?highlight=from#faceted-queries).'
size:
required: false
in: query
name: size
schema:
default: 10
type: integer
description: 'Optional, the maximum number of matching hits to return (with a cap of 1000 at the moment). Default: 10. The combination of "size" and "from" parameters can be used to get paging for a large query.'
email:
required: false
in: query
name: email
schema:
type: string
description: 'Optional, if you are regular users of our services, we encourage you to provide us an email, so that we can better track the usage or follow up with you.'
fetch_all:
required: false
in: query
name: fetch_all
schema:
default: false
type: boolean
description: 'Optional, a boolean, which when TRUE, allows fast retrieval of all unsorted query hits. The return object contains a _scroll_id field, which when passed as a parameter to the query endpoint (see the scroll_id parameter), returns the next 1000 query results. Setting fetch_all = TRUE causes the results to be inherently unsorted, therefore the sort parameter is ignored. For more information, see [examples using fetch_all for a core BioThings API](https://docs.mychem.info/en/latest/doc/chem_query_service.html?highlight=from#scrolling-queries). Default: FALSE.'
sort:
required: false
in: query
name: sort
schema:
type: array
items:
type: string
description: 'Optional, the comma-separated fields to sort on. Prefix with "-" for descending order, otherwise in ascending order. Default: sort by matching scores in descending order.'
fields:
required: false
in: query
name: fields
schema:
default: all
type: string
description: >-
Optional, can be a comma-separated list to limit the fields returned from the object. If "fields=all", all available fields will be returned.
Note that it supports dot notation as well, e.g., you can pass "chebi.name". Default: "fields=all". The parameter "filter" is an alias for this parameter.
callback:
required: false
in: query
name: callback
schema:
type: string
description: 'Optional, you can pass a "callback" parameter to make a JSONP call.'
from:
required: false
in: query
name: from
schema:
default: 0
type: integer
description: 'Optional, the number of matching hits to skip, starting from 0. Default: 0. '
facets:
required: false
in: query
name: facets
schema:
type: array
items:
type: string
description: 'Optional, a single field or comma-separated fields to return facets, can only be used on non-free text fields. E.g. “facets=chembl.molecule_properties.full_mwt”. See [examples of faceted queries for a core BioThings API](https://docs.mychem.info/en/latest/doc/chem_query_service.html?highlight=from#faceted-queries).'
x-bte-response-mapping:
EFO:
EFO: object.EFO
output_name: object.name
input_name: subject.name
edge-attributes: association.attributes
trapi_sources: association.sources
NCIT:
output_name: object.name
NCIT: object.NCIT
input_name: subject.name
edge-attributes: association.attributes
trapi_sources: association.sources
UniProtKB-rev:
output_name: subject.name
input_name: object.name
edge-attributes: association.attributes
UniProtKB: subject.UniProtKB
trapi_sources: association.sources
CAS-rev:
CAS: subject.CAS
output_name: subject.name
input_name: object.name
edge-attributes: association.attributes
trapi_sources: association.sources
HMDB-rev:
output_name: subject.name
input_name: object.name
HMDB: subject.HMDB
edge-attributes: association.attributes
trapi_sources: association.sources
MESH-rev:
output_name: subject.name
input_name: object.name
edge-attributes: association.attributes
trapi_sources: association.sources
MESH: subject.MESH
CHEBI:
output_name: object.name
CHEBI: object.CHEBI
input_name: subject.name
edge-attributes: association.attributes
trapi_sources: association.sources
PUBCHEM_COMPOUND-rev:
output_name: subject.name
input_name: object.name
edge-attributes: association.attributes
PUBCHEM_COMPOUND: subject.PUBCHEM_COMPOUND
trapi_sources: association.sources
