remove twitter

.gitignore

@@ -1,2 +1,4 @@
 public/
 .idea/
+resources/
+*~

.gitmodules

@@ -1,3 +0,0 @@
-[submodule "themes/academic"]
-	path = themes/academic
-	url = https://github.com/gcushen/hugo-academic.git

README.md

@@ -1,42 +1,3 @@
-# [Academic Kickstart](https://sourcethemes.com/academic/)
+# Carlos Maltzahn's UCSC homepage
 
-**Academic** makes it easy to create a beautiful website for free using Markdown, Jupyter, or RStudio. Customize anything on your site with widgets, themes, and language packs. [Check out the latest demo](https://academic-demo.netlify.com/) of what you'll get in less than 10 minutes, or [view the showcase](https://sourcethemes.com/academic/#expo).
-
-**Academic Kickstart** provides a minimal template to kickstart your new website.
-
-- [**Get Started**](#install)
-- [View the documentation](https://sourcethemes.com/academic/docs/)
-- [Ask a question](http://discuss.gohugo.io/)
-- [Request a feature or report a bug](https://github.com/gcushen/hugo-academic/issues)
-- Updating? View the [Update Guide](https://sourcethemes.com/academic/docs/update/) and [Release Notes](https://sourcethemes.com/academic/updates/)
-- Support development of Academic:
-  - [Donate a coffee](https://paypal.me/cushen)
-  - [Become a backer on Patreon](https://www.patreon.com/cushen)
-  - [Decorate your laptop or journal with an Academic sticker](https://www.redbubble.com/people/neutreno/works/34387919-academic)
-  - [Wear the T-shirt](https://academic.threadless.com/)
-
-[![Screenshot](https://raw.githubusercontent.com/gcushen/hugo-academic/master/academic.png)](https://github.com/gcushen/hugo-academic/)
-
-## Install
-
-You can choose from one of the following four methods to install:
-
-* [**one-click install using your web browser (recommended)**](https://sourcethemes.com/academic/docs/install/#install-with-web-browser)
-* [install on your computer using **Git** with the Command Prompt/Terminal app](https://sourcethemes.com/academic/docs/install/#install-with-git)
-* [install on your computer by downloading the **ZIP files**](https://sourcethemes.com/academic/docs/install/#install-with-zip)
-* [install on your computer with **RStudio**](https://sourcethemes.com/academic/docs/install/#install-with-rstudio)
-
-Then [personalize your new site](https://sourcethemes.com/academic/docs/get-started/).
-
-## Ecosystem
-
-* **[Academic Admin](https://github.com/sourcethemes/academic-admin):** An admin tool to import publications from BibTeX or import assets for an offline site
-* **[Academic Scripts](https://github.com/sourcethemes/academic-scripts):** Scripts to help migrate content to new versions of Academic
-
-## License
-
-Copyright 2017-present [George Cushen](https://georgecushen.com).
-
-Released under the [MIT](https://github.com/sourcethemes/academic-kickstart/blob/master/LICENSE.md) license.
-
-[![Analytics](https://ga-beacon.appspot.com/UA-78646709-2/academic-kickstart/readme?pixel)](https://github.com/igrigorik/ga-beacon)
+Based on [Academic Kickstart](https://sourcethemes.com/academic/).

addpdfs.py

@@ -0,0 +1,48 @@
+import os, sys
+import shutil, stat
+
+#import base64
+#from Foundation import *
+
+# Don't need this function (yet)
+#def decode_bdisk(key):
+#    """Return the relative path of file referenced by key """
+#    decodedBytes = base64.b64decode(key)
+#    nsData = NSData.dataWithBytes_length_(decodedBytes, len(decodedBytes))
+#    plist, fmt, error \
+#    = NSPropertyListSerialization\
+#      .propertyListFromData_mutabilityOption_format_errorDescription_(\
+#      nsData, 0, None, None)
+#    if plist is None:
+#        print "key: %s" % key
+#        print "failed to decode archive due to error: %s" % (error)
+#        exit(1)
+#    return plist('relativePath')
+
+homeDir = '/Users/carlosmalt'
+webSite = homeDir + '/git/carlosmalt/ucsc-homepage'
+pubDir = webSite + '/content/publication'
+paperDir = homeDir + '/gd/Papers'
+paperSubDirs = {'e': 'E-F', 'f': 'E-F', 'i': 'I-J', 'j': 'I-J', 'n': 'N-O', 
+        'o': 'N-O', 'q': 'Q-R', 'r': 'Q-R', 'u': 'U-V', 'v': 'U-V', 'x': 'X-Z', 
+        'y': 'X-Z', 'z': 'X-Z'}
+
+# copy paper pdfs from their paper directory into their pubName direcory
+pubNames = os.listdir(pubDir)
+for pubName in pubNames:
+    if pubName == '_index.md': continue
+    pubNameComps = pubName.split('-')
+    pdfName = str.join('-', pubNameComps[:2]) + \
+            str.join('', pubNameComps[2:]) + '.pdf'
+    firstAuthorLetter = pdfName[0]
+    if firstAuthorLetter in paperSubDirs:
+        paperSubDir = paperSubDirs[firstAuthorLetter]
+    else:
+        paperSubDir = firstAuthorLetter.upper()
+    src = '%s/%s/%s' % (paperDir, paperSubDir, pdfName)
+    dst = '%s/%s/%s.pdf' % (pubDir, pubName, pubName)
+    try:
+        shutil.copy2(src, dst)
+        os.chmod(dst, stat.S_IRUSR | stat.S_IRGRP | stat.S_IROTH)
+    except IOError: 
+        print('%s not found or already moved' % src)

assets/jsconfig.json

@@ -0,0 +1,10 @@
+{
+ "compilerOptions": {
+  "baseUrl": ".",
+  "paths": {
+   "*": [
+    "../../../../Library/Caches/hugo_cache/modules/filecache/modules/pkg/mod/github.com/wowchemy/wowchemy-hugo-modules/wowchemy/v5@v5.0.0-20210629192904-559885af86b7/assets/*"
+   ]
+  }
+ }
+}

config/_default/config.toml

@@ -5,25 +5,27 @@
 # Each configuration section is defined by a name in square brackets (e.g. `[outputs]`).
 
