From ddadff64ad2b7d40e233a3b724f349ff2445a0cd Mon Sep 17 00:00:00 2001 From: Jennifer Jou Date: Mon, 29 Apr 2024 09:52:37 -0700 Subject: [PATCH 1/2] Add new sequencing kit enum --- src/igvfd/schemas/changelogs/sequence_file.md | 1 + src/igvfd/schemas/sequence_file.json | 3 ++- 2 files changed, 3 insertions(+), 1 deletion(-) diff --git a/src/igvfd/schemas/changelogs/sequence_file.md b/src/igvfd/schemas/changelogs/sequence_file.md index 5affc141c..a9b81160f 100644 --- a/src/igvfd/schemas/changelogs/sequence_file.md +++ b/src/igvfd/schemas/changelogs/sequence_file.md @@ -2,6 +2,7 @@ ### Minor changes since schema version 12 +* Extend `sequencing_kit` enum list to include `ONT Ligation Sequencing Kit V14`. * Extend `sequencing_kit` enum list to include `MiSeq Reagent Kit v2`. * Extend `collections` enum list to include `Vista`. * Extend `collections` enum list to include `IGVF_catalog_beta_v0.2`. diff --git a/src/igvfd/schemas/sequence_file.json b/src/igvfd/schemas/sequence_file.json index b7093a591..d8279c197 100644 --- a/src/igvfd/schemas/sequence_file.json +++ b/src/igvfd/schemas/sequence_file.json @@ -247,7 +247,8 @@ "NovaSeq 6000 S2 Reagent Kit v1.5", "NovaSeq 6000 S4 Reagent Kit V1.5", "Sequel sequencing kit 3.0", - "Sequel II sequencing kit 2.0" + "Sequel II sequencing kit 2.0", + "ONT Ligation Sequencing Kit V14" ], "submissionExample": { "appscript": "HiSeq SBS Kit v4", From 2227042001fc361822e34f63c41888a61c795cb3 Mon Sep 17 00:00:00 2001 From: Jennifer Jou Date: Mon, 29 Apr 2024 10:28:39 -0700 Subject: [PATCH 2/2] Update insert --- src/igvfd/tests/data/inserts/sequence_file.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/igvfd/tests/data/inserts/sequence_file.json b/src/igvfd/tests/data/inserts/sequence_file.json index 9fd1c153f..9454f7076 100644 --- a/src/igvfd/tests/data/inserts/sequence_file.json +++ b/src/igvfd/tests/data/inserts/sequence_file.json @@ -106,7 +106,7 @@ "upload_status": "validated", "file_set": "igvf:basic_measurement_set", "sequencing_run": 3, - "sequencing_kit": "MiSeq Reagent Kit v2", + "sequencing_kit": "ONT Ligation Sequencing Kit V14", "sequencing_platform": "556bf993-70dc-7f34-497c-e6c0fa6a4af0" } ]