HMDB:
output_name: object.name
input_name: subject.name
HMDB: object.HMDB
edge-attributes: association.attributes
trapi_sources: association.sources
UMLS:
output_name: object.name
input_name: subject.name
edge-attributes: association.attributes
trapi_sources: association.sources
UMLS: object.UMLS
LOINC-rev:
output_name: subject.name
input_name: object.name
LOINC: subject.LOINC
edge-attributes: association.attributes
trapi_sources: association.sources
CAS:
CAS: object.CAS
output_name: object.name
input_name: subject.name
edge-attributes: association.attributes
trapi_sources: association.sources
LOINC:
output_name: object.name
input_name: subject.name
LOINC: object.LOINC
edge-attributes: association.attributes
trapi_sources: association.sources
KEGG_COMPOUND-rev:
output_name: subject.name
input_name: object.name
edge-attributes: association.attributes
trapi_sources: association.sources
KEGG_COMPOUND: subject.KEGG_COMPOUND
UMLS-rev:
output_name: subject.name
input_name: object.name
edge-attributes: association.attributes
trapi_sources: association.sources
UMLS: subject.UMLS
EFO-rev:
EFO: subject.EFO
output_name: subject.name
input_name: object.name
edge-attributes: association.attributes
trapi_sources: association.sources
NCIT-rev:
output_name: subject.name
NCIT: subject.NCIT
input_name: object.name
edge-attributes: association.attributes
trapi_sources: association.sources
CHEBI-rev:
output_name: subject.name
CHEBI: subject.CHEBI
input_name: object.name
edge-attributes: association.attributes
trapi_sources: association.sources
PUBCHEM_COMPOUND:
output_name: object.name
input_name: subject.name
edge-attributes: association.attributes
PUBCHEM_COMPOUND: object.PUBCHEM_COMPOUND
trapi_sources: association.sources
UniProtKB:
output_name: object.name
input_name: subject.name
edge-attributes: association.attributes
UniProtKB: object.UniProtKB
trapi_sources: association.sources
MESH:
output_name: object.name
input_name: subject.name
edge-attributes: association.attributes
trapi_sources: association.sources
MESH: object.MESH
KEGG_COMPOUND:
output_name: object.name
input_name: subject.name
edge-attributes: association.attributes
trapi_sources: association.sources
KEGG_COMPOUND: object.KEGG_COMPOUND
x-bte-kgs-operations:
CAS-CHEBI-Rev:
- useTemplating: True
outputs:
- id: CAS
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: CHEBI
semantic: SmallMolecule
parameters:
fields: >-
subject.CAS,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/CAS-rev'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('CHEBI') | wrap( '["', '","biolink:SmallMolecule"]' ) }} ],
"scopes": ["object.CHEBI", "subject.type"]}
PUBCHEM_COMPOUND-PUBCHEM_COMPOUND-Rev:
- useTemplating: True
outputs:
- id: PUBCHEM.COMPOUND
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: PUBCHEM.COMPOUND
semantic: SmallMolecule
parameters:
fields: >-
subject.PUBCHEM_COMPOUND,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/PUBCHEM_COMPOUND-rev'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('PUBCHEM.COMPOUND') | wrap( '["', '","biolink:SmallMolecule"]' ) }} ],
"scopes": ["object.PUBCHEM_COMPOUND", "subject.type"]}
UniProtKB-HMDB:
## https://biothings.ncats.io/multiomics_wellness_kp/query?q=_exists_:subject.UniProtKB AND _exists_:object.HMDB
- useTemplating: True
outputs:
- id: HMDB
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: UniProtKB
semantic: Protein
parameters:
fields: >-
object.HMDB,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/HMDB'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('UniProtKB') | wrap( '["', '","biolink:SmallMolecule"]' ) }} ],
"scopes": ["subject.UniProtKB", "object.type"]}
NCIT-KEGG_COMPOUND:
- useTemplating: True
outputs:
- id: KEGG.COMPOUND
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: NCIT
semantic: ClinicalFinding
parameters:
fields: >-