 # Title of your site
-title = "Academic"
+title = "Carlos Maltzahn"
 
 # The URL of your site.
 # End your URL with a `/` trailing slash, e.g. `https://example.com/`.
-baseurl = "/"
+baseurl = "https://users.soe.ucsc.edu/~carlosm/dev/"
+
+canonifyURLs = true
 
 # Enter a copyright notice to display in the site footer.
 # To display a copyright symbol, type `©`. For current year, type `{year}`.
 copyright = ""
 
+# To increase performance of redirects (aliases)
+disableAliases = true
+
 ############################
 ## Advanced options below ##
 ############################
 
-# Name of Academic theme folder in `themes/`.
-theme = "academic"
-
 # Get last modified date for content from Git?
-enableGitInfo = false
+enableGitInfo = true
 
 # Default language to use (if you setup multilingual support)
 defaultContentLanguage = "en"
@@ -37,7 +39,7 @@ footnotereturnlinkcontents = "<sup>^</sup>"
 ignoreFiles = ["\\.ipynb$", ".ipynb_checkpoints$", "\\.Rmd$", "\\.Rmarkdown$", "_files$", "_cache$"]
 
 [outputs]
-  home = [ "HTML", "RSS", "JSON", "WebAppManifest" ]
+  home = [ "HTML", "RSS", "JSON", "WebAppManifest", "redirects" ]
   section = [ "HTML", "RSS" ]
 
 [mediaTypes."application/manifest+json"]
@@ -47,13 +49,17 @@ ignoreFiles = ["\\.ipynb$", ".ipynb_checkpoints$", "\\.Rmd$", "\\.Rmarkdown$", "
   mediaType = "application/manifest+json"
   rel = "manifest"
 
-# Configure BlackFriday Markdown rendering.
-#   See: https://gohugo.io/getting-started/configuration/#configure-blackfriday
-[blackfriday]
-  hrefTargetBlank = true  # `true` opens external links in a new tab. See https://github.com/gohugoio/hugo/issues/2424
-	angledQuotes = false
-	latexDashes = true
-  extensions = ["backslashLineBreak"]
+[markup]
+  defaultMarkdownHandler = "goldmark"
+  [markup.goldmark]
+    [markup.goldmark.renderer]
+      unsafe = true  # Enable user to embed HTML snippets in Markdown content.
+  [markup.highlight]
+    codeFences = false  # Disable Hugo's code highlighter as it conflicts with Academic's highligher.
+  [markup.tableOfContents]
+    startLevel = 2
+    endLevel = 3
+
 
 [imaging]
   resampleFilter = "lanczos"
@@ -66,3 +72,21 @@ ignoreFiles = ["\\.ipynb$", ".ipynb_checkpoints$", "\\.Rmd$", "\\.Rmarkdown$", "
   category = "categories"
   publication_type = "publication_types"
   author = "authors"
+
+[module]
+  [[module.imports]]
+    path = "github.com/wowchemy/wowchemy-hugo-modules/wowchemy-cms/v5"
+  [[module.imports]]
+    path = "github.com/wowchemy/wowchemy-hugo-modules/wowchemy/v5"
+
+# Workaround Hugo publishing taxonomy URLs as plurals - consistently use singular across Wowchemy.
+[permalinks]
+  authors = "/author/:slug/"
+  tags = "/tag/:slug/"
+  categories = "/category/:slug/"
+  publication_types = "/publication-type/:slug/"
+
+# Hugo version >= 0.91
+[security]
+  [security.funcs]
+    getenv = ["^HUGO_", "^WC_"]

config/_default/menus.toml

@@ -5,32 +5,42 @@
 
 [[main]]
   name = "Home"
-  url = "#about"
+  url = "#aboutcm"
   weight = 10
 
 [[main]]
-  name = "Posts"
-  url = "#posts"
+  name = "News"
+  url = "#news"
   weight = 20
 
 [[main]]
-  name = "Projects"
+  name = "Research"
   url = "#projects"
   weight = 30
 
 [[main]]
   name = "Publications"
-  url = "#featured"
+  url = "#publications"
   weight = 40
 
+[[main]]
+  name = "Teaching"
+  url = "#teaching"
+  weight = 45
+
+#[[main]]
+#  name = "People"
+#  url = "#people"
+#  weight = 50
+
 [[main]]
   name = "Contact"
   url = "#contact"
   weight = 60
 
 # Link to a PDF of your resume/CV from the menu.
 # To enable, copy your resume/CV to `static/files/cv.pdf` and uncomment the lines below.
-# [[main]]
-#    name = "CV"
-#    url = "files/cv.pdf"
-#    weight = 70
+[[main]]
+  name = "CV"
+  url = "https://drive.google.com/file/d/0B5rZ7hI6vXv3R2p0SEYxZlk5Vjg/view?usp=sharing"
+  weight = 70