From cac35aa0d1731afb5db0ab6b60e10bdf03c591fd Mon Sep 17 00:00:00 2001 From: William Moore Date: Tue, 19 Sep 2023 17:20:03 +0100 Subject: [PATCH] Add idr0013.csv and tweak parse_bia_uuids.py for idr0013 --- scripts/ngff_filesets/idr0013.csv | 538 +++++++++++++++++++++++ scripts/ngff_filesets/parse_bia_uuids.py | 6 + 2 files changed, 544 insertions(+) create mode 100644 scripts/ngff_filesets/idr0013.csv diff --git a/scripts/ngff_filesets/idr0013.csv b/scripts/ngff_filesets/idr0013.csv new file mode 100644 index 00000000..236302ca --- /dev/null +++ b/scripts/ngff_filesets/idr0013.csv @@ -0,0 +1,538 @@ +idr0013/LT0113_01.ome.zarr,S-BIAD865/011c38fb-c3d0-4d1d-82d8-9147a5060d88,18761 +idr0013/LT0103_12.ome.zarr,S-BIAD865/02917ea2-73d1-48dd-b16e-ee6b99f6d07f,18727 +idr0013/LT0156_09.ome.zarr,S-BIAD865/02cf48a2-62d5-4b22-840e-38dc5f4f0e0a,18933 +idr0013/LT0150_02.ome.zarr,S-BIAD865/035f536c-be43-40bb-b6a4-43d3f7742105,18914 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b/scripts/ngff_filesets/parse_bia_uuids.py index de237f28..1440dd2e 100644 --- a/scripts/ngff_filesets/parse_bia_uuids.py +++ b/scripts/ngff_filesets/parse_bia_uuids.py @@ -34,6 +34,12 @@ def main(argv): # idr0051/180712_H2B_22ss_Courtney_p00_c00_reg_preview.klb.ome.zarr.zip fileset_name = row[0] bia_id = row[1] + + # special handling for idr0013. e.g. idr0013/LT0021_51--ex2006_08_30--sp2006_08_21--tt20--c5.ome.zarr + # needs to be shortened to idr0013/LT0021_51--ex2006_08_30 (name in IDR) + if fileset_name.startswith("idr0013"): + fileset_name = fileset_name.split("--")[0] + ".ome.zarr" + if fileset_name in fsids_by_fsname: fsid = fsids_by_fsname[fileset_name] bia_by_fsid.append([fileset_name, bia_id, fsid])