object.KEGG_COMPOUND,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/KEGG_COMPOUND'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('NCIT') | wrap( '["', '","biolink:SmallMolecule"]' ) }} ],
"scopes": ["subject.NCIT", "object.type"]}
NCIT-NCIT-Rev:
- useTemplating: True
outputs:
- id: NCIT
semantic: ClinicalFinding
requestBodyType: object
inputs:
- id: NCIT
semantic: ClinicalFinding
parameters:
fields: >-
subject.NCIT,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/NCIT-rev'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('NCIT') | wrap( '["', '","biolink:ClinicalFinding"]' ) }} ],
"scopes": ["object.NCIT", "subject.type"]}
CAS-EFO-Rev:
- useTemplating: True
outputs:
- id: CAS
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: EFO
semantic: SmallMolecule
parameters:
fields: >-
subject.CAS,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/CAS-rev'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('EFO') | wrap( '["', '","biolink:SmallMolecule"]' ) }} ],
"scopes": ["object.EFO", "subject.type"]}
UniProtKB-EFO:
## https://biothings.ncats.io/multiomics_wellness_kp/query?q=_exists_:subject.UniProtKB AND _exists_:object.EFO
- useTemplating: True
outputs:
- id: EFO
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: UniProtKB
semantic: Protein
parameters:
fields: >-
object.EFO,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/EFO'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('UniProtKB') | wrap( '["', '","biolink:SmallMolecule"]' ) }} ],
"scopes": ["subject.UniProtKB", "object.type"]}
UniProtKB-UniProtKB-Rev:
- useTemplating: True
outputs:
- id: UniProtKB
semantic: Protein
requestBodyType: object
inputs:
- id: UniProtKB
semantic: Protein
parameters:
fields: >-
subject.UniProtKB,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/UniProtKB-rev'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('UniProtKB') | wrap( '["', '","biolink:Protein"]' ) }} ],
"scopes": ["object.UniProtKB", "subject.type"]}
CHEBI-UMLS-Rev:
- useTemplating: True
outputs:
- id: CHEBI
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: UMLS
semantic: SmallMolecule
parameters:
fields: >-
subject.CHEBI,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/CHEBI-rev'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('UMLS') | wrap( '["', '","biolink:SmallMolecule"]' ) }} ],
"scopes": ["object.UMLS", "subject.type"]}
CHEBI-CHEBI:
## https://biothings.ncats.io/multiomics_wellness_kp/query?q=_exists_:subject.CHEBI AND _exists_:object.CHEBI
- useTemplating: True
outputs:
- id: CHEBI
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: CHEBI
semantic: SmallMolecule
parameters:
fields: >-
object.CHEBI,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/CHEBI'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('CHEBI') | wrap( '["', '","biolink:SmallMolecule"]' ) }} ],
"scopes": ["subject.CHEBI", "object.type"]}
CAS-UMLS-Rev:
- useTemplating: True
outputs:
- id: CAS
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: UMLS
semantic: SmallMolecule
parameters:
fields: >-
subject.CAS,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/CAS-rev'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('UMLS') | wrap( '["', '","biolink:SmallMolecule"]' ) }} ],
"scopes": ["object.UMLS", "subject.type"]}
CAS-KEGG_COMPOUND:
- useTemplating: True
outputs:
- id: KEGG.COMPOUND
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: CAS
semantic: SmallMolecule
parameters:
fields: >-
object.KEGG_COMPOUND,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/KEGG_COMPOUND'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('CAS') | wrap( '["', '","biolink:SmallMolecule"]' ) }} ],
"scopes": ["subject.CAS", "object.type"]}
CHEBI-HMDB:
## https://biothings.ncats.io/multiomics_wellness_kp/query?q=_exists_:subject.CHEBI AND _exists_:object.HMDB
- useTemplating: True
outputs:
- id: HMDB
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: CHEBI
semantic: SmallMolecule
parameters:
fields: >-
object.HMDB,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/HMDB'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('CHEBI') | wrap( '["', '","biolink:SmallMolecule"]' ) }} ],
"scopes": ["subject.CHEBI", "object.type"]}
UniProtKB-KEGG_COMPOUND:
- useTemplating: True
outputs:
- id: KEGG.COMPOUND
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: UniProtKB
semantic: Protein
parameters:
fields: >-
object.KEGG_COMPOUND,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/KEGG_COMPOUND'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('UniProtKB') | wrap( '["', '","biolink:SmallMolecule"]' ) }} ],
"scopes": ["subject.UniProtKB", "object.type"]}
CHEBI-CHEBI-Rev:
- useTemplating: True
outputs:
- id: CHEBI
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: CHEBI
semantic: SmallMolecule
parameters:
fields: >-
subject.CHEBI,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/CHEBI-rev'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('CHEBI') | wrap( '["', '","biolink:SmallMolecule"]' ) }} ],
"scopes": ["object.CHEBI", "subject.type"]}
EFO-KEGG_COMPOUND-Rev:
- useTemplating: True
outputs:
- id: EFO
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: KEGG.COMPOUND
semantic: SmallMolecule
parameters:
fields: >-
subject.EFO,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/EFO-rev'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('KEGG.COMPOUND') | wrap( '["', '","biolink:SmallMolecule"]' ) }} ],
"scopes": ["object.KEGG_COMPOUND", "subject.type"]}
KEGG_COMPOUND-PUBCHEM_COMPOUND:
- useTemplating: True
outputs:
- id: PUBCHEM.COMPOUND
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: KEGG.COMPOUND
semantic: SmallMolecule
parameters:
fields: >-
object.PUBCHEM_COMPOUND,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/PUBCHEM_COMPOUND'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('KEGG.COMPOUND') | wrap( '["', '","biolink:SmallMolecule"]' ) }} ],
"scopes": ["subject.KEGG_COMPOUND", "object.type"]}
LOINC-NCIT-Rev:
- useTemplating: True
outputs:
- id: LOINC
semantic: ClinicalFinding
requestBodyType: object
inputs:
- id: NCIT
semantic: ClinicalFinding
parameters:
fields: >-
subject.LOINC,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/LOINC-rev'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('NCIT') | wrap( '["', '","biolink:ClinicalFinding"]' ) }} ],
"scopes": ["object.NCIT", "subject.type"]}
NCIT-EFO:
## https://biothings.ncats.io/multiomics_wellness_kp/query?q=_exists_:subject.NCIT AND _exists_:object.EFO
- useTemplating: True
outputs:
- id: EFO
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: NCIT
semantic: ClinicalFinding
parameters:
fields: >-
object.EFO,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/EFO'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('NCIT') | wrap( '["', '","biolink:SmallMolecule"]' ) }} ],
"scopes": ["subject.NCIT", "object.type"]}
CHEBI-UMLS:
## https://biothings.ncats.io/multiomics_wellness_kp/query?q=_exists_:subject.CHEBI AND _exists_:object.UMLS
- useTemplating: True
outputs:
- id: UMLS
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: CHEBI
semantic: SmallMolecule
parameters:
fields: >-
object.UMLS,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/UMLS'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('CHEBI') | wrap( '["', '","biolink:SmallMolecule"]' ) }} ],
"scopes": ["subject.CHEBI", "object.type"]}
NCIT-UniProtKB-Rev:
- useTemplating: True
outputs:
- id: NCIT
semantic: ClinicalFinding
requestBodyType: object
inputs:
- id: UniProtKB
semantic: Protein
parameters:
fields: >-
subject.NCIT,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/NCIT-rev'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('UniProtKB') | wrap( '["', '","biolink:ClinicalFinding"]' ) }} ],
"scopes": ["object.UniProtKB", "subject.type"]}
LOINC-HMDB:
## https://biothings.ncats.io/multiomics_wellness_kp/query?q=_exists_:subject.LOINC AND _exists_:object.HMDB
- useTemplating: True
outputs:
- id: HMDB
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: LOINC
semantic: ClinicalFinding
parameters:
fields: >-
object.HMDB,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/HMDB'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('LOINC') | wrap( '["', '","biolink:SmallMolecule"]' ) }} ],
"scopes": ["subject.LOINC", "object.type"]}
EFO-EFO-Rev:
- useTemplating: True
outputs:
- id: EFO
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: EFO
semantic: SmallMolecule
parameters:
fields: >-
subject.EFO,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/EFO-rev'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('EFO') | wrap( '["', '","biolink:SmallMolecule"]' ) }} ],
"scopes": ["object.EFO", "subject.type"]}
LOINC-CAS:
## https://biothings.ncats.io/multiomics_wellness_kp/query?q=_exists_:subject.LOINC AND _exists_:object.CAS
- useTemplating: True
outputs:
- id: CAS
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: LOINC
semantic: ClinicalFinding
parameters:
fields: >-
object.CAS,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/CAS'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('LOINC') | wrap( '["', '","biolink:SmallMolecule"]' ) }} ],
"scopes": ["subject.LOINC", "object.type"]}
LOINC-CAS-Rev:
- useTemplating: True
outputs:
- id: LOINC
semantic: ClinicalFinding
requestBodyType: object
inputs:
- id: CAS
semantic: SmallMolecule
parameters:
fields: >-
subject.LOINC,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/LOINC-rev'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('CAS') | wrap( '["', '","biolink:ClinicalFinding"]' ) }} ],
"scopes": ["object.CAS", "subject.type"]}
NCIT-PUBCHEM_COMPOUND:
- useTemplating: True
outputs:
- id: PUBCHEM.COMPOUND
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: NCIT
semantic: ClinicalFinding
parameters:
fields: >-
object.PUBCHEM_COMPOUND,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/PUBCHEM_COMPOUND'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('NCIT') | wrap( '["', '","biolink:SmallMolecule"]' ) }} ],
"scopes": ["subject.NCIT", "object.type"]}
CAS-UMLS:
## https://biothings.ncats.io/multiomics_wellness_kp/query?q=_exists_:subject.CAS AND _exists_:object.UMLS
- useTemplating: True
outputs:
- id: UMLS
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: CAS
semantic: SmallMolecule
parameters:
fields: >-
object.UMLS,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/UMLS'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('CAS') | wrap( '["', '","biolink:SmallMolecule"]' ) }} ],
"scopes": ["subject.CAS", "object.type"]}
CAS-HMDB:
## https://biothings.ncats.io/multiomics_wellness_kp/query?q=_exists_:subject.CAS AND _exists_:object.HMDB
- useTemplating: True
outputs:
- id: HMDB
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: CAS
semantic: SmallMolecule
parameters:
fields: >-
object.HMDB,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/HMDB'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('CAS') | wrap( '["', '","biolink:SmallMolecule"]' ) }} ],
"scopes": ["subject.CAS", "object.type"]}
HMDB-PUBCHEM_COMPOUND-Rev:
- useTemplating: True
outputs:
- id: HMDB
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: PUBCHEM.COMPOUND
semantic: SmallMolecule
parameters:
fields: >-
subject.HMDB,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/HMDB-rev'
supportBatch: True
requestBody:
body: >-
{"q": [ {{ queryInputs | replPrefix('PUBCHEM.COMPOUND') | wrap( '["', '","biolink:SmallMolecule"]' ) }} ],
"scopes": ["object.PUBCHEM_COMPOUND", "subject.type"]}
CAS-KEGG_COMPOUND-Rev:
- useTemplating: True
outputs:
- id: CAS
semantic: SmallMolecule
requestBodyType: object
inputs:
- id: KEGG.COMPOUND
semantic: SmallMolecule
parameters:
fields: >-
subject.CAS,
association.attributes,
association.sources,
subject.name,
object.name
size: 1000
predicate: correlated_with
response_mapping:
$ref: '#/components/x-bte-response-mapping/CAS-rev'
supportBatch: True